Wall clock time and date at job start Mon Mar 30 2020 01:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46413 * 2 1 4 4 C 1.52996 * 109.47390 * 240.00174 * 2 1 3 5 5 C 1.52998 * 109.47438 * 119.99601 * 2 1 3 6 6 H 1.08996 * 109.47017 * 295.66818 * 5 2 1 7 7 O 1.42899 * 109.46534 * 55.66256 * 5 2 1 8 8 C 1.50693 * 109.47250 * 175.65900 * 5 2 1 9 9 O 1.21280 * 120.00410 * 253.65792 * 8 5 2 10 10 N 1.34781 * 119.99923 * 73.66075 * 8 5 2 11 11 C 1.39235 * 120.00099 * 175.33602 * 10 8 5 12 12 C 1.39481 * 119.83003 * 36.43519 * 11 10 8 13 13 C 1.36380 * 120.16600 * 179.75449 * 12 11 10 14 14 C 1.40863 * 119.82854 * 0.51806 * 13 12 11 15 15 C 1.41153 * 120.16796 * 179.71664 * 14 13 12 16 16 H 1.07996 * 120.00460 * 207.77760 * 15 14 13 17 17 C 1.39908 * 119.99618 * 27.77956 * 15 14 13 18 18 N 1.30874 * 120.00229 * 11.76627 * 17 15 14 19 19 Si 1.86796 * 119.99980 * 191.75964 * 17 15 14 20 20 H 1.48499 * 109.47084 * 90.00292 * 19 17 15 21 21 H 1.48504 * 109.47244 * 209.99809 * 19 17 15 22 22 H 1.48496 * 109.47406 * 330.00415 * 19 17 15 23 23 C 1.40875 * 119.67413 * 359.73139 * 14 13 12 24 24 C 1.36376 * 119.82425 * 0.02562 * 23 14 13 25 25 H 1.09001 * 109.47647 * 299.99839 * 1 2 3 26 26 H 1.09000 * 109.47350 * 60.00666 * 1 2 3 27 27 H 1.09011 * 109.46644 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46706 * 186.53891 * 3 2 1 29 29 H 1.09002 * 109.47275 * 306.53713 * 3 2 1 30 30 H 1.09000 * 109.47064 * 66.54197 * 3 2 1 31 31 H 1.08995 * 109.46984 * 299.99738 * 4 2 1 32 32 H 1.09004 * 109.46868 * 59.99402 * 4 2 1 33 33 H 1.08994 * 109.47432 * 179.97438 * 4 2 1 34 34 H 0.96697 * 114.00495 * 60.00410 * 7 5 2 35 35 H 0.96998 * 119.99612 * 355.34081 * 10 8 5 36 36 H 1.07998 * 119.91469 * 0.02562 * 12 11 10 37 37 H 1.08002 * 120.08787 * 180.25039 * 13 12 11 38 38 H 0.97005 * 120.00268 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.08466 * 179.97438 * 23 14 13 40 40 H 1.08003 * 119.91265 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0401 -0.7211 1.2493 6 1 1.7415 -0.1644 2.1375 7 8 1.4823 -2.0358 1.3013 8 6 3.5432 -0.8149 1.1966 9 8 4.0765 -1.8770 0.9546 10 7 4.2950 0.2815 1.4185 11 6 5.6825 0.1762 1.4663 12 6 6.3405 -0.7128 0.6165 13 6 7.6998 -0.8178 0.6540 14 6 8.4383 -0.0335 1.5614 15 6 9.8449 -0.1408 1.6104 16 1 10.3712 0.0732 2.5289 17 6 10.5574 -0.5243 0.4691 18 7 9.9592 -0.5602 -0.6944 19 14 12.3625 -0.9849 0.6057 20 1 12.4832 -2.4417 0.8671 21 1 13.0561 -0.6508 -0.6642 22 1 12.9832 -0.2286 1.7227 23 6 7.7662 0.8584 2.4202 24 6 6.4070 0.9560 2.3676 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 3.1235 1.4449 -0.1170 29 1 1.5841 1.9891 -0.8257 30 1 1.7752 1.9215 0.9427 31 1 1.6768 -1.7488 -1.2492 32 1 1.6766 -0.2073 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 1.7073 -2.5889 0.5408 35 1 3.8693 1.1439 1.5451 36 1 5.7725 -1.3164 -0.0759 37 1 8.2083 -1.5037 -0.0074 38 1 10.4530 -0.8265 -1.4857 39 1 8.3259 1.4627 3.1188 40 1 5.8902 1.6390 3.0256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735842537.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:58 Heat of formation + Delta-G solvation = -97.514201 kcal Electronic energy + Delta-G solvation = -21776.108217 eV Core-core repulsion = 18554.261343 eV Total energy + Delta-G solvation = -3221.846875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.78890 -39.62905 -38.24406 -36.47369 -35.65586 -34.62870 -31.49303 -31.03610 -28.71483 -28.27904 -27.87103 -26.41319 -23.32283 -22.94484 -21.43669 -20.34995 -19.29769 -19.13302 -17.99478 -17.34628 -16.88051 -16.67184 -15.87264 -15.66426 -15.60190 -15.01667 -14.63557 -14.45575 -14.22863 -13.99540 -13.68612 -13.54678 -13.27827 -13.09184 -13.01933 -12.90082 -12.80638 -12.71903 -12.49506 -12.39312 -11.93104 -11.77776 -11.67775 -11.49280 -11.34143 -11.15456 -10.73880 -10.32907 -9.46746 -8.84928 -8.58015 -6.31126 0.79002 1.12543 1.37520 1.43327 1.51431 1.73623 2.20790 2.28772 2.75662 3.26758 3.57371 3.68612 3.73672 3.84939 4.04767 4.37082 4.41974 4.45990 4.47181 4.71171 4.76622 4.86619 4.95804 4.98519 5.03511 5.08904 5.09871 5.17283 5.26947 5.29726 5.34626 5.41812 5.47788 5.67032 5.85080 6.06756 6.10154 6.32393 6.44752 6.67247 6.71350 6.92278 6.99185 7.35620 8.35517 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035069 B = 0.003920 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.233905 B = 7141.908674 C = 7311.241746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.086 4.086 3 C -0.160 4.160 4 C -0.152 4.152 5 C 0.111 3.889 6 H 0.143 0.857 7 O -0.546 6.546 8 C 0.473 3.527 9 O -0.572 6.572 10 N -0.638 5.638 11 C 0.006 3.994 12 C -0.100 4.100 13 C -0.178 4.178 14 C 0.072 3.928 15 C -0.495 4.495 16 H 0.080 0.920 17 C 0.029 3.971 18 N -0.833 5.833 19 Si 0.986 3.014 20 H -0.266 1.266 21 H -0.268 1.268 22 H -0.254 1.254 23 C -0.220 4.220 24 C -0.101 4.101 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.027 0.973 34 H 0.385 0.615 35 H 0.416 0.584 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.286 0.714 39 H 0.111 0.889 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.975 4.699 0.054 16.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.087 4.087 3 C -0.218 4.218 4 C -0.209 4.209 5 C 0.048 3.952 6 H 0.161 0.839 7 O -0.352 6.352 8 C 0.261 3.739 9 O -0.452 6.452 10 N -0.286 5.286 11 C -0.087 4.087 12 C -0.120 4.120 13 C -0.198 4.198 14 C 0.070 3.930 15 C -0.525 4.525 16 H 0.098 0.902 17 C -0.185 4.185 18 N -0.460 5.460 19 Si 0.807 3.193 20 H -0.191 1.191 21 H -0.193 1.193 22 H -0.178 1.178 23 C -0.240 4.240 24 C -0.121 4.121 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.046 0.954 34 H 0.236 0.764 35 H 0.256 0.744 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.129 0.871 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.861 4.124 0.204 16.390 hybrid contribution 1.290 -0.312 -0.765 1.532 sum -14.570 3.812 -0.561 15.071 Atomic orbital electron populations 1.21736 0.91056 1.02714 1.03044 1.21122 0.98364 0.96241 0.92929 1.22141 1.00976 0.94137 1.04499 1.21962 0.99651 1.00988 0.98275 1.22120 0.85448 0.85887 1.01759 0.83920 1.86514 1.73821 1.24322 1.50521 1.22364 0.91999 0.83440 0.76081 1.90685 1.74897 1.30397 1.49179 1.43190 1.04055 1.11165 1.70233 1.17317 0.82795 1.06254 1.02345 1.20544 0.94087 0.99134 0.98212 1.20952 0.92656 1.02422 1.03739 1.18018 0.94117 0.89517 0.91350 1.19834 0.92318 1.42391 0.97955 0.90224 1.26808 1.05624 0.92106 0.93922 1.69900 1.40312 1.35642 1.00120 0.85142 0.75800 0.79336 0.79048 1.19083 1.19267 1.17800 1.20867 0.94321 1.03121 1.05729 1.20437 0.93912 1.00517 0.97264 0.91173 0.91099 0.92285 0.93449 0.90174 0.89676 0.91991 0.90366 0.95366 0.76449 0.74444 0.88804 0.88431 0.90373 0.87109 0.84721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 8.28 71.98 0.60 -1.13 16 2 C -0.09 -1.54 0.63 -52.18 -0.03 -1.57 16 3 C -0.16 -2.52 7.21 71.98 0.52 -2.00 16 4 C -0.15 -3.26 7.94 71.98 0.57 -2.68 16 5 C 0.11 2.55 2.76 29.85 0.08 2.63 16 6 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 7 O -0.55 -13.85 12.20 -130.31 -1.59 -15.44 16 8 C 0.47 15.85 5.25 87.65 0.46 16.31 16 9 O -0.57 -24.97 13.77 15.64 0.22 -24.75 16 10 N -0.64 -21.02 4.31 -303.12 -1.31 -22.33 16 11 C 0.01 0.28 6.29 38.56 0.24 0.52 16 12 C -0.10 -5.14 8.61 22.14 0.19 -4.95 16 13 C -0.18 -10.06 8.61 22.48 0.19 -9.86 16 14 C 0.07 4.02 5.56 -21.28 -0.12 3.91 16 15 C -0.50 -27.26 9.05 23.39 0.21 -27.05 16 16 H 0.08 4.16 7.87 -2.91 -0.02 4.14 16 17 C 0.03 1.50 5.24 85.24 0.45 1.95 16 18 N -0.83 -45.37 10.82 21.82 0.24 -45.13 16 19 Si 0.99 39.33 29.58 68.60 2.03 41.36 16 20 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 21 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 22 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 23 C -0.22 -10.65 9.74 22.48 0.22 -10.43 16 24 C -0.10 -4.27 9.90 22.13 0.22 -4.05 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.87 7.58 -2.38 -0.02 0.85 16 28 H 0.05 0.98 5.97 -2.39 -0.01 0.96 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 0.94 8.13 -2.39 -0.02 0.92 16 31 H 0.06 1.25 6.87 -2.39 -0.02 1.23 16 32 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.03 0.80 7.08 -2.39 -0.02 0.78 16 34 H 0.39 9.13 7.15 -74.06 -0.53 8.60 16 35 H 0.42 10.11 6.73 -92.71 -0.62 9.49 16 36 H 0.09 4.94 6.30 -2.91 -0.02 4.92 16 37 H 0.10 5.88 6.17 -2.91 -0.02 5.86 16 38 H 0.29 14.14 8.30 -92.70 -0.77 13.37 16 39 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 40 H 0.14 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -69.20 322.04 3.30 -65.90 By element: Atomic # 1 Polarization: 38.90 SS G_CDS: -0.09 Total: 38.81 kcal Atomic # 6 Polarization: -42.21 SS G_CDS: 3.80 Total: -38.41 kcal Atomic # 7 Polarization: -66.39 SS G_CDS: -1.07 Total: -67.46 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -1.37 Total: -40.20 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -69.20 3.30 -65.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735842537.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.609 kcal (2) G-P(sol) polarization free energy of solvation -69.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds