Wall clock time and date at job start Mon Mar 30 2020 02:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47249 * 2 1 4 4 C 1.52998 * 109.47144 * 120.00291 * 2 1 3 5 5 O 1.42902 * 109.46932 * 64.99908 * 4 2 1 6 6 C 1.35660 * 116.99879 * 179.97438 * 5 4 2 7 7 C 1.38689 * 120.15316 * 359.95327 * 6 5 4 8 8 C 1.38078 * 120.08768 * 180.02562 * 7 6 5 9 9 C 1.38559 * 120.40456 * 0.02562 * 8 7 6 10 10 C 1.37769 * 120.30279 * 0.02562 * 9 8 7 11 11 C 1.39770 * 119.90602 * 359.97438 * 10 9 8 12 12 C 1.47430 * 120.19556 * 180.02562 * 11 10 9 13 13 O 1.21627 * 119.99791 * 234.68598 * 12 11 10 14 14 N 1.34777 * 120.00115 * 54.69164 * 12 11 10 15 15 C 1.46499 * 120.00046 * 5.67892 * 14 12 11 16 16 C 1.36908 * 119.99870 * 185.68039 * 14 12 11 17 17 H 1.08000 * 120.00003 * 5.21674 * 16 14 12 18 18 C 1.39023 * 119.99729 * 185.21854 * 16 14 12 19 19 N 1.31385 * 120.00295 * 5.21797 * 18 16 14 20 20 Si 1.86803 * 119.99800 * 185.22136 * 18 16 14 21 21 H 1.48500 * 109.46971 * 60.00001 * 20 18 16 22 22 H 1.48497 * 109.47145 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47145 * 299.99813 * 20 18 16 24 24 H 1.08999 * 109.47732 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46842 * 299.99560 * 1 2 3 26 26 H 1.09002 * 109.47407 * 59.99361 * 1 2 3 27 27 H 1.09004 * 109.46842 * 240.00440 * 2 1 3 28 28 H 1.09002 * 109.47392 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47490 * 300.00066 * 3 2 1 30 30 H 1.09004 * 109.46839 * 60.00438 * 3 2 1 31 31 H 1.08994 * 109.47186 * 304.99873 * 4 2 1 32 32 H 1.08999 * 109.46914 * 184.99635 * 4 2 1 33 33 H 1.07994 * 119.95265 * 0.04176 * 7 6 5 34 34 H 1.08002 * 119.79435 * 180.28125 * 8 7 6 35 35 H 1.08000 * 119.84831 * 180.02562 * 9 8 7 36 36 H 1.08007 * 120.04716 * 180.02562 * 10 9 8 37 37 H 1.09001 * 109.46863 * 355.12100 * 15 14 12 38 38 H 1.09005 * 109.46752 * 115.11649 * 15 14 12 39 39 H 1.08995 * 109.46964 * 235.11591 * 15 14 12 40 40 H 0.96991 * 119.99737 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6619 -2.0982 1.1918 6 6 2.0398 -2.8844 2.2308 7 6 2.7611 -2.3456 3.2858 8 6 3.1455 -3.1472 4.3423 9 6 2.8157 -4.4929 4.3578 10 6 2.1007 -5.0454 3.3179 11 6 1.7050 -4.2458 2.2419 12 6 0.9391 -4.8303 1.1260 13 8 1.3419 -4.7125 -0.0156 14 7 -0.2075 -5.4951 1.3708 15 6 -0.7580 -5.5309 2.7279 16 6 -0.8577 -6.1368 0.3511 17 1 -0.4102 -6.1823 -0.6307 18 6 -2.0941 -6.7300 0.5797 19 7 -2.6859 -6.5877 1.7440 20 14 -2.9140 -7.7296 -0.7688 21 1 -2.0353 -8.8656 -1.1465 22 1 -4.2139 -8.2523 -0.2767 23 1 -3.1441 -6.8661 -1.9547 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9562 0.8901 31 1 1.6054 -0.2619 2.1369 32 1 3.1263 -0.6444 1.2950 33 1 3.0221 -1.2977 3.2810 34 1 3.7031 -2.7217 5.1636 35 1 3.1207 -5.1115 5.1889 36 1 1.8455 -6.0948 3.3344 37 1 -0.0652 -5.0437 3.4140 38 1 -1.7146 -5.0086 2.7459 39 1 -0.9039 -6.5669 3.0335 40 1 -3.5487 -7.0012 1.9032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731342436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:13 Heat of formation + Delta-G solvation = -39.653716 kcal Electronic energy + Delta-G solvation = -21939.716222 eV Core-core repulsion = 18720.378366 eV Total energy + Delta-G solvation = -3219.337856 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.03468 -38.21912 -37.02002 -35.10415 -34.54102 -31.74929 -30.50850 -29.59106 -27.11487 -26.57072 -26.15576 -24.64975 -22.70209 -21.84559 -20.21446 -19.29655 -17.69690 -16.88504 -16.31178 -15.99229 -15.55570 -14.95745 -14.44295 -14.33225 -14.07502 -13.94473 -13.71239 -13.30366 -12.97303 -12.57517 -12.35109 -12.30305 -12.10854 -11.69131 -11.53847 -11.27939 -11.17185 -11.00818 -10.95306 -10.84060 -10.73089 -10.47707 -10.45609 -10.36948 -10.13703 -9.00911 -8.56517 -8.29136 -7.80614 -7.75109 -6.19836 -3.73884 1.51990 1.77636 3.21571 3.26054 3.30825 3.47766 3.83216 4.12439 4.29116 4.78867 4.84949 4.90020 5.09947 5.11977 5.18956 5.27488 5.36185 5.40112 5.49782 5.56052 5.68562 5.73454 5.84561 5.85592 5.91569 5.97244 6.07982 6.25543 6.33009 6.48851 6.51097 6.61832 6.66525 6.80972 7.10105 7.15371 7.47932 7.60148 7.79439 8.13154 8.55742 9.24796 9.50160 10.07610 10.73779 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015470 B = 0.005959 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.536847 B = 4697.497486 C = 6004.572731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.143 4.143 4 C 0.062 3.938 5 O -0.288 6.288 6 C 0.161 3.839 7 C -0.219 4.219 8 C -0.082 4.082 9 C -0.166 4.166 10 C -0.057 4.057 11 C -0.119 4.119 12 C 0.482 3.518 13 O -0.583 6.583 14 N -0.438 5.438 15 C 0.111 3.889 16 C -0.294 4.294 17 H 0.104 0.896 18 C 0.025 3.975 19 N -0.886 5.886 20 Si 0.932 3.068 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.273 1.273 24 H 0.069 0.931 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.083 0.917 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.029 0.971 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.487 10.736 5.593 14.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.200 4.200 4 C -0.013 4.013 5 O -0.200 6.200 6 C 0.114 3.886 7 C -0.238 4.238 8 C -0.101 4.101 9 C -0.184 4.184 10 C -0.076 4.076 11 C -0.123 4.123 12 C 0.270 3.730 13 O -0.469 6.469 14 N -0.156 5.156 15 C -0.033 4.033 16 C -0.422 4.422 17 H 0.122 0.878 18 C -0.177 4.177 19 N -0.527 5.527 20 Si 0.759 3.241 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.198 1.198 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.149 0.851 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.328 10.659 4.926 13.841 hybrid contribution -0.434 -0.352 -0.186 0.589 sum 6.894 10.307 4.739 13.275 Atomic orbital electron populations 1.21810 0.94201 1.03264 1.01169 1.21100 0.97200 0.95302 0.97778 1.21772 1.00922 0.95129 1.02215 1.22874 0.99046 0.80497 0.98920 1.86239 1.73214 1.19836 1.40734 1.18975 0.93081 0.89821 0.86748 1.21086 1.05776 1.00521 0.96409 1.20874 0.98373 0.93712 0.97121 1.20892 1.02561 0.95376 0.99606 1.21180 0.95179 0.99659 0.91585 1.19621 1.03771 0.91262 0.97654 1.17516 0.83729 0.84054 0.87726 1.90612 1.70984 1.63307 1.21958 1.43617 1.19554 1.43573 1.08816 1.21885 0.97405 1.02153 0.81817 1.19779 1.00974 1.28718 0.92747 0.87821 1.25336 0.96410 0.98186 0.97736 1.70147 1.16482 1.43932 1.22135 0.85895 0.78072 0.79771 0.80353 1.19881 1.20910 1.19839 0.91182 0.93027 0.92705 0.89830 0.92569 0.91872 0.92558 0.92397 0.92418 0.85780 0.86236 0.86007 0.85121 0.95247 0.90896 0.91919 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.09 37.16 0.34 -1.69 16 2 C -0.10 -1.24 3.16 -90.62 -0.29 -1.52 16 3 C -0.14 -1.36 9.19 37.16 0.34 -1.01 16 4 C 0.06 0.88 4.12 37.16 0.15 1.04 16 5 O -0.29 -5.73 8.89 -21.20 -0.19 -5.92 16 6 C 0.16 3.15 6.69 -38.68 -0.26 2.89 16 7 C -0.22 -3.36 9.03 -39.47 -0.36 -3.71 16 8 C -0.08 -1.13 10.03 -39.52 -0.40 -1.53 16 9 C -0.17 -2.44 10.02 -39.63 -0.40 -2.83 16 10 C -0.06 -1.04 7.55 -39.18 -0.30 -1.33 16 11 C -0.12 -2.59 4.69 -104.84 -0.49 -3.08 16 12 C 0.48 12.83 6.74 -12.52 -0.08 12.75 16 13 O -0.58 -17.53 16.39 2.73 0.04 -17.49 16 14 N -0.44 -11.90 3.02 -123.42 -0.37 -12.27 16 15 C 0.11 2.66 8.27 59.85 0.49 3.16 16 16 C -0.29 -8.47 9.55 -14.99 -0.14 -8.62 16 17 H 0.10 3.12 7.20 -52.49 -0.38 2.74 16 18 C 0.03 0.67 5.42 -17.45 -0.09 0.58 16 19 N -0.89 -23.71 9.52 55.50 0.53 -23.19 16 20 Si 0.93 21.17 29.56 -169.99 -5.02 16.15 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H 0.07 1.21 7.82 -51.93 -0.41 0.81 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.73 7.66 -51.93 -0.40 0.33 16 32 H 0.06 0.72 7.66 -51.93 -0.40 0.33 16 33 H 0.12 1.54 6.30 -52.49 -0.33 1.21 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.13 2.32 7.79 -52.48 -0.41 1.91 16 37 H 0.03 0.62 4.81 -51.93 -0.25 0.37 16 38 H 0.07 1.87 6.89 -51.93 -0.36 1.51 16 39 H 0.06 1.53 7.24 -51.93 -0.38 1.16 16 40 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 328.88 15.07 4.96 4.96 Total: -1.00 -32.70 328.88 -7.35 -40.05 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.82 Total: 2.63 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -1.48 Total: -4.92 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.16 Total: -35.46 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.14 Total: -23.41 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.70 -7.35 -40.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731342436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.398 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds