Wall clock time and date at job start Mon Mar 30 2020 01:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47322 * 2 1 4 4 C 1.50702 * 109.47175 * 180.02562 * 3 2 1 5 5 C 1.32996 * 119.99879 * 124.72294 * 4 3 2 6 6 C 1.47108 * 120.00028 * 180.27629 * 5 4 3 7 7 O 1.21613 * 119.99489 * 0.02562 * 6 5 4 8 8 N 1.34768 * 119.99860 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99981 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.46949 * 90.00207 * 9 8 6 11 11 H 1.08004 * 120.00186 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00081 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00096 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00103 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47126 * 89.99954 * 14 12 10 16 16 H 1.48502 * 109.47268 * 209.99847 * 14 12 10 17 17 H 1.48501 * 109.47027 * 329.99834 * 14 12 10 18 18 C 1.46496 * 120.00476 * 0.02562 * 8 6 5 19 19 C 1.50703 * 109.47468 * 89.99355 * 18 8 6 20 20 C 1.34514 * 125.78673 * 89.71561 * 19 18 8 21 21 C 1.41378 * 106.83954 * 179.89106 * 20 19 18 22 22 C 1.34508 * 106.84066 * 0.37607 * 21 20 19 23 23 O 1.34298 * 108.42285 * 359.77003 * 22 21 20 24 24 H 1.09002 * 109.46801 * 300.00030 * 1 2 3 25 25 H 1.08997 * 109.47649 * 59.99665 * 1 2 3 26 26 H 1.09000 * 109.47568 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46801 * 239.99970 * 2 1 3 28 28 H 1.08999 * 109.47131 * 120.00362 * 2 1 3 29 29 H 1.09002 * 109.47207 * 60.00218 * 3 2 1 30 30 H 1.08999 * 109.47313 * 300.00250 * 3 2 1 31 31 H 1.08002 * 120.00299 * 305.00583 * 4 3 2 32 32 H 1.08001 * 120.00297 * 0.27681 * 5 4 3 33 33 H 1.08995 * 109.47940 * 210.00308 * 9 8 6 34 34 H 1.09005 * 109.47076 * 330.00568 * 9 8 6 35 35 H 0.96996 * 120.00013 * 179.97438 * 13 12 10 36 36 H 1.08997 * 109.47484 * 209.99670 * 18 8 6 37 37 H 1.09004 * 109.47079 * 329.99527 * 18 8 6 38 38 H 1.07998 * 126.57973 * 0.03173 * 20 19 18 39 39 H 1.08002 * 126.57937 * 180.16415 * 21 20 19 40 40 H 1.08009 * 125.78832 * 179.75295 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2116 2.0986 -0.9475 6 6 5.6826 2.0935 -0.9517 7 8 6.2910 1.4889 -0.0895 8 7 6.3560 2.7581 -1.9114 9 6 7.8210 2.7535 -1.9153 10 6 8.3175 1.5857 -2.7281 11 1 7.6124 0.9143 -3.1955 12 6 9.6721 1.3744 -2.8752 13 7 10.5308 2.1916 -2.3057 14 14 10.2876 -0.0728 -3.8834 15 1 10.4508 0.3441 -5.2992 16 1 11.5954 -0.5287 -3.3477 17 1 9.3058 -1.1841 -3.8047 18 6 5.6232 3.4859 -2.9503 19 6 5.3786 4.9014 -2.4945 20 6 6.1983 5.9475 -2.7024 21 6 5.5814 7.0747 -2.1127 22 6 4.4258 6.6483 -1.5724 23 8 4.3081 5.3312 -1.8067 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 4.0874 0.9057 0.7652 32 1 3.6713 2.6352 -1.7134 33 1 8.1862 3.6824 -2.3532 34 1 8.1868 2.6657 -0.8922 35 1 11.4837 2.0427 -2.4088 36 1 6.2095 3.4963 -3.8691 37 1 4.6683 2.9933 -3.1342 38 1 7.1447 5.9301 -3.2223 39 1 5.9662 8.0837 -2.0959 40 1 3.7133 7.2613 -1.0401 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729352337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:48 Heat of formation + Delta-G solvation = -35.175722 kcal Electronic energy + Delta-G solvation = -21237.336221 eV Core-core repulsion = 18018.192545 eV Total energy + Delta-G solvation = -3219.143675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.43014 -40.70843 -37.18351 -36.69668 -34.89184 -33.84800 -33.19908 -31.53668 -29.69414 -27.82170 -26.78048 -25.14674 -22.74345 -22.60694 -21.73720 -21.30299 -19.74571 -18.81500 -18.44779 -17.88951 -17.33893 -16.72384 -16.39208 -16.05325 -15.75569 -15.23462 -14.92677 -14.56635 -14.34567 -14.12167 -13.97212 -13.72886 -13.55795 -13.43623 -13.26891 -13.02153 -12.78045 -12.62257 -12.40958 -12.24382 -12.21973 -12.04184 -11.77105 -11.53866 -10.82006 -10.72014 -10.64770 -10.32663 -9.66724 -9.37355 -8.23283 -6.38321 0.45173 0.77370 1.37069 1.40182 1.50696 1.70270 2.08583 2.29622 2.47620 2.51984 3.06728 3.63147 3.80970 3.97210 4.07234 4.17387 4.22037 4.24848 4.27883 4.38441 4.57389 4.69466 4.76104 4.87953 4.92168 4.96101 5.02218 5.05412 5.17676 5.22038 5.24088 5.27355 5.46570 5.49151 5.54021 5.58008 5.63230 5.80115 6.03544 6.24163 6.63836 6.71668 7.25091 7.40406 8.84493 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011156 B = 0.005814 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.369807 B = 4814.548434 C = 6857.605571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.088 4.088 4 C -0.057 4.057 5 C -0.220 4.220 6 C 0.527 3.473 7 O -0.600 6.600 8 N -0.594 5.594 9 C 0.265 3.735 10 C -0.544 4.544 11 H 0.057 0.943 12 C 0.009 3.991 13 N -0.929 5.929 14 Si 0.970 3.030 15 H -0.261 1.261 16 H -0.282 1.282 17 H -0.273 1.273 18 C 0.190 3.810 19 C -0.045 4.045 20 C -0.212 4.212 21 C -0.230 4.230 22 C -0.034 4.034 23 O -0.180 6.180 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.152 0.848 33 H 0.024 0.976 34 H -0.007 1.007 35 H 0.267 0.733 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.139 0.861 39 H 0.167 0.833 40 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.553 5.500 -0.485 21.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.125 4.125 4 C -0.077 4.077 5 C -0.241 4.241 6 C 0.319 3.681 7 O -0.484 6.484 8 N -0.323 5.323 9 C 0.144 3.856 10 C -0.582 4.582 11 H 0.075 0.925 12 C -0.190 4.190 13 N -0.568 5.568 14 Si 0.794 3.206 15 H -0.186 1.186 16 H -0.207 1.207 17 H -0.197 1.197 18 C 0.067 3.933 19 C -0.096 4.096 20 C -0.232 4.232 21 C -0.249 4.249 22 C -0.101 4.101 23 O -0.076 6.076 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.169 0.831 33 H 0.042 0.958 34 H 0.011 0.989 35 H 0.076 0.924 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.157 0.843 39 H 0.185 0.815 40 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -20.261 5.042 0.034 20.879 hybrid contribution 1.518 -0.317 -0.281 1.576 sum -18.743 4.725 -0.247 19.331 Atomic orbital electron populations 1.21748 0.94021 1.02236 1.02521 1.21490 0.97072 0.95343 1.02190 1.20894 0.88542 0.98536 1.04502 1.23921 0.97812 0.91494 0.94512 1.22727 0.90664 1.06706 1.03991 1.19442 0.89898 0.78152 0.80610 1.90701 1.71886 1.46059 1.39741 1.48156 1.07862 1.48840 1.27465 1.18737 0.75051 0.96362 0.95474 1.21693 0.92297 1.12208 1.32007 0.92501 1.25875 0.96750 0.99457 0.96938 1.70065 1.02615 1.39155 1.44974 0.85381 0.77435 0.78777 0.79010 1.18579 1.20719 1.19730 1.20075 0.98998 0.83643 0.90535 1.23001 0.88392 0.97370 1.00832 1.21905 1.01530 0.93495 1.06306 1.22131 0.97278 1.00773 1.04741 1.24851 1.00857 0.81148 1.03252 1.83991 1.40321 1.25277 1.57975 0.91923 0.92027 0.92267 0.92456 0.92032 0.88558 0.89483 0.87951 0.83101 0.95752 0.98889 0.92380 0.86733 0.86412 0.84318 0.81526 0.73991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 71.98 0.71 -1.17 16 2 C -0.12 -2.10 5.92 30.59 0.18 -1.92 16 3 C -0.09 -1.60 5.67 29.85 0.17 -1.43 16 4 C -0.06 -1.61 9.09 24.52 0.22 -1.39 16 5 C -0.22 -7.18 8.82 23.43 0.21 -6.97 16 6 C 0.53 24.10 7.62 86.57 0.66 24.76 16 7 O -0.60 -33.57 15.80 -4.07 -0.06 -33.63 16 8 N -0.59 -26.93 2.44 -834.81 -2.04 -28.97 16 9 C 0.26 14.84 5.16 85.63 0.44 15.28 16 10 C -0.54 -31.88 9.39 25.60 0.24 -31.64 16 11 H 0.06 3.28 7.81 -2.91 -0.02 3.25 16 12 C 0.01 0.52 5.46 84.66 0.46 0.98 16 13 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 14 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 15 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 17 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 18 C 0.19 6.44 5.65 85.63 0.48 6.92 16 19 C -0.04 -1.45 6.90 24.83 0.17 -1.27 16 20 C -0.21 -6.82 10.81 22.19 0.24 -6.58 16 21 C -0.23 -5.90 10.91 22.19 0.24 -5.65 16 22 C -0.03 -0.76 12.09 66.97 0.81 0.05 16 23 O -0.18 -5.08 10.65 -2.41 -0.03 -5.11 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.09 1.36 7.82 -2.39 -0.02 1.34 16 31 H 0.10 3.34 7.49 -2.91 -0.02 3.32 16 32 H 0.15 3.93 6.04 -2.91 -0.02 3.91 16 33 H 0.02 1.38 8.07 -2.39 -0.02 1.36 16 34 H -0.01 -0.46 7.42 -2.38 -0.02 -0.48 16 35 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.11 3.81 8.07 -2.39 -0.02 3.79 16 37 H 0.12 3.16 6.09 -2.38 -0.01 3.15 16 38 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 39 H 0.17 3.36 8.06 -2.91 -0.02 3.33 16 40 H 0.24 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -77.62 346.58 6.44 -71.18 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 1.01 Total: 15.92 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 5.24 Total: -10.03 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -1.75 Total: -85.68 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -0.09 Total: -38.74 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -77.62 6.44 -71.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729352337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.001 kcal (2) G-P(sol) polarization free energy of solvation -77.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds