Wall clock time and date at job start Mon Mar 30 2020 01:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47102 * 2 1 4 4 C 1.50693 * 109.46985 * 180.02562 * 3 2 1 5 5 C 1.33001 * 120.00314 * 135.85223 * 4 3 2 6 6 C 1.47103 * 119.99380 * 15.12187 * 5 4 3 7 7 O 1.21609 * 120.00299 * 6.77222 * 6 5 4 8 8 N 1.34776 * 119.99797 * 186.77395 * 6 5 4 9 9 C 1.46500 * 120.00008 * 179.72694 * 8 6 5 10 10 C 1.50697 * 109.47206 * 89.99653 * 9 8 6 11 11 H 1.08006 * 120.00282 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99898 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00045 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99869 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46771 * 60.00210 * 14 12 10 16 16 H 1.48499 * 109.46847 * 179.97438 * 14 12 10 17 17 H 1.48491 * 109.47194 * 300.00233 * 14 12 10 18 18 C 1.46507 * 119.99811 * 359.97438 * 8 6 5 19 19 C 1.50693 * 109.46938 * 90.00679 * 18 8 6 20 20 C 1.34509 * 125.79567 * 89.99789 * 19 18 8 21 21 C 1.41383 * 106.84636 * 179.97438 * 20 19 18 22 22 C 1.34519 * 106.83675 * 359.97438 * 21 20 19 23 23 O 1.34302 * 108.41944 * 359.73508 * 22 21 20 24 24 H 1.08997 * 109.47009 * 60.00039 * 1 2 3 25 25 H 1.09007 * 109.47148 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47059 * 299.99642 * 1 2 3 27 27 H 1.09002 * 109.46677 * 239.99748 * 2 1 3 28 28 H 1.08997 * 109.47009 * 119.99961 * 2 1 3 29 29 H 1.08998 * 109.46871 * 59.99692 * 3 2 1 30 30 H 1.09000 * 109.46739 * 299.99559 * 3 2 1 31 31 H 1.08003 * 120.00368 * 315.85737 * 4 3 2 32 32 H 1.07999 * 120.00358 * 195.12339 * 5 4 3 33 33 H 1.09002 * 109.46791 * 209.99713 * 9 8 6 34 34 H 1.08996 * 109.46745 * 329.99419 * 9 8 6 35 35 H 0.97000 * 120.00340 * 180.02562 * 13 12 10 36 36 H 1.09002 * 109.46636 * 210.00452 * 18 8 6 37 37 H 1.08995 * 109.47185 * 330.00135 * 18 8 6 38 38 H 1.08000 * 126.57655 * 359.96585 * 20 19 18 39 39 H 1.08002 * 126.58192 * 179.97438 * 21 20 19 40 40 H 1.07998 * 125.78389 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 6 4.2117 2.2690 -0.8030 6 6 3.5141 3.3989 -1.4360 7 8 2.3640 3.6510 -1.1316 8 7 4.1495 4.1546 -2.3533 9 6 3.4528 5.2762 -2.9881 10 6 3.6701 6.5269 -2.1761 11 1 4.2678 6.4902 -1.2773 12 6 3.1068 7.7184 -2.5812 13 7 2.3803 7.7635 -3.6765 14 14 3.3756 9.2687 -1.5743 15 1 4.8288 9.5655 -1.5009 16 1 2.6705 10.4058 -2.2185 17 1 2.8417 9.0672 -0.2034 18 6 5.5352 3.8512 -2.7196 19 6 5.5490 2.8845 -3.8756 20 6 5.5544 3.2168 -5.1790 21 6 5.5680 2.0069 -5.9102 22 6 5.5706 1.0074 -5.0099 23 8 5.5653 1.5450 -3.7791 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9562 -0.8900 31 1 4.0873 0.7712 0.6504 32 1 5.2636 2.1107 -0.9899 33 1 3.8440 5.4239 -3.9948 34 1 2.3862 5.0581 -3.0412 35 1 1.9843 8.6017 -3.9618 36 1 6.0442 4.7707 -3.0088 37 1 6.0471 3.4052 -1.8669 38 1 5.5493 4.2162 -5.5884 39 1 5.5749 1.9046 -6.9854 40 1 5.5805 -0.0481 -5.2381 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729352338.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:51 Heat of formation + Delta-G solvation = -4.527356 kcal Electronic energy + Delta-G solvation = -21587.538213 eV Core-core repulsion = 18369.723551 eV Total energy + Delta-G solvation = -3217.814663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.27973 -39.18855 -35.91095 -34.79332 -32.84760 -32.66657 -31.94923 -30.10293 -27.86922 -26.40121 -25.33772 -23.37745 -21.45125 -21.36785 -20.69337 -20.27422 -18.07847 -17.11820 -16.66934 -16.25871 -15.75868 -15.14547 -15.09410 -14.54551 -14.28386 -13.78938 -13.66705 -13.11397 -12.86114 -12.59861 -12.57673 -12.48217 -12.37118 -12.11590 -11.79024 -11.47909 -11.22151 -11.16647 -10.94001 -10.76607 -10.58109 -10.40234 -10.15065 -9.70365 -9.62817 -8.98074 -8.63721 -8.43383 -8.26869 -7.71710 -6.04018 -4.09066 1.80084 1.95037 2.85930 3.23133 3.32421 3.36974 3.40120 3.97099 4.09570 4.45736 4.95537 5.00691 5.10605 5.19205 5.24866 5.28540 5.28691 5.32551 5.48206 5.63375 5.73787 5.88954 5.92887 5.95262 6.00637 6.04157 6.21185 6.24094 6.32716 6.36674 6.47305 6.71035 6.75054 6.91213 7.12526 7.36566 7.46509 7.53790 7.92178 8.22676 8.37510 8.90047 9.09065 9.56074 11.03987 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.010929 B = 0.006544 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.374033 B = 4277.837544 C = 6160.013909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.115 4.115 4 C -0.074 4.074 5 C -0.216 4.216 6 C 0.538 3.462 7 O -0.529 6.529 8 N -0.590 5.590 9 C 0.247 3.753 10 C -0.528 4.528 11 H 0.058 0.942 12 C 0.062 3.938 13 N -0.894 5.894 14 Si 0.898 3.102 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.191 3.809 19 C -0.024 4.024 20 C -0.196 4.196 21 C -0.214 4.214 22 C -0.051 4.051 23 O -0.174 6.174 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.033 0.967 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.208 -15.040 1.179 16.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.151 4.151 4 C -0.094 4.094 5 C -0.237 4.237 6 C 0.328 3.672 7 O -0.409 6.409 8 N -0.321 5.321 9 C 0.128 3.872 10 C -0.566 4.566 11 H 0.076 0.924 12 C -0.140 4.140 13 N -0.533 5.533 14 Si 0.725 3.275 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C 0.066 3.934 19 C -0.075 4.075 20 C -0.216 4.216 21 C -0.233 4.233 22 C -0.119 4.119 23 O -0.070 6.070 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.141 0.859 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.132 0.868 37 H 0.104 0.896 38 H 0.167 0.833 39 H 0.162 0.838 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 5.477 -14.882 1.483 15.927 hybrid contribution 0.312 0.892 0.069 0.948 sum 5.789 -13.990 1.552 15.220 Atomic orbital electron populations 1.21749 0.95871 1.00965 1.02228 1.21520 0.95892 0.97042 1.01257 1.21246 0.91950 0.96140 1.05768 1.23578 0.96753 0.95446 0.93602 1.22876 1.00846 0.97975 1.02015 1.18490 0.86229 0.82881 0.79620 1.90677 1.17302 1.70549 1.62367 1.48239 1.12173 1.31661 1.40023 1.19304 0.93577 0.81759 0.92562 1.21397 1.32364 0.92951 1.09923 0.92389 1.24925 0.94894 0.99004 0.95157 1.69924 1.33440 1.26983 1.22947 0.86564 0.78231 0.82229 0.80431 1.20224 1.21210 1.20188 1.19908 0.85849 0.95198 0.92443 1.23313 1.05415 0.81033 0.97762 1.21697 1.07543 0.99885 0.92503 1.21817 1.08526 0.92504 1.00457 1.23919 1.07409 0.99145 0.81473 1.84012 1.71180 1.20435 1.31391 0.92469 0.93204 0.92760 0.92390 0.92659 0.90691 0.87415 0.86641 0.85947 0.94907 0.93795 0.92661 0.86767 0.89615 0.83286 0.83832 0.78639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 37.16 0.37 -1.39 16 2 C -0.12 -1.46 5.92 -26.73 -0.16 -1.62 16 3 C -0.11 -1.77 4.54 -27.89 -0.13 -1.89 16 4 C -0.07 -1.07 9.56 -36.13 -0.35 -1.42 16 5 C -0.22 -3.56 9.23 -37.80 -0.35 -3.91 16 6 C 0.54 11.50 7.39 -12.66 -0.09 11.41 16 7 O -0.53 -13.17 12.96 5.27 0.07 -13.10 16 8 N -0.59 -12.65 2.44 -177.84 -0.43 -13.09 16 9 C 0.25 6.43 5.16 -5.20 -0.03 6.40 16 10 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 11 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 14 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 C 0.19 3.20 5.69 -5.19 -0.03 3.17 16 19 C -0.02 -0.39 6.90 -35.63 -0.25 -0.63 16 20 C -0.20 -3.13 10.81 -39.70 -0.43 -3.56 16 21 C -0.21 -2.92 10.91 -39.70 -0.43 -3.35 16 22 C -0.05 -0.66 12.09 29.42 0.36 -0.30 16 23 O -0.17 -2.66 10.65 5.71 0.06 -2.60 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.11 2.06 5.34 -51.93 -0.28 1.78 16 31 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 32 H 0.12 1.72 6.17 -52.49 -0.32 1.39 16 33 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 34 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.11 1.85 8.07 -51.93 -0.42 1.43 16 37 H 0.09 1.20 6.02 -51.93 -0.31 0.89 16 38 H 0.15 2.36 8.06 -52.49 -0.42 1.93 16 39 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 40 H 0.20 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 341.45 15.07 5.15 5.15 Total: -1.00 -32.62 341.45 -7.29 -39.91 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.91 Total: 3.24 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -1.93 Total: -10.53 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.30 Total: -38.78 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.13 Total: -15.70 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.62 -7.29 -39.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729352338.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.379 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds