Wall clock time and date at job start Mon Mar 30 2020 02:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29415 * 120.00048 * 2 1 4 4 O 1.41605 * 119.99775 * 0.02562 * 3 2 1 5 5 C 1.42899 * 113.99771 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46990 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47175 * 175.00157 * 6 5 4 8 8 C 1.53002 * 109.47402 * 295.00026 * 6 5 4 9 9 C 1.47499 * 120.00395 * 179.97438 * 2 1 3 10 10 C 1.39744 * 120.08347 * 179.97438 * 9 2 1 11 11 C 1.37722 * 119.92142 * 180.02562 * 10 9 2 12 12 C 1.39081 * 120.07575 * 359.97438 * 11 10 9 13 13 O 1.35640 * 119.91482 * 180.02562 * 12 11 10 14 14 C 1.34807 * 117.00097 * 5.55002 * 13 12 11 15 15 H 1.07995 * 120.00485 * 354.94726 * 14 13 12 16 16 C 1.38669 * 119.99996 * 174.94639 * 14 13 12 17 17 N 1.31548 * 120.00349 * 180.02562 * 16 14 13 18 18 Si 1.86809 * 120.00071 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46943 * 90.00143 * 18 16 14 20 20 H 1.48495 * 109.47199 * 210.00227 * 18 16 14 21 21 H 1.48497 * 109.46740 * 330.00361 * 18 16 14 22 22 C 1.39069 * 120.16263 * 0.27350 * 12 11 10 23 23 C 1.37722 * 120.08162 * 359.45230 * 22 12 11 24 24 H 1.09003 * 109.47103 * 269.99613 * 1 2 3 25 25 H 1.08992 * 109.47206 * 29.99887 * 1 2 3 26 26 H 1.08997 * 109.46737 * 150.00005 * 1 2 3 27 27 H 1.08997 * 109.47243 * 299.99714 * 5 4 3 28 28 H 1.09002 * 109.47163 * 59.99898 * 5 4 3 29 29 H 1.08997 * 109.46820 * 55.00031 * 6 5 4 30 30 H 1.09002 * 109.47306 * 59.99713 * 7 6 5 31 31 H 1.09004 * 109.47348 * 180.02562 * 7 6 5 32 32 H 1.09008 * 109.47033 * 299.99931 * 7 6 5 33 33 H 1.08994 * 109.46898 * 180.02562 * 8 6 5 34 34 H 1.09002 * 109.46762 * 300.00093 * 8 6 5 35 35 H 1.09000 * 109.46593 * 59.99890 * 8 6 5 36 36 H 1.08005 * 120.03715 * 0.02562 * 10 9 2 37 37 H 1.07993 * 119.96138 * 179.97438 * 11 10 9 38 38 H 0.96997 * 119.99684 * 179.97438 * 17 16 14 39 39 H 1.08003 * 119.96045 * 179.70207 * 22 12 11 40 40 H 1.08007 * 120.04237 * 180.24978 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1541 1.1208 0.0000 4 8 1.4460 2.3471 0.0005 5 6 2.2860 3.5031 0.0011 6 6 1.4187 4.7636 0.0010 7 6 2.3134 5.9983 0.1272 8 6 0.6278 4.8385 -1.3066 9 6 2.2446 -1.2773 0.0006 10 6 3.6420 -1.2793 0.0000 11 6 4.3273 -2.4739 0.0000 12 6 3.6302 -3.6774 0.0011 13 8 4.3084 -4.8520 0.0016 14 6 5.6498 -4.7841 0.1172 15 1 6.1436 -3.8237 0.1219 16 6 6.3957 -5.9476 0.2302 17 7 7.7047 -5.8815 0.3436 18 14 5.5417 -7.6091 0.2230 19 1 5.4379 -8.1062 -1.1725 20 1 6.3273 -8.5730 1.0347 21 1 4.1811 -7.4687 0.8010 22 6 2.2395 -3.6793 -0.0036 23 6 1.5475 -2.4886 0.0021 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 2.9152 3.4947 0.8910 28 1 2.9152 3.4955 -0.8889 29 1 0.7269 4.7286 0.8425 30 1 3.0053 6.0333 -0.7143 31 1 1.6956 6.8963 0.1276 32 1 2.8769 5.9450 1.0589 33 1 0.0104 5.7367 -1.3068 34 1 1.3197 4.8734 -2.1482 35 1 -0.0096 3.9589 -1.3965 36 1 4.1839 -0.3450 -0.0004 37 1 5.4072 -2.4761 -0.0008 38 1 8.2263 -6.6954 0.4230 39 1 1.7015 -4.6158 -0.0076 40 1 0.4674 -2.4909 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749625837.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:47 Heat of formation + Delta-G solvation = -22.567566 kcal Electronic energy + Delta-G solvation = -20332.328669 eV Core-core repulsion = 17113.731724 eV Total energy + Delta-G solvation = -3218.596945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.99138 -39.26619 -38.50217 -36.68021 -34.83335 -34.36386 -32.09478 -30.49562 -29.12094 -28.05426 -27.46945 -26.62216 -23.71156 -23.46121 -21.23804 -20.73490 -19.73425 -19.13438 -17.64159 -17.17548 -16.73120 -16.49208 -15.83676 -15.68497 -15.62347 -15.48379 -15.18306 -14.62160 -14.43453 -14.31884 -14.18414 -14.02918 -13.63204 -13.20839 -13.14312 -13.01390 -12.68504 -12.66081 -12.45206 -12.37772 -12.04448 -11.94201 -11.80235 -11.65610 -11.36839 -10.99258 -10.72847 -10.48139 -9.91232 -8.93012 -8.52815 -6.25941 -0.01442 0.54072 1.33981 1.34934 1.51546 1.54280 1.77944 2.27473 2.77449 2.98332 3.14172 3.59623 3.84911 3.91554 3.98688 4.05255 4.14337 4.25542 4.45521 4.47341 4.54815 4.60030 4.68772 4.72104 4.75489 4.78216 4.88213 4.96444 4.99284 5.07339 5.16993 5.19031 5.26143 5.35461 5.38091 5.43009 5.59242 5.67426 5.73651 5.82143 6.12161 6.68516 6.80164 7.50078 8.58192 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035165 B = 0.002952 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.063052 B = 9481.264150 C =10169.582251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.192 3.808 3 N -0.388 5.388 4 O -0.247 6.247 5 C 0.076 3.924 6 C -0.088 4.088 7 C -0.141 4.141 8 C -0.143 4.143 9 C -0.140 4.140 10 C -0.035 4.035 11 C -0.244 4.244 12 C 0.143 3.857 13 O -0.231 6.231 14 C -0.404 4.404 15 H 0.082 0.918 16 C 0.012 3.988 17 N -0.920 5.920 18 Si 0.973 3.027 19 H -0.265 1.265 20 H -0.269 1.269 21 H -0.256 1.256 22 C -0.189 4.189 23 C -0.024 4.024 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.103 0.897 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.286 0.714 39 H 0.147 0.853 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.862 16.163 -0.912 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.005 3.995 3 N -0.137 5.137 4 O -0.262 6.262 5 C -0.001 4.001 6 C -0.108 4.108 7 C -0.199 4.199 8 C -0.200 4.200 9 C -0.142 4.142 10 C -0.055 4.055 11 C -0.264 4.264 12 C 0.092 3.908 13 O -0.137 6.137 14 C -0.480 4.480 15 H 0.099 0.901 16 C -0.188 4.188 17 N -0.559 5.559 18 Si 0.795 3.205 19 H -0.189 1.189 20 H -0.194 1.194 21 H -0.180 1.180 22 C -0.208 4.208 23 C -0.044 4.044 24 H 0.114 0.886 25 H 0.092 0.908 26 H 0.121 0.879 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.140 0.860 37 H 0.129 0.871 38 H 0.096 0.904 39 H 0.165 0.835 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -16.093 16.353 -0.910 22.961 hybrid contribution 0.377 -0.593 0.021 0.703 sum -15.716 15.759 -0.889 22.274 Atomic orbital electron populations 1.21329 0.89181 1.04904 1.04664 1.23337 0.95912 0.89895 0.90361 1.76808 1.25166 0.92340 1.19411 1.89700 1.31572 1.10954 1.93935 1.22641 0.93745 0.83298 1.00428 1.21150 0.97617 0.92215 0.99823 1.21766 0.99559 0.96256 1.02297 1.21787 0.99982 1.02063 0.96166 1.18127 0.92011 0.90773 1.13327 1.21061 0.94029 0.96574 0.93834 1.21179 1.00456 0.92702 1.12020 1.19885 0.92898 0.85129 0.92916 1.83483 1.20555 1.28184 1.81461 1.20737 0.78432 0.96456 1.52355 0.90093 1.25357 0.95441 1.02935 0.95034 1.69728 1.05956 1.31533 1.48715 0.85181 0.79133 0.76969 0.79262 1.18934 1.19398 1.18012 1.20508 0.89513 1.00339 1.10445 1.21229 1.01040 0.88652 0.93472 0.88648 0.90752 0.87857 0.93417 0.93484 0.90366 0.92252 0.90337 0.92237 0.90933 0.92872 0.93423 0.85973 0.87086 0.90390 0.83514 0.80740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.27 71.24 0.66 -2.14 16 2 C 0.19 5.45 7.11 45.36 0.32 5.77 16 3 N -0.39 -12.33 10.46 -42.96 -0.45 -12.78 16 4 O -0.25 -6.98 9.68 -38.80 -0.38 -7.36 16 5 C 0.08 1.76 5.78 71.98 0.42 2.18 16 6 C -0.09 -1.48 3.16 -10.79 -0.03 -1.52 16 7 C -0.14 -1.80 9.19 71.98 0.66 -1.14 16 8 C -0.14 -2.25 9.09 71.98 0.65 -1.59 16 9 C -0.14 -4.46 5.87 -20.11 -0.12 -4.57 16 10 C -0.04 -1.32 9.57 22.51 0.22 -1.11 16 11 C -0.24 -10.80 9.15 22.35 0.20 -10.59 16 12 C 0.14 6.39 6.65 22.67 0.15 6.54 16 13 O -0.23 -12.02 8.58 -21.29 -0.18 -12.20 16 14 C -0.40 -23.26 9.94 67.92 0.68 -22.59 16 15 H 0.08 4.94 5.42 -2.91 -0.02 4.93 16 16 C 0.01 0.66 5.49 84.84 0.47 1.12 16 17 N -0.92 -54.18 13.96 21.62 0.30 -53.88 16 18 Si 0.97 43.84 28.62 68.60 1.96 45.80 16 19 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 22 C -0.19 -6.51 9.97 22.35 0.22 -6.28 16 23 C -0.02 -0.68 9.35 22.51 0.21 -0.47 16 24 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.07 1.50 7.35 -2.39 -0.02 1.49 16 26 H 0.10 1.51 6.47 -2.39 -0.02 1.49 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 0.87 7.82 -2.39 -0.02 0.85 16 36 H 0.12 4.49 7.55 -2.91 -0.02 4.47 16 37 H 0.11 5.42 5.62 -2.91 -0.02 5.41 16 38 H 0.29 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.15 4.37 8.06 -2.91 -0.02 4.35 16 40 H 0.18 3.09 6.35 -2.91 -0.02 3.08 16 Total: -1.00 -66.12 338.45 6.99 -59.13 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 1.03 Total: 17.66 kcal Atomic # 6 Polarization: -41.09 SS G_CDS: 4.71 Total: -36.38 kcal Atomic # 7 Polarization: -66.51 SS G_CDS: -0.15 Total: -66.65 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.56 Total: -19.56 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.96 Total: 45.80 kcal Total: -66.12 6.99 -59.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749625837.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.562 kcal (2) G-P(sol) polarization free energy of solvation -66.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds