Wall clock time and date at job start Mon Mar 30 2020 01:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.50703 * 119.99920 * 2 1 4 4 C 1.32990 * 120.00361 * 180.02562 * 2 1 3 5 5 C 1.50702 * 120.00138 * 185.21675 * 4 2 1 6 6 C 1.47096 * 120.00072 * 5.21841 * 4 2 1 7 7 O 1.21621 * 120.00317 * 255.21831 * 6 4 2 8 8 N 1.34777 * 120.00177 * 75.21959 * 6 4 2 9 9 C 1.46503 * 120.00055 * 185.45751 * 8 6 4 10 10 C 1.50705 * 109.46826 * 269.99534 * 9 8 6 11 11 H 1.08001 * 119.99843 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00195 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99629 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00262 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46872 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47449 * 119.99566 * 14 12 10 17 17 H 1.48498 * 109.47035 * 239.99795 * 14 12 10 18 18 C 1.46500 * 119.99837 * 5.44851 * 8 6 4 19 19 C 1.50700 * 109.46900 * 85.40114 * 18 8 6 20 20 C 1.34510 * 125.78704 * 94.94372 * 19 18 8 21 21 C 1.41388 * 106.84185 * 180.02562 * 20 19 18 22 22 C 1.34512 * 106.83681 * 359.97438 * 21 20 19 23 23 O 1.34300 * 125.79203 * 274.63507 * 19 18 8 24 24 H 1.09008 * 109.46850 * 185.07023 * 1 2 3 25 25 H 1.08998 * 109.47501 * 305.06116 * 1 2 3 26 26 H 1.08992 * 109.47461 * 65.06693 * 1 2 3 27 27 H 1.08993 * 109.47494 * 274.88660 * 3 2 1 28 28 H 1.09005 * 109.47000 * 34.88386 * 3 2 1 29 29 H 1.08998 * 109.46956 * 154.88091 * 3 2 1 30 30 H 1.09002 * 109.47560 * 185.01259 * 5 4 2 31 31 H 1.08999 * 109.47247 * 305.00909 * 5 4 2 32 32 H 1.08998 * 109.47103 * 65.01360 * 5 4 2 33 33 H 1.08997 * 109.47434 * 29.99584 * 9 8 6 34 34 H 1.09005 * 109.47255 * 149.99623 * 9 8 6 35 35 H 0.97003 * 119.99967 * 180.02562 * 13 12 10 36 36 H 1.08999 * 109.47373 * 205.40222 * 18 8 6 37 37 H 1.09003 * 109.47127 * 325.39950 * 18 8 6 38 38 H 1.08005 * 126.58336 * 0.03475 * 20 19 18 39 39 H 1.07998 * 126.57949 * 179.97438 * 21 20 19 40 40 H 1.08003 * 125.78877 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 3.6743 -1.1544 0.1181 6 6 1.4411 -2.4229 -0.1169 7 8 1.2910 -3.1299 0.8612 8 7 0.9379 -2.8043 -1.3076 9 6 0.1088 -4.0086 -1.4006 10 6 0.9866 -5.2029 -1.6734 11 1 2.0551 -5.0773 -1.7685 12 6 0.4256 -6.4557 -1.8027 13 7 -0.8756 -6.6085 -1.6874 14 14 1.5137 -7.9361 -2.1402 15 1 2.9306 -7.4998 -2.2247 16 1 1.3636 -8.9219 -1.0399 17 1 1.1118 -8.5631 -3.4249 18 6 1.2197 -2.0145 -2.5089 19 6 2.5365 -2.4497 -3.0986 20 6 2.6976 -3.3528 -4.0824 21 6 4.0875 -3.4550 -4.3209 22 6 4.6924 -2.6079 -3.4690 23 8 3.7477 -1.9975 -2.7351 24 1 -0.3633 -1.0237 0.0908 25 1 -0.3634 0.5903 0.8411 26 1 -0.3634 0.4332 -0.9318 27 1 2.3663 1.6636 -1.0238 28 1 1.7120 2.0413 0.5878 29 1 3.2479 1.1545 0.4362 30 1 4.0455 -2.1736 0.0103 31 1 4.1017 -0.5274 -0.6644 32 1 3.9624 -0.7642 1.0943 33 1 -0.4240 -4.1564 -0.4613 34 1 -0.6101 -3.8932 -2.2118 35 1 -1.2703 -7.4900 -1.7780 36 1 0.4257 -2.1685 -3.2396 37 1 1.2710 -0.9581 -2.2453 38 1 1.9155 -3.8955 -4.5924 39 1 4.5707 -4.0912 -5.0477 40 1 5.7569 -2.4430 -3.3916 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751193935.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:21 Heat of formation + Delta-G solvation = -8.611746 kcal Electronic energy + Delta-G solvation = -22658.188950 eV Core-core repulsion = 19440.197175 eV Total energy + Delta-G solvation = -3217.991775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.07784 -39.37955 -35.93240 -35.10319 -32.65176 -32.45309 -30.26626 -29.97368 -28.27439 -27.08924 -25.38859 -24.48158 -22.79836 -21.25511 -20.42656 -19.66567 -17.60579 -16.86803 -16.39487 -15.79459 -15.49307 -15.16441 -14.87872 -14.46565 -14.12639 -13.85577 -13.42774 -12.95991 -12.72151 -12.46147 -12.31848 -12.28474 -12.21482 -12.16507 -12.03915 -11.89170 -11.41356 -11.33859 -11.22870 -11.06776 -10.86133 -10.61824 -10.18208 -9.63424 -9.38656 -9.00116 -8.42096 -8.35425 -8.07228 -7.71947 -6.01408 -4.03646 2.01802 2.14424 3.05734 3.28695 3.31526 3.39508 3.45167 3.61363 4.07467 4.48881 4.95480 5.04208 5.10780 5.24365 5.34228 5.38100 5.48549 5.49193 5.57815 5.68759 5.74616 5.78276 5.83828 5.92116 5.94781 6.00932 6.13160 6.24350 6.27738 6.44161 6.52289 6.64792 6.94805 6.97015 7.04368 7.40085 7.49562 7.62705 7.96179 8.26000 8.33487 8.93273 9.08209 9.60853 11.07183 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.007539 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.053206 B = 3713.264899 C = 4720.903956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.116 4.116 3 C -0.114 4.114 4 C -0.148 4.148 5 C -0.095 4.095 6 C 0.553 3.447 7 O -0.532 6.532 8 N -0.590 5.590 9 C 0.245 3.755 10 C -0.514 4.514 11 H 0.059 0.941 12 C 0.061 3.939 13 N -0.898 5.898 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.195 3.805 19 C -0.020 4.020 20 C -0.180 4.180 21 C -0.213 4.213 22 C -0.056 4.056 23 O -0.172 6.172 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.034 0.966 35 H 0.261 0.739 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.148 0.852 39 H 0.140 0.860 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.158 15.077 -3.637 17.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.117 4.117 3 C -0.170 4.170 4 C -0.151 4.151 5 C -0.152 4.152 6 C 0.340 3.660 7 O -0.409 6.409 8 N -0.321 5.321 9 C 0.126 3.874 10 C -0.552 4.552 11 H 0.077 0.923 12 C -0.141 4.141 13 N -0.537 5.537 14 Si 0.721 3.279 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C 0.071 3.929 19 C -0.072 4.072 20 C -0.200 4.200 21 C -0.233 4.233 22 C -0.124 4.124 23 O -0.068 6.068 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.124 0.876 37 H 0.101 0.899 38 H 0.166 0.834 39 H 0.158 0.842 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 6.940 14.749 -2.884 16.553 hybrid contribution 0.721 -1.373 -0.490 1.626 sum 7.662 13.376 -3.374 15.780 Atomic orbital electron populations 1.20917 0.91879 1.03292 1.01875 1.21909 0.95707 0.93990 1.00096 1.20801 0.99885 0.94302 1.02024 1.21517 0.96897 0.93004 1.03666 1.20565 0.90554 1.02891 1.01178 1.18315 0.78709 0.85364 0.83573 1.90790 1.58132 1.54642 1.37351 1.48327 1.50715 1.28065 1.05036 1.19379 0.89580 0.79999 0.98406 1.21445 0.94088 0.91797 1.47917 0.92253 1.24893 0.94961 0.98739 0.95466 1.69938 1.09847 1.23362 1.50587 0.86505 0.80902 0.82779 0.77694 1.19809 1.20989 1.21041 1.19835 0.89054 0.95475 0.88558 1.22960 0.85786 1.00122 0.98295 1.21591 0.96630 1.00749 1.01025 1.21787 0.94483 1.03385 1.03626 1.23828 0.93906 0.98942 0.95766 1.84000 1.14926 1.55160 1.52716 0.91380 0.91421 0.91399 0.91175 0.91980 0.91489 0.92009 0.91071 0.91582 0.93816 0.94825 0.92897 0.87583 0.89889 0.83437 0.84170 0.78928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 9.63 36.00 0.35 -1.30 16 2 C -0.12 -1.60 4.95 -101.17 -0.50 -2.10 16 3 C -0.11 -1.16 9.60 36.01 0.35 -0.81 16 4 C -0.15 -2.50 4.47 -102.85 -0.46 -2.96 16 5 C -0.09 -1.41 7.55 36.01 0.27 -1.14 16 6 C 0.55 12.10 5.01 -12.67 -0.06 12.04 16 7 O -0.53 -14.23 16.74 5.26 0.09 -14.14 16 8 N -0.59 -12.58 2.37 -177.83 -0.42 -13.01 16 9 C 0.25 6.32 5.16 -5.19 -0.03 6.29 16 10 C -0.51 -14.54 9.39 -34.44 -0.32 -14.86 16 11 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 13 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 14 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 15 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 C 0.20 3.31 5.80 -5.19 -0.03 3.28 16 19 C -0.02 -0.36 6.87 -35.63 -0.24 -0.60 16 20 C -0.18 -3.20 10.81 -39.70 -0.43 -3.63 16 21 C -0.21 -3.35 10.91 -39.70 -0.43 -3.78 16 22 C -0.06 -0.81 12.09 29.42 0.36 -0.45 16 23 O -0.17 -2.81 9.11 5.72 0.05 -2.76 16 24 H 0.07 1.13 6.28 -51.92 -0.33 0.80 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.65 6.39 -51.93 -0.33 0.32 16 30 H 0.06 1.05 7.99 -51.93 -0.42 0.64 16 31 H 0.07 0.91 7.31 -51.93 -0.38 0.53 16 32 H 0.07 0.87 7.86 -51.93 -0.41 0.46 16 33 H 0.04 1.28 7.50 -51.93 -0.39 0.89 16 34 H 0.03 0.86 7.86 -51.93 -0.41 0.45 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.11 1.63 7.84 -51.93 -0.41 1.23 16 37 H 0.08 1.20 5.78 -51.93 -0.30 0.90 16 38 H 0.15 2.64 8.06 -52.48 -0.42 2.22 16 39 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.19 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 337.74 15.07 5.09 5.09 Total: -1.00 -33.99 337.74 -6.64 -40.63 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -5.87 Total: 1.13 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -1.29 Total: -8.39 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.31 Total: -38.91 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: 0.14 Total: -16.89 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.99 -6.64 -40.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751193935.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.018 kcal (2) G-P(sol) polarization free energy of solvation -33.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds