Wall clock time and date at job start Mon Mar 30 2020 01:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46920 * 2 1 4 4 C 1.52999 * 109.46987 * 240.00590 * 2 1 3 5 5 C 1.52994 * 109.47344 * 120.00248 * 2 1 3 6 6 H 1.08996 * 109.47308 * 185.20746 * 5 2 1 7 7 O 1.42906 * 109.47155 * 65.20459 * 5 2 1 8 8 C 1.50700 * 109.47116 * 305.20993 * 5 2 1 9 9 O 1.21283 * 120.00417 * 107.13194 * 8 5 2 10 10 N 1.34782 * 119.99782 * 287.12840 * 8 5 2 11 11 C 1.39235 * 119.99917 * 180.21699 * 10 8 5 12 12 C 1.39474 * 119.83773 * 30.31721 * 11 10 8 13 13 C 1.36370 * 120.17019 * 179.71591 * 12 11 10 14 14 C 1.40873 * 119.82861 * 0.57987 * 13 12 11 15 15 C 1.41154 * 120.16414 * 179.67416 * 14 13 12 16 16 H 1.08001 * 119.99857 * 207.61934 * 15 14 13 17 17 C 1.39906 * 120.00053 * 27.61882 * 15 14 13 18 18 N 1.30868 * 119.99932 * 12.53332 * 17 15 14 19 19 Si 1.86797 * 119.99886 * 192.53858 * 17 15 14 20 20 H 1.48502 * 109.47335 * 89.99635 * 19 17 15 21 21 H 1.48499 * 109.46977 * 209.99767 * 19 17 15 22 22 H 1.48506 * 109.47081 * 329.99705 * 19 17 15 23 23 C 1.40868 * 119.66876 * 359.69731 * 14 13 12 24 24 C 1.36373 * 119.82942 * 359.97438 * 23 14 13 25 25 H 1.09004 * 109.46778 * 299.99754 * 1 2 3 26 26 H 1.08998 * 109.47403 * 59.99589 * 1 2 3 27 27 H 1.08997 * 109.47446 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47125 * 172.19884 * 3 2 1 29 29 H 1.08996 * 109.47578 * 292.19692 * 3 2 1 30 30 H 1.08999 * 109.47125 * 52.20316 * 3 2 1 31 31 H 1.09010 * 109.46688 * 299.99757 * 4 2 1 32 32 H 1.08998 * 109.47671 * 59.99457 * 4 2 1 33 33 H 1.08994 * 109.47305 * 179.97438 * 4 2 1 34 34 H 0.96701 * 114.00087 * 300.00184 * 7 5 2 35 35 H 0.97002 * 119.99912 * 0.21081 * 10 8 5 36 36 H 1.08000 * 119.91184 * 0.02562 * 12 11 10 37 37 H 1.08004 * 120.08937 * 180.25428 * 13 12 11 38 38 H 0.97003 * 119.99907 * 180.02562 * 18 17 15 39 39 H 1.08004 * 120.08006 * 179.97438 * 23 14 13 40 40 H 1.08006 * 119.91212 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2491 6 1 3.1260 -0.6412 1.2970 7 8 1.6661 -2.0993 1.1896 8 6 1.4352 -0.0893 2.4763 9 8 0.5719 -0.6734 3.0963 10 7 1.8536 1.1250 2.8847 11 6 1.2980 1.7070 4.0211 12 6 0.8353 0.8985 5.0591 13 6 0.2951 1.4614 6.1776 14 6 0.1940 2.8629 6.2778 15 6 -0.3701 3.4528 7.4293 16 1 -0.8544 4.4157 7.3607 17 6 -0.3020 2.7902 8.6596 18 7 0.4858 1.7550 8.8025 19 14 -1.3354 3.3831 10.0983 20 1 -2.6503 2.6931 10.0810 21 1 -0.6333 3.0785 11.3709 22 1 -1.5442 4.8492 9.9868 23 6 0.6583 3.6727 5.2227 24 6 1.2022 3.0954 4.1133 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1210 1.4457 0.1395 29 1 1.7951 1.9145 -0.9514 30 1 1.5673 1.9950 0.8120 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2073 -2.1393 33 1 3.1299 -0.7208 -1.2496 34 1 0.7114 -2.2462 1.1451 35 1 2.5420 1.5935 2.3871 36 1 0.9095 -0.1760 4.9790 37 1 -0.0590 0.8342 6.9824 38 1 0.5328 1.2953 9.6554 39 1 0.5836 4.7479 5.2923 40 1 1.5589 3.7150 3.3037 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735842536.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:55 Heat of formation + Delta-G solvation = -77.741055 kcal Electronic energy + Delta-G solvation = -21766.936386 eV Core-core repulsion = 18545.946939 eV Total energy + Delta-G solvation = -3220.989447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.47645 -38.10631 -36.77526 -35.15875 -34.22578 -32.91421 -29.59696 -29.25673 -27.52930 -27.45753 -26.98365 -24.66776 -21.62709 -21.18246 -19.91489 -19.34471 -17.77565 -17.31335 -16.45018 -16.11873 -15.53902 -15.12156 -14.65910 -14.37408 -14.01160 -13.59686 -13.44331 -12.97576 -12.66993 -12.60704 -12.37433 -12.24841 -12.05010 -11.92185 -11.76274 -11.58146 -11.38577 -11.13086 -11.08179 -11.03243 -10.97707 -10.69130 -10.36417 -9.86187 -9.63388 -9.37328 -9.03620 -8.74963 -7.53187 -6.95989 -6.69786 -4.31326 2.51884 2.97141 3.07721 3.10380 3.11696 3.32939 3.65079 3.94492 4.27534 4.47535 4.59042 4.67078 4.81478 5.04246 5.23953 5.34417 5.45268 5.53870 5.61723 5.69832 5.72717 5.80345 5.85738 5.99263 6.10787 6.15538 6.20097 6.39166 6.77325 6.95350 7.04123 7.15017 7.28192 7.47942 7.60171 7.66836 7.94863 8.06024 8.19578 8.30857 8.63534 8.71664 8.89179 8.99476 10.22160 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038310 B = 0.003908 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.712269 B = 7163.478008 C = 7529.976087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.158 4.158 4 C -0.134 4.134 5 C 0.101 3.899 6 H 0.116 0.884 7 O -0.538 6.538 8 C 0.473 3.527 9 O -0.525 6.525 10 N -0.646 5.646 11 C -0.005 4.005 12 C -0.092 4.092 13 C -0.151 4.151 14 C 0.104 3.896 15 C -0.459 4.459 16 H 0.077 0.923 17 C 0.072 3.928 18 N -0.797 5.797 19 Si 0.911 3.089 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.212 4.212 24 C -0.109 4.109 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.381 0.619 35 H 0.395 0.605 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.280 0.720 39 H 0.096 0.904 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.214 -2.044 -14.776 15.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.215 4.215 4 C -0.191 4.191 5 C 0.038 3.962 6 H 0.134 0.866 7 O -0.344 6.344 8 C 0.259 3.741 9 O -0.402 6.402 10 N -0.291 5.291 11 C -0.098 4.098 12 C -0.112 4.112 13 C -0.170 4.170 14 C 0.101 3.899 15 C -0.489 4.489 16 H 0.095 0.905 17 C -0.145 4.145 18 N -0.422 5.422 19 Si 0.736 3.264 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.232 4.232 24 C -0.129 4.129 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.231 0.769 35 H 0.230 0.770 36 H 0.128 0.872 37 H 0.140 0.860 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.326 -2.750 -14.143 14.787 hybrid contribution -0.568 0.666 0.493 1.004 sum 2.758 -2.084 -13.650 14.081 Atomic orbital electron populations 1.21946 0.93754 1.02226 1.02804 1.21130 0.96865 0.96228 0.95178 1.22102 1.01197 0.94939 1.03277 1.21769 1.01011 1.00627 0.95692 1.21936 1.00181 0.82830 0.91223 0.86609 1.86533 1.29680 1.21923 1.96229 1.21346 0.83608 0.82305 0.86807 1.90688 1.31318 1.61985 1.56212 1.43248 1.39735 1.18656 1.27421 1.17261 1.12295 0.91602 0.88600 1.20634 0.99593 0.98677 0.92334 1.21066 1.03849 0.95220 0.96912 1.17688 0.88745 0.91742 0.91692 1.19553 1.32363 1.04771 0.92229 0.90472 1.25913 0.93971 0.94098 1.00488 1.69821 1.29264 1.16976 1.26177 0.86267 0.80365 0.80161 0.79629 1.19320 1.20315 1.18678 1.20567 1.08032 0.97809 0.96810 1.20002 1.02740 0.92026 0.98104 0.91712 0.92009 0.92389 0.92120 0.91706 0.91180 0.91831 0.92529 0.92515 0.76920 0.77029 0.87200 0.86046 0.90886 0.88628 0.89252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 7.94 37.16 0.29 -1.38 16 2 C -0.09 -0.95 0.63 -154.51 -0.10 -1.05 16 3 C -0.16 -1.46 7.23 37.16 0.27 -1.19 16 4 C -0.13 -1.14 8.27 37.16 0.31 -0.84 16 5 C 0.10 1.29 2.76 -27.89 -0.08 1.21 16 6 H 0.12 1.30 8.13 -51.93 -0.42 0.87 16 7 O -0.54 -7.29 12.16 -54.80 -0.67 -7.95 16 8 C 0.47 8.11 5.24 -10.98 -0.06 8.05 16 9 O -0.53 -11.19 13.55 -14.02 -0.19 -11.38 16 10 N -0.65 -11.09 4.22 -9.74 -0.04 -11.13 16 11 C -0.01 -0.12 6.37 -83.57 -0.53 -0.65 16 12 C -0.09 -2.32 8.62 -39.79 -0.34 -2.66 16 13 C -0.15 -4.06 8.61 -39.26 -0.34 -4.40 16 14 C 0.10 2.79 5.56 -106.80 -0.59 2.20 16 15 C -0.46 -12.23 9.05 -37.85 -0.34 -12.58 16 16 H 0.08 1.96 7.88 -52.49 -0.41 1.55 16 17 C 0.07 1.84 5.22 -17.34 -0.09 1.75 16 18 N -0.80 -20.94 10.85 55.55 0.60 -20.34 16 19 Si 0.91 18.88 29.58 -169.99 -5.03 13.85 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 23 C -0.21 -5.11 9.74 -39.26 -0.38 -5.50 16 24 C -0.11 -2.35 9.88 -39.79 -0.39 -2.74 16 25 H 0.06 0.91 7.07 -51.93 -0.37 0.54 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.60 6.89 -51.93 -0.36 0.24 16 28 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 29 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 30 H 0.07 0.77 6.08 -51.93 -0.32 0.45 16 31 H 0.06 0.57 7.55 -51.92 -0.39 0.17 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.38 4.63 7.20 45.56 0.33 4.95 16 35 H 0.39 5.36 6.90 -40.82 -0.28 5.08 16 36 H 0.11 2.81 5.99 -52.49 -0.31 2.49 16 37 H 0.12 3.42 6.19 -52.48 -0.32 3.10 16 38 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 39 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 40 H 0.09 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 321.76 15.07 4.85 4.85 Total: -1.00 -30.24 321.76 -7.80 -38.05 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -4.95 Total: 13.82 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -2.38 Total: -19.77 kcal Atomic # 7 Polarization: -32.03 SS G_CDS: 0.56 Total: -31.47 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.86 Total: -19.33 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.24 -7.80 -38.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735842536.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.692 kcal (2) G-P(sol) polarization free energy of solvation -30.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds