Wall clock time and date at job start Mon Mar 30 2020 01:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47102 * 2 1 4 4 C 1.50693 * 109.46985 * 180.02562 * 3 2 1 5 5 C 1.33001 * 120.00314 * 135.85223 * 4 3 2 6 6 C 1.47103 * 119.99380 * 15.12187 * 5 4 3 7 7 O 1.21609 * 120.00299 * 6.77222 * 6 5 4 8 8 N 1.34776 * 119.99797 * 186.77395 * 6 5 4 9 9 C 1.46500 * 120.00008 * 179.72694 * 8 6 5 10 10 C 1.50697 * 109.47206 * 89.99653 * 9 8 6 11 11 H 1.08006 * 120.00282 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99898 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00045 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99869 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46771 * 60.00210 * 14 12 10 16 16 H 1.48499 * 109.46847 * 179.97438 * 14 12 10 17 17 H 1.48491 * 109.47194 * 300.00233 * 14 12 10 18 18 C 1.46507 * 119.99811 * 359.97438 * 8 6 5 19 19 C 1.50693 * 109.46938 * 90.00679 * 18 8 6 20 20 C 1.34509 * 125.79567 * 89.99789 * 19 18 8 21 21 C 1.41383 * 106.84636 * 179.97438 * 20 19 18 22 22 C 1.34519 * 106.83675 * 359.97438 * 21 20 19 23 23 O 1.34302 * 108.41944 * 359.73508 * 22 21 20 24 24 H 1.08997 * 109.47009 * 60.00039 * 1 2 3 25 25 H 1.09007 * 109.47148 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47059 * 299.99642 * 1 2 3 27 27 H 1.09002 * 109.46677 * 239.99748 * 2 1 3 28 28 H 1.08997 * 109.47009 * 119.99961 * 2 1 3 29 29 H 1.08998 * 109.46871 * 59.99692 * 3 2 1 30 30 H 1.09000 * 109.46739 * 299.99559 * 3 2 1 31 31 H 1.08003 * 120.00368 * 315.85737 * 4 3 2 32 32 H 1.07999 * 120.00358 * 195.12339 * 5 4 3 33 33 H 1.09002 * 109.46791 * 209.99713 * 9 8 6 34 34 H 1.08996 * 109.46745 * 329.99419 * 9 8 6 35 35 H 0.97000 * 120.00340 * 180.02562 * 13 12 10 36 36 H 1.09002 * 109.46636 * 210.00452 * 18 8 6 37 37 H 1.08995 * 109.47185 * 330.00135 * 18 8 6 38 38 H 1.08000 * 126.57655 * 359.96585 * 20 19 18 39 39 H 1.08002 * 126.58192 * 179.97438 * 21 20 19 40 40 H 1.07998 * 125.78389 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 6 4.2117 2.2690 -0.8030 6 6 3.5141 3.3989 -1.4360 7 8 2.3640 3.6510 -1.1316 8 7 4.1495 4.1546 -2.3533 9 6 3.4528 5.2762 -2.9881 10 6 3.6701 6.5269 -2.1761 11 1 4.2678 6.4902 -1.2773 12 6 3.1068 7.7184 -2.5812 13 7 2.3803 7.7635 -3.6765 14 14 3.3756 9.2687 -1.5743 15 1 4.8288 9.5655 -1.5009 16 1 2.6705 10.4058 -2.2185 17 1 2.8417 9.0672 -0.2034 18 6 5.5352 3.8512 -2.7196 19 6 5.5490 2.8845 -3.8756 20 6 5.5544 3.2168 -5.1790 21 6 5.5680 2.0069 -5.9102 22 6 5.5706 1.0074 -5.0099 23 8 5.5653 1.5450 -3.7791 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9562 -0.8900 31 1 4.0873 0.7712 0.6504 32 1 5.2636 2.1107 -0.9899 33 1 3.8440 5.4239 -3.9948 34 1 2.3862 5.0581 -3.0412 35 1 1.9843 8.6017 -3.9618 36 1 6.0442 4.7707 -3.0088 37 1 6.0471 3.4052 -1.8669 38 1 5.5493 4.2162 -5.5884 39 1 5.5749 1.9046 -6.9854 40 1 5.5805 -0.0481 -5.2381 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729352338.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:51 Heat of formation + Delta-G solvation = -23.540752 kcal Electronic energy + Delta-G solvation = -21588.362696 eV Core-core repulsion = 18369.723551 eV Total energy + Delta-G solvation = -3218.639145 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.42209 -40.80508 -37.35533 -36.22251 -34.88526 -33.84303 -33.19761 -31.51348 -29.64098 -27.72290 -26.75615 -25.22422 -22.65340 -22.54343 -22.05037 -21.50881 -19.52298 -18.79627 -18.12440 -17.93719 -17.17927 -16.62913 -16.43427 -16.09172 -15.79501 -15.14417 -14.95895 -14.50404 -14.25195 -14.06582 -13.82870 -13.72601 -13.68020 -13.56091 -13.29121 -13.09458 -12.91131 -12.64575 -12.51746 -12.29127 -12.13529 -11.83937 -11.73700 -11.48204 -10.81454 -10.64077 -10.43497 -10.09497 -9.59007 -9.34001 -8.21889 -6.36909 0.50167 0.78320 1.37429 1.41678 1.49041 1.70651 2.09537 2.31636 2.50541 2.56648 3.07886 3.75942 3.82951 3.93061 4.12364 4.17375 4.18641 4.24941 4.36592 4.48936 4.60904 4.65486 4.76030 4.92203 4.96568 4.97695 5.04854 5.05741 5.17642 5.21214 5.23248 5.31266 5.41045 5.48338 5.55732 5.63457 5.76973 5.82846 6.05582 6.24794 6.68811 6.75370 7.28395 7.47016 8.85325 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.010929 B = 0.006544 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.374033 B = 4277.837544 C = 6160.013909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.120 4.120 4 C -0.046 4.046 5 C -0.234 4.234 6 C 0.524 3.476 7 O -0.581 6.581 8 N -0.597 5.597 9 C 0.266 3.734 10 C -0.542 4.542 11 H 0.057 0.943 12 C 0.009 3.991 13 N -0.929 5.929 14 Si 0.968 3.032 15 H -0.258 1.258 16 H -0.279 1.279 17 H -0.278 1.278 18 C 0.190 3.810 19 C -0.042 4.042 20 C -0.214 4.214 21 C -0.230 4.230 22 C -0.035 4.035 23 O -0.179 6.179 24 H 0.035 0.965 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.166 0.834 32 H 0.153 0.847 33 H 0.021 0.979 34 H -0.006 1.006 35 H 0.267 0.733 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.138 0.862 39 H 0.167 0.833 40 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.049 -17.236 2.466 19.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.157 4.157 4 C -0.065 4.065 5 C -0.254 4.254 6 C 0.317 3.683 7 O -0.464 6.464 8 N -0.327 5.327 9 C 0.145 3.855 10 C -0.581 4.581 11 H 0.075 0.925 12 C -0.190 4.190 13 N -0.569 5.569 14 Si 0.792 3.208 15 H -0.183 1.183 16 H -0.205 1.205 17 H -0.204 1.204 18 C 0.067 3.933 19 C -0.094 4.094 20 C -0.235 4.235 21 C -0.249 4.249 22 C -0.102 4.102 23 O -0.075 6.075 24 H 0.054 0.946 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.184 0.816 32 H 0.170 0.830 33 H 0.039 0.961 34 H 0.012 0.988 35 H 0.076 0.924 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.156 0.844 39 H 0.184 0.816 40 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 7.365 -17.100 2.762 18.823 hybrid contribution -0.330 1.465 -0.385 1.551 sum 7.035 -15.635 2.377 17.309 Atomic orbital electron populations 1.21774 0.95876 1.02132 1.01238 1.21477 0.95925 0.94678 1.02786 1.21198 0.93214 0.97991 1.03254 1.24029 0.96081 0.94445 0.91977 1.22787 1.01989 0.97270 1.03395 1.19440 0.85890 0.83873 0.79065 1.90662 1.19604 1.72138 1.64001 1.48198 1.13906 1.30594 1.40005 1.18691 0.91190 0.83217 0.92367 1.21672 1.32437 0.93953 1.09996 0.92515 1.25861 0.94384 1.02540 0.96239 1.70055 1.34264 1.27986 1.24556 0.85463 0.79108 0.77926 0.78287 1.18266 1.20454 1.20364 1.20053 0.83254 0.95836 0.94115 1.23031 1.07253 0.81732 0.97356 1.21898 1.07701 1.00587 0.93282 1.22129 1.09210 0.91663 1.01920 1.24838 1.04326 1.00892 0.80162 1.83997 1.71247 1.19613 1.32664 0.94565 0.90886 0.92771 0.92012 0.89730 0.91467 0.91802 0.81623 0.82962 0.96075 0.98834 0.92434 0.87005 0.86365 0.84397 0.81576 0.74054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.91 71.98 0.71 -2.69 16 2 C -0.11 -2.47 5.92 30.59 0.18 -2.29 16 3 C -0.12 -3.63 4.54 29.85 0.14 -3.49 16 4 C -0.05 -1.21 9.56 24.52 0.23 -0.97 16 5 C -0.23 -7.34 9.23 23.43 0.22 -7.12 16 6 C 0.52 23.18 7.39 86.57 0.64 23.82 16 7 O -0.58 -30.78 12.96 -4.06 -0.05 -30.84 16 8 N -0.60 -26.66 2.44 -834.80 -2.04 -28.70 16 9 C 0.27 14.80 5.16 85.63 0.44 15.25 16 10 C -0.54 -31.59 9.39 25.60 0.24 -31.35 16 11 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 12 C 0.01 0.51 5.46 84.66 0.46 0.97 16 13 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 14 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 15 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 18 C 0.19 6.42 5.69 85.63 0.49 6.90 16 19 C -0.04 -1.37 6.90 24.83 0.17 -1.20 16 20 C -0.21 -6.94 10.81 22.19 0.24 -6.70 16 21 C -0.23 -5.96 10.91 22.19 0.24 -5.72 16 22 C -0.03 -0.79 12.09 66.97 0.81 0.02 16 23 O -0.18 -5.10 10.65 -2.50 -0.03 -5.13 16 24 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.06 2.57 5.34 -2.39 -0.01 2.56 16 31 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.15 3.79 6.17 -2.91 -0.02 3.77 16 33 H 0.02 1.20 8.07 -2.39 -0.02 1.18 16 34 H -0.01 -0.42 7.42 -2.39 -0.02 -0.44 16 35 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.11 3.74 8.07 -2.39 -0.02 3.72 16 37 H 0.12 3.14 6.02 -2.39 -0.01 3.13 16 38 H 0.14 4.64 8.06 -2.91 -0.02 4.61 16 39 H 0.17 3.39 8.06 -2.91 -0.02 3.37 16 40 H 0.24 2.96 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -76.30 341.45 6.43 -69.88 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 1.02 Total: 18.78 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 5.22 Total: -14.57 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -1.75 Total: -85.39 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.08 Total: -35.96 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -76.30 6.43 -69.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729352338.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.336 kcal (2) G-P(sol) polarization free energy of solvation -76.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds