Wall clock time and date at job start Mon Mar 30 2020 01:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46920 * 2 1 4 4 C 1.52999 * 109.46987 * 240.00590 * 2 1 3 5 5 C 1.52994 * 109.47344 * 120.00248 * 2 1 3 6 6 H 1.08996 * 109.47308 * 185.20746 * 5 2 1 7 7 O 1.42906 * 109.47155 * 65.20459 * 5 2 1 8 8 C 1.50700 * 109.47116 * 305.20993 * 5 2 1 9 9 O 1.21283 * 120.00417 * 107.13194 * 8 5 2 10 10 N 1.34782 * 119.99782 * 287.12840 * 8 5 2 11 11 C 1.39235 * 119.99917 * 180.21699 * 10 8 5 12 12 C 1.39474 * 119.83773 * 30.31721 * 11 10 8 13 13 C 1.36370 * 120.17019 * 179.71591 * 12 11 10 14 14 C 1.40873 * 119.82861 * 0.57987 * 13 12 11 15 15 C 1.41154 * 120.16414 * 179.67416 * 14 13 12 16 16 H 1.08001 * 119.99857 * 207.61934 * 15 14 13 17 17 C 1.39906 * 120.00053 * 27.61882 * 15 14 13 18 18 N 1.30868 * 119.99932 * 12.53332 * 17 15 14 19 19 Si 1.86797 * 119.99886 * 192.53858 * 17 15 14 20 20 H 1.48502 * 109.47335 * 89.99635 * 19 17 15 21 21 H 1.48499 * 109.46977 * 209.99767 * 19 17 15 22 22 H 1.48506 * 109.47081 * 329.99705 * 19 17 15 23 23 C 1.40868 * 119.66876 * 359.69731 * 14 13 12 24 24 C 1.36373 * 119.82942 * 359.97438 * 23 14 13 25 25 H 1.09004 * 109.46778 * 299.99754 * 1 2 3 26 26 H 1.08998 * 109.47403 * 59.99589 * 1 2 3 27 27 H 1.08997 * 109.47446 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47125 * 172.19884 * 3 2 1 29 29 H 1.08996 * 109.47578 * 292.19692 * 3 2 1 30 30 H 1.08999 * 109.47125 * 52.20316 * 3 2 1 31 31 H 1.09010 * 109.46688 * 299.99757 * 4 2 1 32 32 H 1.08998 * 109.47671 * 59.99457 * 4 2 1 33 33 H 1.08994 * 109.47305 * 179.97438 * 4 2 1 34 34 H 0.96701 * 114.00087 * 300.00184 * 7 5 2 35 35 H 0.97002 * 119.99912 * 0.21081 * 10 8 5 36 36 H 1.08000 * 119.91184 * 0.02562 * 12 11 10 37 37 H 1.08004 * 120.08937 * 180.25428 * 13 12 11 38 38 H 0.97003 * 119.99907 * 180.02562 * 18 17 15 39 39 H 1.08004 * 120.08006 * 179.97438 * 23 14 13 40 40 H 1.08006 * 119.91212 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2491 6 1 3.1260 -0.6412 1.2970 7 8 1.6661 -2.0993 1.1896 8 6 1.4352 -0.0893 2.4763 9 8 0.5719 -0.6734 3.0963 10 7 1.8536 1.1250 2.8847 11 6 1.2980 1.7070 4.0211 12 6 0.8353 0.8985 5.0591 13 6 0.2951 1.4614 6.1776 14 6 0.1940 2.8629 6.2778 15 6 -0.3701 3.4528 7.4293 16 1 -0.8544 4.4157 7.3607 17 6 -0.3020 2.7902 8.6596 18 7 0.4858 1.7550 8.8025 19 14 -1.3354 3.3831 10.0983 20 1 -2.6503 2.6931 10.0810 21 1 -0.6333 3.0785 11.3709 22 1 -1.5442 4.8492 9.9868 23 6 0.6583 3.6727 5.2227 24 6 1.2022 3.0954 4.1133 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1210 1.4457 0.1395 29 1 1.7951 1.9145 -0.9514 30 1 1.5673 1.9950 0.8120 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2073 -2.1393 33 1 3.1299 -0.7208 -1.2496 34 1 0.7114 -2.2462 1.1451 35 1 2.5420 1.5935 2.3871 36 1 0.9095 -0.1760 4.9790 37 1 -0.0590 0.8342 6.9824 38 1 0.5328 1.2953 9.6554 39 1 0.5836 4.7479 5.2923 40 1 1.5589 3.7150 3.3037 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735842536.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:55 Heat of formation + Delta-G solvation = -96.783045 kcal Electronic energy + Delta-G solvation = -21767.762108 eV Core-core repulsion = 18545.946939 eV Total energy + Delta-G solvation = -3221.815169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.80347 -39.63012 -38.24757 -36.47672 -35.64814 -34.63189 -31.48570 -31.03830 -28.71328 -28.26788 -27.85218 -26.40787 -23.36029 -22.94443 -21.42786 -20.36546 -19.27839 -19.09392 -17.97833 -17.28892 -17.03618 -16.55113 -15.84208 -15.76186 -15.60543 -14.99109 -14.59972 -14.50759 -14.19330 -13.92355 -13.67064 -13.59053 -13.31076 -13.10816 -13.01187 -12.89859 -12.81163 -12.65404 -12.49471 -12.41426 -11.92808 -11.77011 -11.68515 -11.53252 -11.29301 -11.13604 -10.77278 -10.30303 -9.46343 -8.82135 -8.57373 -6.29534 0.78538 1.12577 1.37384 1.42949 1.51493 1.76046 2.20867 2.27610 2.76305 3.26641 3.57827 3.70059 3.75608 3.83310 4.05516 4.36895 4.43190 4.47229 4.48866 4.73700 4.78003 4.88321 4.96630 5.00700 5.04417 5.08493 5.10417 5.16939 5.28307 5.28735 5.36458 5.42361 5.48790 5.67744 5.83348 6.06811 6.10231 6.33001 6.45440 6.68175 6.71857 6.92790 6.99825 7.35118 8.35941 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038310 B = 0.003908 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.712269 B = 7163.478008 C = 7529.976087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.085 4.085 3 C -0.159 4.159 4 C -0.129 4.129 5 C 0.110 3.890 6 H 0.141 0.859 7 O -0.546 6.546 8 C 0.471 3.529 9 O -0.571 6.571 10 N -0.636 5.636 11 C 0.011 3.989 12 C -0.109 4.109 13 C -0.176 4.176 14 C 0.071 3.929 15 C -0.496 4.496 16 H 0.080 0.920 17 C 0.028 3.972 18 N -0.834 5.834 19 Si 0.986 3.014 20 H -0.266 1.266 21 H -0.269 1.269 22 H -0.254 1.254 23 C -0.219 4.219 24 C -0.102 4.102 25 H 0.029 0.971 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.385 0.615 35 H 0.417 0.583 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.286 0.714 39 H 0.111 0.889 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.300 -1.011 -17.104 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.086 4.086 3 C -0.217 4.217 4 C -0.186 4.186 5 C 0.047 3.953 6 H 0.158 0.842 7 O -0.353 6.353 8 C 0.260 3.740 9 O -0.451 6.451 10 N -0.283 5.283 11 C -0.083 4.083 12 C -0.129 4.129 13 C -0.196 4.196 14 C 0.068 3.932 15 C -0.525 4.525 16 H 0.098 0.902 17 C -0.185 4.185 18 N -0.460 5.460 19 Si 0.807 3.193 20 H -0.191 1.191 21 H -0.194 1.194 22 H -0.177 1.177 23 C -0.239 4.239 24 C -0.122 4.122 25 H 0.048 0.952 26 H 0.098 0.902 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.236 0.764 35 H 0.256 0.744 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.129 0.871 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.445 -1.709 -16.521 17.194 hybrid contribution -0.860 0.269 1.032 1.370 sum 3.585 -1.440 -15.489 15.964 Atomic orbital electron populations 1.21954 0.94801 1.02125 1.01866 1.21111 0.95932 0.97008 0.94515 1.22133 1.02379 0.93673 1.03486 1.21737 1.01729 1.00161 0.94973 1.22124 1.01086 0.82312 0.89800 0.84180 1.86519 1.30210 1.22459 1.96066 1.22340 0.82625 0.81560 0.87478 1.90675 1.33425 1.63033 1.57949 1.43175 1.40103 1.18944 1.26080 1.17335 1.10168 0.91889 0.88914 1.20647 1.00678 0.98450 0.93153 1.20934 1.05856 0.95578 0.97234 1.18014 0.90080 0.91901 0.93163 1.19828 1.33971 1.05539 0.93203 0.90180 1.26817 0.94656 0.93982 1.03064 1.69906 1.30691 1.18275 1.27172 0.85145 0.78310 0.79882 0.75995 1.19074 1.19352 1.17728 1.20859 1.07630 0.98546 0.96848 1.20378 1.01203 0.92133 0.98447 0.95205 0.90241 0.92220 0.89982 0.90060 0.93047 0.92382 0.90987 0.91342 0.76433 0.74423 0.88488 0.88622 0.90401 0.87063 0.84570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 7.94 71.98 0.57 -2.52 16 2 C -0.08 -1.47 0.63 -52.18 -0.03 -1.51 16 3 C -0.16 -2.32 7.23 71.98 0.52 -1.80 16 4 C -0.13 -1.70 8.27 71.98 0.60 -1.11 16 5 C 0.11 2.53 2.76 29.85 0.08 2.61 16 6 H 0.14 2.61 8.13 -2.39 -0.02 2.59 16 7 O -0.55 -13.97 12.16 -130.26 -1.58 -15.55 16 8 C 0.47 15.76 5.24 87.66 0.46 16.22 16 9 O -0.57 -24.89 13.55 15.68 0.21 -24.67 16 10 N -0.64 -20.80 4.22 -303.11 -1.28 -22.08 16 11 C 0.01 0.46 6.37 38.56 0.25 0.71 16 12 C -0.11 -5.69 8.62 22.13 0.19 -5.50 16 13 C -0.18 -10.02 8.61 22.48 0.19 -9.83 16 14 C 0.07 3.94 5.56 -21.27 -0.12 3.82 16 15 C -0.50 -27.30 9.05 23.39 0.21 -27.09 16 16 H 0.08 4.18 7.88 -2.91 -0.02 4.16 16 17 C 0.03 1.48 5.22 85.24 0.45 1.92 16 18 N -0.83 -45.82 10.85 21.82 0.24 -45.58 16 19 Si 0.99 39.48 29.58 68.60 2.03 41.51 16 20 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 21 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 22 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 23 C -0.22 -10.50 9.74 22.48 0.22 -10.28 16 24 C -0.10 -4.21 9.88 22.13 0.22 -4.00 16 25 H 0.03 0.82 7.07 -2.38 -0.02 0.80 16 26 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 1.18 6.89 -2.39 -0.02 1.16 16 28 H 0.08 0.86 8.12 -2.39 -0.02 0.84 16 29 H 0.08 0.96 8.13 -2.39 -0.02 0.94 16 30 H 0.05 0.96 6.08 -2.39 -0.01 0.94 16 31 H 0.06 0.85 7.55 -2.38 -0.02 0.84 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.39 9.13 7.20 -74.06 -0.53 8.59 16 35 H 0.42 9.97 6.90 -92.71 -0.64 9.33 16 36 H 0.10 5.23 5.99 -2.91 -0.02 5.22 16 37 H 0.10 5.82 6.19 -2.91 -0.02 5.80 16 38 H 0.29 14.28 8.30 -92.71 -0.77 13.51 16 39 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 40 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -69.58 321.76 3.31 -66.27 By element: Atomic # 1 Polarization: 38.57 SS G_CDS: -0.11 Total: 38.46 kcal Atomic # 6 Polarization: -42.16 SS G_CDS: 3.80 Total: -38.35 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: -1.04 Total: -67.66 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -1.37 Total: -40.23 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -69.58 3.31 -66.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735842536.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.508 kcal (2) G-P(sol) polarization free energy of solvation -69.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds