Wall clock time and date at job start Mon Mar 30 2020 02:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47249 * 2 1 4 4 C 1.52998 * 109.47144 * 120.00291 * 2 1 3 5 5 O 1.42902 * 109.46932 * 64.99908 * 4 2 1 6 6 C 1.35660 * 116.99879 * 179.97438 * 5 4 2 7 7 C 1.38689 * 120.15316 * 359.95327 * 6 5 4 8 8 C 1.38078 * 120.08768 * 180.02562 * 7 6 5 9 9 C 1.38559 * 120.40456 * 0.02562 * 8 7 6 10 10 C 1.37769 * 120.30279 * 0.02562 * 9 8 7 11 11 C 1.39770 * 119.90602 * 359.97438 * 10 9 8 12 12 C 1.47430 * 120.19556 * 180.02562 * 11 10 9 13 13 O 1.21627 * 119.99791 * 234.68598 * 12 11 10 14 14 N 1.34777 * 120.00115 * 54.69164 * 12 11 10 15 15 C 1.46499 * 120.00046 * 5.67892 * 14 12 11 16 16 C 1.36908 * 119.99870 * 185.68039 * 14 12 11 17 17 H 1.08000 * 120.00003 * 5.21674 * 16 14 12 18 18 C 1.39023 * 119.99729 * 185.21854 * 16 14 12 19 19 N 1.31385 * 120.00295 * 5.21797 * 18 16 14 20 20 Si 1.86803 * 119.99800 * 185.22136 * 18 16 14 21 21 H 1.48500 * 109.46971 * 60.00001 * 20 18 16 22 22 H 1.48497 * 109.47145 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47145 * 299.99813 * 20 18 16 24 24 H 1.08999 * 109.47732 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46842 * 299.99560 * 1 2 3 26 26 H 1.09002 * 109.47407 * 59.99361 * 1 2 3 27 27 H 1.09004 * 109.46842 * 240.00440 * 2 1 3 28 28 H 1.09002 * 109.47392 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47490 * 300.00066 * 3 2 1 30 30 H 1.09004 * 109.46839 * 60.00438 * 3 2 1 31 31 H 1.08994 * 109.47186 * 304.99873 * 4 2 1 32 32 H 1.08999 * 109.46914 * 184.99635 * 4 2 1 33 33 H 1.07994 * 119.95265 * 0.04176 * 7 6 5 34 34 H 1.08002 * 119.79435 * 180.28125 * 8 7 6 35 35 H 1.08000 * 119.84831 * 180.02562 * 9 8 7 36 36 H 1.08007 * 120.04716 * 180.02562 * 10 9 8 37 37 H 1.09001 * 109.46863 * 355.12100 * 15 14 12 38 38 H 1.09005 * 109.46752 * 115.11649 * 15 14 12 39 39 H 1.08995 * 109.46964 * 235.11591 * 15 14 12 40 40 H 0.96991 * 119.99737 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6619 -2.0982 1.1918 6 6 2.0398 -2.8844 2.2308 7 6 2.7611 -2.3456 3.2858 8 6 3.1455 -3.1472 4.3423 9 6 2.8157 -4.4929 4.3578 10 6 2.1007 -5.0454 3.3179 11 6 1.7050 -4.2458 2.2419 12 6 0.9391 -4.8303 1.1260 13 8 1.3419 -4.7125 -0.0156 14 7 -0.2075 -5.4951 1.3708 15 6 -0.7580 -5.5309 2.7279 16 6 -0.8577 -6.1368 0.3511 17 1 -0.4102 -6.1823 -0.6307 18 6 -2.0941 -6.7300 0.5797 19 7 -2.6859 -6.5877 1.7440 20 14 -2.9140 -7.7296 -0.7688 21 1 -2.0353 -8.8656 -1.1465 22 1 -4.2139 -8.2523 -0.2767 23 1 -3.1441 -6.8661 -1.9547 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9562 0.8901 31 1 1.6054 -0.2619 2.1369 32 1 3.1263 -0.6444 1.2950 33 1 3.0221 -1.2977 3.2810 34 1 3.7031 -2.7217 5.1636 35 1 3.1207 -5.1115 5.1889 36 1 1.8455 -6.0948 3.3344 37 1 -0.0652 -5.0437 3.4140 38 1 -1.7146 -5.0086 2.7459 39 1 -0.9039 -6.5669 3.0335 40 1 -3.5487 -7.0012 1.9032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731342436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:12 Heat of formation + Delta-G solvation = -59.869600 kcal Electronic energy + Delta-G solvation = -21940.592848 eV Core-core repulsion = 18720.378366 eV Total energy + Delta-G solvation = -3220.214482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.47211 -39.96923 -38.41746 -36.72116 -36.13682 -33.74394 -32.03078 -30.87335 -28.34230 -28.10164 -27.49782 -26.58785 -24.26114 -23.12107 -21.47987 -20.82235 -19.18184 -18.85744 -18.06546 -17.28681 -16.90722 -16.69526 -16.07360 -15.76215 -15.63943 -15.29047 -15.19675 -14.80670 -14.35014 -14.09090 -13.73643 -13.60062 -13.46840 -13.27909 -13.02931 -12.82645 -12.69019 -12.60853 -12.34882 -12.17179 -12.15105 -12.08366 -12.05392 -11.60009 -11.54718 -11.08733 -10.44832 -9.92985 -9.80564 -9.12190 -8.27508 -5.93316 0.17872 0.49448 1.37152 1.37687 1.49322 2.03262 2.23834 2.28960 2.79165 3.06488 3.17106 3.72996 3.82457 3.91114 4.00072 4.08751 4.17755 4.25590 4.43493 4.49650 4.52045 4.61233 4.62868 4.66898 4.76261 4.91335 4.97258 4.98295 5.11924 5.16451 5.29650 5.34498 5.37959 5.39325 5.43022 5.45771 5.54633 5.90061 5.99480 6.44600 6.57336 7.12991 7.43605 8.01130 8.64087 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015470 B = 0.005959 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.536847 B = 4697.497486 C = 6004.572731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.133 4.133 4 C 0.054 3.946 5 O -0.331 6.331 6 C 0.142 3.858 7 C -0.211 4.211 8 C -0.060 4.060 9 C -0.155 4.155 10 C -0.066 4.066 11 C -0.168 4.168 12 C 0.475 3.525 13 O -0.636 6.636 14 N -0.454 5.454 15 C 0.129 3.871 16 C -0.343 4.343 17 H 0.074 0.926 18 C -0.005 4.005 19 N -0.895 5.895 20 Si 0.997 3.003 21 H -0.269 1.269 22 H -0.263 1.263 23 H -0.276 1.276 24 H 0.020 0.980 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.159 0.841 34 H 0.172 0.828 35 H 0.162 0.838 36 H 0.123 0.877 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.703 12.369 8.333 17.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.190 4.190 4 C -0.020 4.020 5 O -0.245 6.245 6 C 0.094 3.906 7 C -0.229 4.229 8 C -0.077 4.077 9 C -0.173 4.173 10 C -0.085 4.085 11 C -0.172 4.172 12 C 0.265 3.735 13 O -0.525 6.525 14 N -0.171 5.171 15 C -0.013 4.013 16 C -0.471 4.471 17 H 0.092 0.908 18 C -0.206 4.206 19 N -0.535 5.535 20 Si 0.820 3.180 21 H -0.194 1.194 22 H -0.187 1.187 23 H -0.201 1.201 24 H 0.039 0.961 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.177 0.823 34 H 0.190 0.810 35 H 0.180 0.820 36 H 0.141 0.859 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.537 12.299 7.715 16.843 hybrid contribution -0.742 -0.777 -0.963 1.443 sum 7.795 11.522 6.752 15.464 Atomic orbital electron populations 1.21777 0.95267 1.00405 1.02702 1.21167 0.96349 0.97536 0.96528 1.21712 1.01696 0.92148 1.03451 1.23226 1.00457 0.78203 1.00134 1.86206 1.74073 1.22388 1.41815 1.19267 0.94033 0.89204 0.88050 1.21488 1.03995 1.02412 0.95037 1.21512 0.96096 0.92890 0.97244 1.21327 1.00475 0.96496 0.98976 1.21234 0.96236 0.99199 0.91872 1.19426 1.06639 0.93228 0.97900 1.18427 0.83451 0.82907 0.88665 1.90533 1.72233 1.65002 1.24729 1.43842 1.19950 1.43850 1.09439 1.21692 0.97014 1.01484 0.81140 1.19724 1.02704 1.32002 0.92638 0.90812 1.26134 0.95986 0.98203 1.00228 1.70238 1.16683 1.43478 1.23084 0.84956 0.77645 0.78085 0.77355 1.19399 1.18709 1.20150 0.96100 0.91329 0.91332 0.92364 0.91255 0.91041 0.90922 0.90297 0.90415 0.82336 0.81048 0.82032 0.85872 0.92254 0.92948 0.92802 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 9.09 71.98 0.65 -3.45 16 2 C -0.10 -2.52 3.16 -10.80 -0.03 -2.56 16 3 C -0.13 -2.20 9.19 71.98 0.66 -1.54 16 4 C 0.05 1.49 4.12 71.98 0.30 1.78 16 5 O -0.33 -13.68 8.89 -87.35 -0.78 -14.45 16 6 C 0.14 5.53 6.69 22.86 0.15 5.68 16 7 C -0.21 -5.70 9.03 22.34 0.20 -5.50 16 8 C -0.06 -1.31 10.03 22.31 0.22 -1.08 16 9 C -0.15 -3.92 10.02 22.24 0.22 -3.70 16 10 C -0.07 -2.38 7.55 22.53 0.17 -2.21 16 11 C -0.17 -7.55 4.69 -20.01 -0.09 -7.64 16 12 C 0.48 27.18 6.74 86.66 0.58 27.77 16 13 O -0.64 -41.62 16.39 -1.71 -0.03 -41.65 16 14 N -0.45 -26.29 3.02 -662.64 -2.00 -28.29 16 15 C 0.13 6.49 8.27 127.77 1.06 7.54 16 16 C -0.34 -21.11 9.55 84.09 0.80 -20.31 16 17 H 0.07 4.85 7.20 -2.91 -0.02 4.83 16 18 C 0.00 -0.26 5.42 84.95 0.46 0.21 16 19 N -0.90 -48.94 9.52 21.68 0.21 -48.73 16 20 Si 1.00 44.46 29.56 68.60 2.03 46.49 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 24 H 0.02 0.77 7.82 -2.39 -0.02 0.75 16 25 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 27 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.08 1.79 7.66 -2.39 -0.02 1.77 16 32 H 0.08 1.78 7.66 -2.39 -0.02 1.76 16 33 H 0.16 3.13 6.30 -2.91 -0.02 3.11 16 34 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 35 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 36 H 0.12 4.44 7.79 -2.91 -0.02 4.42 16 37 H 0.06 2.57 4.81 -2.39 -0.01 2.56 16 38 H 0.05 2.80 6.89 -2.38 -0.02 2.78 16 39 H 0.05 2.73 7.24 -2.39 -0.02 2.71 16 40 H 0.27 13.89 8.31 -92.72 -0.77 13.12 16 Total: -1.00 -79.49 328.88 5.81 -73.67 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 1.02 Total: 17.96 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 5.36 Total: -5.00 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -1.79 Total: -77.03 kcal Atomic # 8 Polarization: -55.30 SS G_CDS: -0.80 Total: -56.10 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -79.49 5.81 -73.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731342436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.805 kcal (2) G-P(sol) polarization free energy of solvation -79.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds