Wall clock time and date at job start Mon Mar 30 2020 01:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46413 * 2 1 4 4 C 1.52996 * 109.47390 * 240.00174 * 2 1 3 5 5 C 1.52998 * 109.47438 * 119.99601 * 2 1 3 6 6 H 1.08996 * 109.47017 * 295.66818 * 5 2 1 7 7 O 1.42899 * 109.46534 * 55.66256 * 5 2 1 8 8 C 1.50693 * 109.47250 * 175.65900 * 5 2 1 9 9 O 1.21280 * 120.00410 * 253.65792 * 8 5 2 10 10 N 1.34781 * 119.99923 * 73.66075 * 8 5 2 11 11 C 1.39235 * 120.00099 * 175.33602 * 10 8 5 12 12 C 1.39481 * 119.83003 * 36.43519 * 11 10 8 13 13 C 1.36380 * 120.16600 * 179.75449 * 12 11 10 14 14 C 1.40863 * 119.82854 * 0.51806 * 13 12 11 15 15 C 1.41153 * 120.16796 * 179.71664 * 14 13 12 16 16 H 1.07996 * 120.00460 * 207.77760 * 15 14 13 17 17 C 1.39908 * 119.99618 * 27.77956 * 15 14 13 18 18 N 1.30874 * 120.00229 * 11.76627 * 17 15 14 19 19 Si 1.86796 * 119.99980 * 191.75964 * 17 15 14 20 20 H 1.48499 * 109.47084 * 90.00292 * 19 17 15 21 21 H 1.48504 * 109.47244 * 209.99809 * 19 17 15 22 22 H 1.48496 * 109.47406 * 330.00415 * 19 17 15 23 23 C 1.40875 * 119.67413 * 359.73139 * 14 13 12 24 24 C 1.36376 * 119.82425 * 0.02562 * 23 14 13 25 25 H 1.09001 * 109.47647 * 299.99839 * 1 2 3 26 26 H 1.09000 * 109.47350 * 60.00666 * 1 2 3 27 27 H 1.09011 * 109.46644 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46706 * 186.53891 * 3 2 1 29 29 H 1.09002 * 109.47275 * 306.53713 * 3 2 1 30 30 H 1.09000 * 109.47064 * 66.54197 * 3 2 1 31 31 H 1.08995 * 109.46984 * 299.99738 * 4 2 1 32 32 H 1.09004 * 109.46868 * 59.99402 * 4 2 1 33 33 H 1.08994 * 109.47432 * 179.97438 * 4 2 1 34 34 H 0.96697 * 114.00495 * 60.00410 * 7 5 2 35 35 H 0.96998 * 119.99612 * 355.34081 * 10 8 5 36 36 H 1.07998 * 119.91469 * 0.02562 * 12 11 10 37 37 H 1.08002 * 120.08787 * 180.25039 * 13 12 11 38 38 H 0.97005 * 120.00268 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.08466 * 179.97438 * 23 14 13 40 40 H 1.08003 * 119.91265 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0401 -0.7211 1.2493 6 1 1.7415 -0.1644 2.1375 7 8 1.4823 -2.0358 1.3013 8 6 3.5432 -0.8149 1.1966 9 8 4.0765 -1.8770 0.9546 10 7 4.2950 0.2815 1.4185 11 6 5.6825 0.1762 1.4663 12 6 6.3405 -0.7128 0.6165 13 6 7.6998 -0.8178 0.6540 14 6 8.4383 -0.0335 1.5614 15 6 9.8449 -0.1408 1.6104 16 1 10.3712 0.0732 2.5289 17 6 10.5574 -0.5243 0.4691 18 7 9.9592 -0.5602 -0.6944 19 14 12.3625 -0.9849 0.6057 20 1 12.4832 -2.4417 0.8671 21 1 13.0561 -0.6508 -0.6642 22 1 12.9832 -0.2286 1.7227 23 6 7.7662 0.8584 2.4202 24 6 6.4070 0.9560 2.3676 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 3.1235 1.4449 -0.1170 29 1 1.5841 1.9891 -0.8257 30 1 1.7752 1.9215 0.9427 31 1 1.6768 -1.7488 -1.2492 32 1 1.6766 -0.2073 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 1.7073 -2.5889 0.5408 35 1 3.8693 1.1439 1.5451 36 1 5.7725 -1.3164 -0.0759 37 1 8.2083 -1.5037 -0.0074 38 1 10.4530 -0.8265 -1.4857 39 1 8.3259 1.4627 3.1188 40 1 5.8902 1.6390 3.0256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735842537.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:58 Heat of formation + Delta-G solvation = -78.561959 kcal Electronic energy + Delta-G solvation = -21775.286386 eV Core-core repulsion = 18554.261343 eV Total energy + Delta-G solvation = -3221.025044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.46379 -38.09118 -36.77430 -35.15444 -34.22806 -32.91283 -29.60461 -29.25551 -27.51761 -27.45296 -26.98317 -24.67270 -21.59890 -21.16932 -19.92466 -19.31222 -17.85362 -17.31895 -16.46193 -16.10034 -15.46329 -15.21695 -14.62568 -14.35890 -13.95580 -13.66343 -13.38685 -12.94873 -12.80509 -12.59738 -12.34806 -12.21886 -12.08049 -11.86566 -11.78410 -11.51033 -11.38791 -11.13333 -11.09390 -11.01669 -10.97624 -10.67903 -10.37327 -9.86901 -9.63609 -9.33946 -9.03922 -8.78734 -7.53686 -6.98893 -6.70715 -4.33057 2.53501 2.96975 3.07217 3.09878 3.11280 3.30387 3.65803 3.93918 4.28143 4.48465 4.60106 4.64685 4.81999 5.05534 5.25206 5.34738 5.46175 5.54657 5.62486 5.69344 5.73373 5.80669 5.86059 6.00361 6.12912 6.15526 6.20059 6.38358 6.77781 6.97628 7.03327 7.15044 7.27501 7.47771 7.59355 7.67364 7.94765 8.05158 8.18030 8.29983 8.62502 8.72270 8.88415 8.98913 10.21241 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035069 B = 0.003920 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.233905 B = 7141.908674 C = 7311.241746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.094 4.094 3 C -0.159 4.159 4 C -0.151 4.151 5 C 0.102 3.898 6 H 0.117 0.883 7 O -0.538 6.538 8 C 0.475 3.525 9 O -0.525 6.525 10 N -0.648 5.648 11 C -0.008 4.008 12 C -0.086 4.086 13 C -0.152 4.152 14 C 0.105 3.895 15 C -0.459 4.459 16 H 0.077 0.923 17 C 0.072 3.928 18 N -0.798 5.798 19 Si 0.912 3.088 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.213 4.213 24 C -0.106 4.106 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.381 0.619 35 H 0.395 0.605 36 H 0.104 0.896 37 H 0.123 0.877 38 H 0.280 0.720 39 H 0.096 0.904 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.121 3.152 -0.907 14.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.095 4.095 3 C -0.216 4.216 4 C -0.208 4.208 5 C 0.038 3.962 6 H 0.134 0.866 7 O -0.344 6.344 8 C 0.261 3.739 9 O -0.402 6.402 10 N -0.294 5.294 11 C -0.100 4.100 12 C -0.106 4.106 13 C -0.172 4.172 14 C 0.103 3.897 15 C -0.488 4.488 16 H 0.096 0.904 17 C -0.145 4.145 18 N -0.424 5.424 19 Si 0.736 3.264 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.233 4.233 24 C -0.126 4.126 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.231 0.769 35 H 0.230 0.770 36 H 0.122 0.878 37 H 0.140 0.860 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.958 2.542 -0.763 14.208 hybrid contribution 0.903 0.166 -0.455 1.024 sum -13.055 2.708 -1.218 13.389 Atomic orbital electron populations 1.21770 0.93159 1.02515 1.01648 1.21147 0.96981 0.96251 0.95118 1.22114 1.02483 0.94557 1.02467 1.21947 1.02055 1.00101 0.96675 1.21945 0.89400 0.85542 0.99264 0.86578 1.86528 1.74165 1.23728 1.49963 1.21375 0.89970 0.84485 0.78088 1.90697 1.73543 1.28533 1.47426 1.43258 1.06041 1.09688 1.70416 1.17229 0.80398 1.08259 1.04110 1.20515 0.94663 0.98054 0.97365 1.21069 0.91736 1.01573 1.02824 1.17688 0.93391 0.88402 0.90249 1.19563 0.91865 1.40238 0.97173 0.90449 1.25914 1.00971 0.92850 0.94727 1.69818 1.38353 1.34869 0.99320 0.86257 0.81699 0.79800 0.78616 1.19314 1.20309 1.18667 1.20587 0.92999 1.03605 1.06078 1.20062 0.94597 1.00550 0.97403 0.92520 0.92511 0.91839 0.91137 0.91634 0.92090 0.92353 0.91945 0.91752 0.76911 0.77005 0.87807 0.85970 0.90914 0.88602 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 8.28 37.16 0.31 -0.85 16 2 C -0.09 -0.97 0.63 -154.51 -0.10 -1.07 16 3 C -0.16 -1.51 7.21 37.16 0.27 -1.24 16 4 C -0.15 -1.69 7.94 37.16 0.30 -1.40 16 5 C 0.10 1.30 2.76 -27.89 -0.08 1.22 16 6 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 7 O -0.54 -7.31 12.20 -54.76 -0.67 -7.98 16 8 C 0.47 8.17 5.25 -10.99 -0.06 8.11 16 9 O -0.53 -11.24 13.77 -13.97 -0.19 -11.44 16 10 N -0.65 -11.19 4.31 -9.74 -0.04 -11.23 16 11 C -0.01 -0.17 6.29 -83.57 -0.53 -0.70 16 12 C -0.09 -2.13 8.61 -39.79 -0.34 -2.48 16 13 C -0.15 -4.08 8.61 -39.26 -0.34 -4.42 16 14 C 0.11 2.83 5.56 -106.80 -0.59 2.23 16 15 C -0.46 -12.20 9.05 -37.85 -0.34 -12.55 16 16 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 17 C 0.07 1.83 5.24 -17.33 -0.09 1.74 16 18 N -0.80 -20.80 10.82 55.55 0.60 -20.20 16 19 Si 0.91 18.83 29.58 -169.99 -5.03 13.80 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 23 C -0.21 -5.15 9.74 -39.26 -0.38 -5.53 16 24 C -0.11 -2.32 9.90 -39.79 -0.39 -2.71 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.57 7.58 -51.92 -0.39 0.18 16 28 H 0.07 0.81 5.97 -51.93 -0.31 0.50 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 31 H 0.06 0.61 6.87 -51.93 -0.36 0.25 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.91 7.08 -51.93 -0.37 0.54 16 34 H 0.38 4.65 7.15 45.56 0.33 4.97 16 35 H 0.39 5.39 6.73 -40.82 -0.27 5.12 16 36 H 0.10 2.57 6.30 -52.49 -0.33 2.24 16 37 H 0.12 3.41 6.17 -52.49 -0.32 3.09 16 38 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 39 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 40 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 322.04 15.07 4.85 4.85 Total: -1.00 -30.22 322.04 -7.81 -38.03 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -4.96 Total: 13.79 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -2.37 Total: -19.64 kcal Atomic # 7 Polarization: -31.98 SS G_CDS: 0.56 Total: -31.42 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.86 Total: -19.41 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.22 -7.81 -38.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735842537.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.533 kcal (2) G-P(sol) polarization free energy of solvation -30.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds