Wall clock time and date at job start Mon Mar 30 2020 01:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47322 * 2 1 4 4 C 1.50702 * 109.47175 * 180.02562 * 3 2 1 5 5 C 1.32996 * 119.99879 * 124.72294 * 4 3 2 6 6 C 1.47108 * 120.00028 * 180.27629 * 5 4 3 7 7 O 1.21613 * 119.99489 * 0.02562 * 6 5 4 8 8 N 1.34768 * 119.99860 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99981 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.46949 * 90.00207 * 9 8 6 11 11 H 1.08004 * 120.00186 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00081 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00096 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00103 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47126 * 89.99954 * 14 12 10 16 16 H 1.48502 * 109.47268 * 209.99847 * 14 12 10 17 17 H 1.48501 * 109.47027 * 329.99834 * 14 12 10 18 18 C 1.46496 * 120.00476 * 0.02562 * 8 6 5 19 19 C 1.50703 * 109.47468 * 89.99355 * 18 8 6 20 20 C 1.34514 * 125.78673 * 89.71561 * 19 18 8 21 21 C 1.41378 * 106.83954 * 179.89106 * 20 19 18 22 22 C 1.34508 * 106.84066 * 0.37607 * 21 20 19 23 23 O 1.34298 * 108.42285 * 359.77003 * 22 21 20 24 24 H 1.09002 * 109.46801 * 300.00030 * 1 2 3 25 25 H 1.08997 * 109.47649 * 59.99665 * 1 2 3 26 26 H 1.09000 * 109.47568 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46801 * 239.99970 * 2 1 3 28 28 H 1.08999 * 109.47131 * 120.00362 * 2 1 3 29 29 H 1.09002 * 109.47207 * 60.00218 * 3 2 1 30 30 H 1.08999 * 109.47313 * 300.00250 * 3 2 1 31 31 H 1.08002 * 120.00299 * 305.00583 * 4 3 2 32 32 H 1.08001 * 120.00297 * 0.27681 * 5 4 3 33 33 H 1.08995 * 109.47940 * 210.00308 * 9 8 6 34 34 H 1.09005 * 109.47076 * 330.00568 * 9 8 6 35 35 H 0.96996 * 120.00013 * 179.97438 * 13 12 10 36 36 H 1.08997 * 109.47484 * 209.99670 * 18 8 6 37 37 H 1.09004 * 109.47079 * 329.99527 * 18 8 6 38 38 H 1.07998 * 126.57973 * 0.03173 * 20 19 18 39 39 H 1.08002 * 126.57937 * 180.16415 * 21 20 19 40 40 H 1.08009 * 125.78832 * 179.75295 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2116 2.0986 -0.9475 6 6 5.6826 2.0935 -0.9517 7 8 6.2910 1.4889 -0.0895 8 7 6.3560 2.7581 -1.9114 9 6 7.8210 2.7535 -1.9153 10 6 8.3175 1.5857 -2.7281 11 1 7.6124 0.9143 -3.1955 12 6 9.6721 1.3744 -2.8752 13 7 10.5308 2.1916 -2.3057 14 14 10.2876 -0.0728 -3.8834 15 1 10.4508 0.3441 -5.2992 16 1 11.5954 -0.5287 -3.3477 17 1 9.3058 -1.1841 -3.8047 18 6 5.6232 3.4859 -2.9503 19 6 5.3786 4.9014 -2.4945 20 6 6.1983 5.9475 -2.7024 21 6 5.5814 7.0747 -2.1127 22 6 4.4258 6.6483 -1.5724 23 8 4.3081 5.3312 -1.8067 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 4.0874 0.9057 0.7652 32 1 3.6713 2.6352 -1.7134 33 1 8.1862 3.6824 -2.3532 34 1 8.1868 2.6657 -0.8922 35 1 11.4837 2.0427 -2.4088 36 1 6.2095 3.4963 -3.8691 37 1 4.6683 2.9933 -3.1342 38 1 7.1447 5.9301 -3.2223 39 1 5.9662 8.0837 -2.0959 40 1 3.7133 7.2613 -1.0401 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729352337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:49 Heat of formation + Delta-G solvation = -15.290205 kcal Electronic energy + Delta-G solvation = -21236.473920 eV Core-core repulsion = 18018.192545 eV Total energy + Delta-G solvation = -3218.281375 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.28678 -39.00708 -36.01852 -35.12500 -32.85306 -32.67212 -32.03473 -30.10697 -28.00417 -26.57976 -25.35395 -23.33323 -21.68633 -21.44949 -20.52367 -20.06358 -18.29627 -17.25717 -16.77210 -16.27666 -15.73206 -15.48542 -14.95985 -14.60477 -14.30257 -14.00863 -13.66908 -13.25647 -13.04653 -12.62570 -12.58215 -12.47400 -12.39827 -12.13169 -11.79835 -11.48224 -11.36714 -11.18999 -11.10990 -10.88555 -10.78435 -10.57626 -10.18050 -9.71392 -9.63742 -9.04882 -8.97535 -8.43665 -8.27958 -7.75805 -6.04067 -4.09067 1.80121 1.94834 2.85598 3.22673 3.30602 3.37513 3.42015 3.96853 4.09321 4.45327 4.78702 4.88818 4.95448 4.99275 5.15019 5.27932 5.29016 5.30187 5.35006 5.46420 5.57330 5.65612 5.69862 5.77772 5.89800 5.93608 6.03816 6.04840 6.18947 6.21127 6.32354 6.61649 6.71427 6.74998 7.10544 7.35552 7.46164 7.53170 7.92305 8.22559 8.36152 8.90041 9.08175 9.56067 11.04075 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011156 B = 0.005814 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.369807 B = 4814.548434 C = 6857.605571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.094 4.094 4 C -0.085 4.085 5 C -0.204 4.204 6 C 0.538 3.462 7 O -0.539 6.539 8 N -0.590 5.590 9 C 0.246 3.754 10 C -0.527 4.527 11 H 0.059 0.941 12 C 0.062 3.938 13 N -0.894 5.894 14 Si 0.898 3.102 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.191 3.809 19 C -0.025 4.025 20 C -0.195 4.195 21 C -0.214 4.214 22 C -0.051 4.051 23 O -0.175 6.175 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.034 0.966 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.150 0.850 39 H 0.144 0.856 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.725 5.151 0.282 18.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.131 4.131 4 C -0.105 4.105 5 C -0.224 4.224 6 C 0.327 3.673 7 O -0.418 6.418 8 N -0.320 5.320 9 C 0.127 3.873 10 C -0.566 4.566 11 H 0.077 0.923 12 C -0.140 4.140 13 N -0.533 5.533 14 Si 0.726 3.274 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.199 1.199 18 C 0.066 3.934 19 C -0.076 4.076 20 C -0.215 4.215 21 C -0.233 4.233 22 C -0.119 4.119 23 O -0.071 6.071 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.133 0.867 37 H 0.104 0.896 38 H 0.167 0.833 39 H 0.162 0.838 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -17.394 4.662 0.840 18.027 hybrid contribution 0.687 -0.284 -0.618 0.967 sum -16.706 4.378 0.222 17.272 Atomic orbital electron populations 1.21780 0.95806 1.01583 1.01740 1.21485 0.95567 0.96253 1.02686 1.20817 0.92143 0.97442 1.02734 1.23610 0.95360 0.94686 0.96855 1.22921 0.94355 1.03696 1.01470 1.18487 0.87561 0.79458 0.81745 1.90747 1.70228 1.43382 1.37457 1.48198 1.09455 1.48224 1.26145 1.19320 0.71774 0.97198 0.98976 1.21436 0.91780 1.11682 1.31715 0.92309 1.24933 0.96622 0.96581 0.95887 1.69939 1.02187 1.37345 1.43803 0.86495 0.78272 0.82696 0.79961 1.20613 1.21108 1.19867 1.19912 0.98231 0.83107 0.92111 1.23321 0.87330 0.97830 0.99147 1.21701 1.01735 0.92033 1.06075 1.21816 0.96775 1.00299 1.04411 1.23921 1.00739 0.82081 1.05182 1.84005 1.40911 1.23956 1.58185 0.92789 0.92733 0.92758 0.91633 0.91652 0.90542 0.91231 0.85846 0.86082 0.94844 0.93783 0.92710 0.86690 0.89622 0.83261 0.83817 0.78616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.15 0.37 -0.84 16 2 C -0.12 -1.19 5.92 -26.74 -0.16 -1.35 16 3 C -0.09 -1.00 5.67 -27.88 -0.16 -1.16 16 4 C -0.09 -1.25 9.09 -36.12 -0.33 -1.58 16 5 C -0.20 -3.40 8.82 -37.80 -0.33 -3.73 16 6 C 0.54 11.88 7.62 -12.67 -0.10 11.79 16 7 O -0.54 -14.20 15.80 5.27 0.08 -14.12 16 8 N -0.59 -12.86 2.44 -177.84 -0.43 -13.29 16 9 C 0.25 6.50 5.16 -5.20 -0.03 6.47 16 10 C -0.53 -14.90 9.39 -34.44 -0.32 -15.23 16 11 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 14 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 C 0.19 3.23 5.65 -5.19 -0.03 3.20 16 19 C -0.02 -0.40 6.90 -35.62 -0.25 -0.65 16 20 C -0.20 -3.13 10.81 -39.70 -0.43 -3.56 16 21 C -0.21 -2.92 10.91 -39.71 -0.43 -3.36 16 22 C -0.05 -0.65 12.09 29.41 0.36 -0.30 16 23 O -0.17 -2.66 10.65 5.73 0.06 -2.60 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.69 7.82 -51.93 -0.41 0.29 16 31 H 0.12 1.98 7.49 -52.49 -0.39 1.59 16 32 H 0.12 1.73 6.04 -52.49 -0.32 1.41 16 33 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.12 1.87 8.07 -51.93 -0.42 1.45 16 37 H 0.09 1.21 6.09 -51.93 -0.32 0.90 16 38 H 0.15 2.37 8.06 -52.49 -0.42 1.94 16 39 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 40 H 0.20 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 346.58 15.07 5.22 5.22 Total: -1.00 -33.66 346.58 -7.29 -40.95 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.01 Total: 1.50 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -1.94 Total: -8.62 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.30 Total: -39.13 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: 0.14 Total: -16.72 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.66 -7.29 -40.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729352337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.661 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds