Wall clock time and date at job start Mon Mar 30 2020 02:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29415 * 120.00048 * 2 1 4 4 O 1.41605 * 119.99775 * 0.02562 * 3 2 1 5 5 C 1.42899 * 113.99771 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46990 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47175 * 175.00157 * 6 5 4 8 8 C 1.53002 * 109.47402 * 295.00026 * 6 5 4 9 9 C 1.47499 * 120.00395 * 179.97438 * 2 1 3 10 10 C 1.39744 * 120.08347 * 179.97438 * 9 2 1 11 11 C 1.37722 * 119.92142 * 180.02562 * 10 9 2 12 12 C 1.39081 * 120.07575 * 359.97438 * 11 10 9 13 13 O 1.35640 * 119.91482 * 180.02562 * 12 11 10 14 14 C 1.34807 * 117.00097 * 5.55002 * 13 12 11 15 15 H 1.07995 * 120.00485 * 354.94726 * 14 13 12 16 16 C 1.38669 * 119.99996 * 174.94639 * 14 13 12 17 17 N 1.31548 * 120.00349 * 180.02562 * 16 14 13 18 18 Si 1.86809 * 120.00071 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46943 * 90.00143 * 18 16 14 20 20 H 1.48495 * 109.47199 * 210.00227 * 18 16 14 21 21 H 1.48497 * 109.46740 * 330.00361 * 18 16 14 22 22 C 1.39069 * 120.16263 * 0.27350 * 12 11 10 23 23 C 1.37722 * 120.08162 * 359.45230 * 22 12 11 24 24 H 1.09003 * 109.47103 * 269.99613 * 1 2 3 25 25 H 1.08992 * 109.47206 * 29.99887 * 1 2 3 26 26 H 1.08997 * 109.46737 * 150.00005 * 1 2 3 27 27 H 1.08997 * 109.47243 * 299.99714 * 5 4 3 28 28 H 1.09002 * 109.47163 * 59.99898 * 5 4 3 29 29 H 1.08997 * 109.46820 * 55.00031 * 6 5 4 30 30 H 1.09002 * 109.47306 * 59.99713 * 7 6 5 31 31 H 1.09004 * 109.47348 * 180.02562 * 7 6 5 32 32 H 1.09008 * 109.47033 * 299.99931 * 7 6 5 33 33 H 1.08994 * 109.46898 * 180.02562 * 8 6 5 34 34 H 1.09002 * 109.46762 * 300.00093 * 8 6 5 35 35 H 1.09000 * 109.46593 * 59.99890 * 8 6 5 36 36 H 1.08005 * 120.03715 * 0.02562 * 10 9 2 37 37 H 1.07993 * 119.96138 * 179.97438 * 11 10 9 38 38 H 0.96997 * 119.99684 * 179.97438 * 17 16 14 39 39 H 1.08003 * 119.96045 * 179.70207 * 22 12 11 40 40 H 1.08007 * 120.04237 * 180.24978 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1541 1.1208 0.0000 4 8 1.4460 2.3471 0.0005 5 6 2.2860 3.5031 0.0011 6 6 1.4187 4.7636 0.0010 7 6 2.3134 5.9983 0.1272 8 6 0.6278 4.8385 -1.3066 9 6 2.2446 -1.2773 0.0006 10 6 3.6420 -1.2793 0.0000 11 6 4.3273 -2.4739 0.0000 12 6 3.6302 -3.6774 0.0011 13 8 4.3084 -4.8520 0.0016 14 6 5.6498 -4.7841 0.1172 15 1 6.1436 -3.8237 0.1219 16 6 6.3957 -5.9476 0.2302 17 7 7.7047 -5.8815 0.3436 18 14 5.5417 -7.6091 0.2230 19 1 5.4379 -8.1062 -1.1725 20 1 6.3273 -8.5730 1.0347 21 1 4.1811 -7.4687 0.8010 22 6 2.2395 -3.6793 -0.0036 23 6 1.5475 -2.4886 0.0021 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 2.9152 3.4947 0.8910 28 1 2.9152 3.4955 -0.8889 29 1 0.7269 4.7286 0.8425 30 1 3.0053 6.0333 -0.7143 31 1 1.6956 6.8963 0.1276 32 1 2.8769 5.9450 1.0589 33 1 0.0104 5.7367 -1.3068 34 1 1.3197 4.8734 -2.1482 35 1 -0.0096 3.9589 -1.3965 36 1 4.1839 -0.3450 -0.0004 37 1 5.4072 -2.4761 -0.0008 38 1 8.2263 -6.6954 0.4230 39 1 1.7015 -4.6158 -0.0076 40 1 0.4674 -2.4909 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749625837.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:47 Heat of formation + Delta-G solvation = -7.250030 kcal Electronic energy + Delta-G solvation = -20331.664450 eV Core-core repulsion = 17113.731724 eV Total energy + Delta-G solvation = -3217.932727 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.35264 -38.00154 -37.15117 -35.55848 -33.61864 -32.47616 -30.58236 -29.00919 -27.99111 -27.38634 -25.96705 -25.25651 -22.19974 -21.89310 -20.42501 -19.33149 -17.95458 -17.36517 -16.38879 -16.10105 -15.53053 -14.92856 -14.42816 -14.29224 -14.12959 -14.03467 -13.87495 -13.65945 -13.24026 -12.92023 -12.78985 -12.49294 -12.41255 -12.38136 -12.00364 -11.72112 -11.47443 -11.38832 -11.15000 -11.02034 -10.98234 -10.76900 -10.70826 -10.24140 -9.65821 -9.40850 -9.37154 -8.88974 -8.39985 -7.32304 -6.54515 -4.19708 1.41478 2.07929 2.86241 2.92356 3.17073 3.18933 3.32496 4.13363 4.45208 4.64511 4.66730 4.70150 4.81321 4.84511 4.99921 5.24572 5.33760 5.36379 5.40238 5.44012 5.55620 5.59300 5.61758 5.63230 5.73729 5.75838 5.82496 5.97621 6.03447 6.09176 6.10355 6.22433 6.37710 6.57815 6.71979 6.96833 7.07997 7.18586 7.45715 7.68042 7.89205 7.91023 8.79183 9.39226 10.52065 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035165 B = 0.002952 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.063052 B = 9481.264150 C =10169.582251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.200 3.800 3 N -0.365 5.365 4 O -0.249 6.249 5 C 0.082 3.918 6 C -0.094 4.094 7 C -0.144 4.144 8 C -0.145 4.145 9 C -0.158 4.158 10 C -0.025 4.025 11 C -0.231 4.231 12 C 0.175 3.825 13 O -0.206 6.206 14 C -0.391 4.391 15 H 0.110 0.890 16 C 0.065 3.935 17 N -0.870 5.870 18 Si 0.907 3.093 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.258 1.258 22 C -0.197 4.197 23 C -0.042 4.042 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.120 0.880 37 H 0.137 0.863 38 H 0.282 0.718 39 H 0.123 0.877 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.946 15.095 -0.865 19.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.013 3.987 3 N -0.115 5.115 4 O -0.261 6.261 5 C 0.005 3.995 6 C -0.114 4.114 7 C -0.202 4.202 8 C -0.202 4.202 9 C -0.161 4.161 10 C -0.045 4.045 11 C -0.250 4.250 12 C 0.120 3.880 13 O -0.109 6.109 14 C -0.466 4.466 15 H 0.128 0.872 16 C -0.139 4.139 17 N -0.507 5.507 18 Si 0.732 3.268 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.182 1.182 22 C -0.217 4.217 23 C -0.063 4.063 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.138 0.862 37 H 0.155 0.845 38 H 0.092 0.908 39 H 0.141 0.859 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.150 15.244 -0.859 19.513 hybrid contribution -0.616 -0.721 0.018 0.948 sum -12.766 14.523 -0.841 19.355 Atomic orbital electron populations 1.21269 0.92457 1.03580 1.03281 1.23205 0.93877 0.91012 0.90562 1.76898 1.23531 0.91124 1.19949 1.89699 1.31192 1.11161 1.94067 1.22377 0.93161 0.83052 1.00886 1.21132 0.97693 0.93095 0.99451 1.21769 0.99588 0.96663 1.02151 1.21800 1.00064 1.01764 0.96567 1.17771 0.92758 0.88985 1.16594 1.20987 0.92720 0.97480 0.93339 1.21240 1.01346 0.91523 1.10891 1.19321 0.91269 0.85702 0.91684 1.83527 1.21991 1.26992 1.78346 1.20855 0.77060 0.97166 1.51543 0.87249 1.24525 0.94842 0.99330 0.95243 1.69638 1.04568 1.30429 1.46042 0.86160 0.80317 0.81455 0.78903 1.19700 1.20633 1.18183 1.20099 0.91221 0.98143 1.12211 1.20725 0.98647 0.90562 0.96321 0.90254 0.90818 0.90370 0.92994 0.92964 0.90533 0.92345 0.92024 0.92372 0.92804 0.92739 0.92117 0.86161 0.84519 0.90763 0.85914 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.27 36.00 0.33 -1.46 16 2 C 0.20 3.15 7.11 -79.84 -0.57 2.58 16 3 N -0.36 -6.11 10.46 35.07 0.37 -5.74 16 4 O -0.25 -3.74 9.68 -11.47 -0.11 -3.85 16 5 C 0.08 1.01 5.78 37.16 0.21 1.22 16 6 C -0.09 -0.88 3.16 -90.62 -0.29 -1.17 16 7 C -0.14 -1.08 9.19 37.16 0.34 -0.74 16 8 C -0.14 -1.30 9.09 37.16 0.34 -0.96 16 9 C -0.16 -2.72 5.87 -105.00 -0.62 -3.34 16 10 C -0.03 -0.48 9.57 -39.21 -0.38 -0.85 16 11 C -0.23 -4.87 9.15 -39.46 -0.36 -5.24 16 12 C 0.17 3.86 6.65 -38.96 -0.26 3.60 16 13 O -0.21 -5.19 8.58 0.46 0.00 -5.18 16 14 C -0.39 -10.62 9.94 30.89 0.31 -10.31 16 15 H 0.11 3.04 5.42 -52.49 -0.28 2.75 16 16 C 0.07 1.77 5.49 -17.51 -0.10 1.68 16 17 N -0.87 -24.38 13.96 55.48 0.77 -23.60 16 18 Si 0.91 20.82 28.62 -169.99 -4.86 15.95 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.26 -5.91 7.11 56.52 0.40 -5.51 16 22 C -0.20 -3.65 9.97 -39.46 -0.39 -4.04 16 23 C -0.04 -0.68 9.35 -39.20 -0.37 -1.04 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 0.89 7.35 -51.93 -0.38 0.51 16 26 H 0.08 0.81 6.47 -51.93 -0.34 0.48 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.61 7.82 -51.93 -0.41 0.21 16 36 H 0.12 2.16 7.55 -52.48 -0.40 1.76 16 37 H 0.14 3.02 5.62 -52.49 -0.29 2.73 16 38 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.12 2.06 8.06 -52.48 -0.42 1.63 16 40 H 0.12 1.51 6.35 -52.48 -0.33 1.18 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -28.75 338.45 -6.31 -35.06 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.80 Total: 2.33 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -1.79 Total: -20.07 kcal Atomic # 7 Polarization: -30.49 SS G_CDS: 1.14 Total: -29.34 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.11 Total: -9.03 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.86 Total: 15.95 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.75 -6.31 -35.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749625837.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.810 kcal (2) G-P(sol) polarization free energy of solvation -28.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds