Wall clock time and date at job start Mon Mar 30 2020 01:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.50703 * 119.99920 * 2 1 4 4 C 1.32990 * 120.00361 * 180.02562 * 2 1 3 5 5 C 1.50702 * 120.00138 * 185.21675 * 4 2 1 6 6 C 1.47096 * 120.00072 * 5.21841 * 4 2 1 7 7 O 1.21621 * 120.00317 * 255.21831 * 6 4 2 8 8 N 1.34777 * 120.00177 * 75.21959 * 6 4 2 9 9 C 1.46503 * 120.00055 * 185.45751 * 8 6 4 10 10 C 1.50705 * 109.46826 * 269.99534 * 9 8 6 11 11 H 1.08001 * 119.99843 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00195 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99629 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00262 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46872 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47449 * 119.99566 * 14 12 10 17 17 H 1.48498 * 109.47035 * 239.99795 * 14 12 10 18 18 C 1.46500 * 119.99837 * 5.44851 * 8 6 4 19 19 C 1.50700 * 109.46900 * 85.40114 * 18 8 6 20 20 C 1.34510 * 125.78704 * 94.94372 * 19 18 8 21 21 C 1.41388 * 106.84185 * 180.02562 * 20 19 18 22 22 C 1.34512 * 106.83681 * 359.97438 * 21 20 19 23 23 O 1.34300 * 125.79203 * 274.63507 * 19 18 8 24 24 H 1.09008 * 109.46850 * 185.07023 * 1 2 3 25 25 H 1.08998 * 109.47501 * 305.06116 * 1 2 3 26 26 H 1.08992 * 109.47461 * 65.06693 * 1 2 3 27 27 H 1.08993 * 109.47494 * 274.88660 * 3 2 1 28 28 H 1.09005 * 109.47000 * 34.88386 * 3 2 1 29 29 H 1.08998 * 109.46956 * 154.88091 * 3 2 1 30 30 H 1.09002 * 109.47560 * 185.01259 * 5 4 2 31 31 H 1.08999 * 109.47247 * 305.00909 * 5 4 2 32 32 H 1.08998 * 109.47103 * 65.01360 * 5 4 2 33 33 H 1.08997 * 109.47434 * 29.99584 * 9 8 6 34 34 H 1.09005 * 109.47255 * 149.99623 * 9 8 6 35 35 H 0.97003 * 119.99967 * 180.02562 * 13 12 10 36 36 H 1.08999 * 109.47373 * 205.40222 * 18 8 6 37 37 H 1.09003 * 109.47127 * 325.39950 * 18 8 6 38 38 H 1.08005 * 126.58336 * 0.03475 * 20 19 18 39 39 H 1.07998 * 126.57949 * 179.97438 * 21 20 19 40 40 H 1.08003 * 125.78877 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 3.6743 -1.1544 0.1181 6 6 1.4411 -2.4229 -0.1169 7 8 1.2910 -3.1299 0.8612 8 7 0.9379 -2.8043 -1.3076 9 6 0.1088 -4.0086 -1.4006 10 6 0.9866 -5.2029 -1.6734 11 1 2.0551 -5.0773 -1.7685 12 6 0.4256 -6.4557 -1.8027 13 7 -0.8756 -6.6085 -1.6874 14 14 1.5137 -7.9361 -2.1402 15 1 2.9306 -7.4998 -2.2247 16 1 1.3636 -8.9219 -1.0399 17 1 1.1118 -8.5631 -3.4249 18 6 1.2197 -2.0145 -2.5089 19 6 2.5365 -2.4497 -3.0986 20 6 2.6976 -3.3528 -4.0824 21 6 4.0875 -3.4550 -4.3209 22 6 4.6924 -2.6079 -3.4690 23 8 3.7477 -1.9975 -2.7351 24 1 -0.3633 -1.0237 0.0908 25 1 -0.3634 0.5903 0.8411 26 1 -0.3634 0.4332 -0.9318 27 1 2.3663 1.6636 -1.0238 28 1 1.7120 2.0413 0.5878 29 1 3.2479 1.1545 0.4362 30 1 4.0455 -2.1736 0.0103 31 1 4.1017 -0.5274 -0.6644 32 1 3.9624 -0.7642 1.0943 33 1 -0.4240 -4.1564 -0.4613 34 1 -0.6101 -3.8932 -2.2118 35 1 -1.2703 -7.4900 -1.7780 36 1 0.4257 -2.1685 -3.2396 37 1 1.2710 -0.9581 -2.2453 38 1 1.9155 -3.8955 -4.5924 39 1 4.5707 -4.0912 -5.0477 40 1 5.7569 -2.4430 -3.3916 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751193935.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:20 Heat of formation + Delta-G solvation = -29.548724 kcal Electronic energy + Delta-G solvation = -22659.096845 eV Core-core repulsion = 19440.197175 eV Total energy + Delta-G solvation = -3218.899670 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.32922 -40.98399 -37.22638 -36.87375 -34.76134 -33.74364 -31.55269 -31.32466 -29.77777 -28.48270 -26.77042 -25.98794 -24.56838 -22.52207 -21.84625 -21.06866 -19.04847 -18.76377 -17.98023 -17.36974 -16.99804 -16.50477 -16.35473 -16.26146 -15.41321 -15.03604 -14.88522 -14.49284 -14.12457 -13.92059 -13.79722 -13.52746 -13.48461 -13.44551 -13.30836 -13.08165 -12.95738 -12.93393 -12.73679 -12.59405 -12.53171 -12.27526 -12.10244 -11.74295 -10.71252 -10.68842 -10.63475 -9.73161 -9.48624 -9.25315 -8.23140 -6.33626 0.80998 0.88355 1.30750 1.33342 1.44960 1.68038 1.86271 2.27254 2.35259 2.52604 3.07322 3.66262 3.85750 3.97619 4.11475 4.19716 4.25708 4.41376 4.45628 4.51206 4.70726 4.73330 4.80677 4.85281 4.98392 5.00351 5.02046 5.04547 5.13050 5.13877 5.17733 5.21280 5.32856 5.52871 5.59721 5.70373 5.79488 5.85612 6.06694 6.33647 6.62411 6.74218 7.26217 7.41376 8.84811 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.007539 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.053206 B = 3713.264899 C = 4720.903956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.082 4.082 3 C -0.112 4.112 4 C -0.187 4.187 5 C -0.083 4.083 6 C 0.550 3.450 7 O -0.599 6.599 8 N -0.591 5.591 9 C 0.261 3.739 10 C -0.521 4.521 11 H 0.044 0.956 12 C 0.011 3.989 13 N -0.927 5.927 14 Si 0.956 3.044 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.267 1.267 18 C 0.195 3.805 19 C -0.038 4.038 20 C -0.201 4.201 21 C -0.235 4.235 22 C -0.040 4.040 23 O -0.174 6.174 24 H 0.026 0.974 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.028 0.972 31 H 0.096 0.904 32 H 0.081 0.919 33 H -0.002 1.002 34 H 0.032 0.968 35 H 0.266 0.734 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.135 0.865 39 H 0.160 0.840 40 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.194 17.417 -4.621 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.083 4.083 3 C -0.168 4.168 4 C -0.190 4.190 5 C -0.140 4.140 6 C 0.340 3.660 7 O -0.481 6.481 8 N -0.320 5.320 9 C 0.140 3.860 10 C -0.559 4.559 11 H 0.063 0.937 12 C -0.187 4.187 13 N -0.568 5.568 14 Si 0.781 3.219 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.192 1.192 18 C 0.072 3.928 19 C -0.090 4.090 20 C -0.221 4.221 21 C -0.254 4.254 22 C -0.108 4.108 23 O -0.069 6.069 24 H 0.045 0.955 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.048 0.952 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.017 0.983 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.153 0.847 39 H 0.178 0.822 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 8.983 17.127 -3.912 19.731 hybrid contribution 0.041 -2.022 -0.196 2.032 sum 9.024 15.105 -4.108 18.068 Atomic orbital electron populations 1.21026 0.91954 1.01338 1.04280 1.22355 0.95902 0.94751 0.95256 1.20924 0.99954 0.92042 1.03927 1.21291 0.97740 0.91061 1.08950 1.20515 0.88959 1.01487 1.03002 1.19226 0.77718 0.86606 0.82419 1.90730 1.60697 1.57265 1.39415 1.48260 1.49906 1.26970 1.06882 1.18850 0.89707 0.81729 0.95687 1.21553 0.93454 0.93057 1.47880 0.93745 1.25693 0.96284 1.01505 0.95235 1.70035 1.11280 1.24254 1.51220 0.85532 0.78918 0.79249 0.78154 1.19906 1.20827 1.19182 1.20051 0.89537 0.96236 0.86985 1.22858 0.86394 1.00963 0.98739 1.21755 0.97838 1.00941 1.01547 1.22089 0.93569 1.04709 1.05041 1.24721 0.95309 0.96986 0.93742 1.83995 1.14726 1.55302 1.52918 0.95505 0.89246 0.88615 0.88864 0.89878 0.90577 0.95227 0.88525 0.90021 0.98345 0.95009 0.92510 0.86695 0.86952 0.84673 0.82242 0.74422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 9.63 71.23 0.69 -2.55 16 2 C -0.08 -2.04 4.95 -17.62 -0.09 -2.13 16 3 C -0.11 -1.74 9.60 71.24 0.68 -1.05 16 4 C -0.19 -6.18 4.47 -18.71 -0.08 -6.27 16 5 C -0.08 -2.32 7.55 71.24 0.54 -1.78 16 6 C 0.55 25.06 5.01 86.57 0.43 25.49 16 7 O -0.60 -34.23 16.74 -4.10 -0.07 -34.29 16 8 N -0.59 -26.23 2.37 -834.77 -1.98 -28.22 16 9 C 0.26 14.29 5.16 85.63 0.44 14.73 16 10 C -0.52 -30.73 9.39 25.60 0.24 -30.49 16 11 H 0.04 2.71 7.81 -2.91 -0.02 2.68 16 12 C 0.01 0.67 5.46 84.65 0.46 1.14 16 13 N -0.93 -56.69 13.29 21.45 0.28 -56.40 16 14 Si 0.96 46.70 29.54 68.60 2.03 48.73 16 15 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 16 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 18 C 0.19 6.58 5.80 85.63 0.50 7.08 16 19 C -0.04 -1.33 6.87 24.83 0.17 -1.16 16 20 C -0.20 -7.13 10.81 22.19 0.24 -6.89 16 21 C -0.24 -6.99 10.91 22.19 0.24 -6.75 16 22 C -0.04 -1.04 12.09 66.97 0.81 -0.23 16 23 O -0.17 -5.33 9.11 -2.44 -0.02 -5.35 16 24 H 0.03 0.89 6.28 -2.38 -0.01 0.88 16 25 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.08 1.11 6.39 -2.39 -0.02 1.09 16 30 H 0.03 0.99 7.99 -2.39 -0.02 0.97 16 31 H 0.10 2.13 7.31 -2.39 -0.02 2.11 16 32 H 0.08 1.96 7.86 -2.39 -0.02 1.94 16 33 H 0.00 -0.10 7.50 -2.39 -0.02 -0.12 16 34 H 0.03 1.72 7.86 -2.38 -0.02 1.70 16 35 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.12 3.58 7.84 -2.39 -0.02 3.56 16 37 H 0.11 3.06 5.78 -2.39 -0.01 3.05 16 38 H 0.14 5.01 8.06 -2.91 -0.02 4.98 16 39 H 0.16 3.97 8.06 -2.91 -0.02 3.94 16 40 H 0.24 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -79.23 337.74 6.54 -72.70 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 1.02 Total: 13.70 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 5.27 Total: -10.87 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -1.70 Total: -84.62 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -0.09 Total: -39.64 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -79.23 6.54 -72.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751193935.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.148 kcal (2) G-P(sol) polarization free energy of solvation -79.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds