Wall clock time and date at job start Mon Mar 30 2020 01:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46747 * 2 1 4 4 O 1.42904 * 109.47110 * 240.00117 * 2 1 3 5 5 C 1.52995 * 109.46998 * 119.99752 * 2 1 3 6 6 N 1.46501 * 109.46781 * 184.99909 * 5 2 1 7 7 C 1.34784 * 119.99968 * 179.97438 * 6 5 2 8 8 O 1.21280 * 119.99871 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99906 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.46813 * 180.02562 * 9 7 6 11 11 C 1.37640 * 120.13180 * 265.30632 * 10 9 7 12 12 C 1.38613 * 120.24862 * 180.32332 * 11 10 9 13 13 C 1.38655 * 120.50174 * 359.67182 * 12 11 10 14 14 C 1.37598 * 120.24576 * 359.97438 * 13 12 11 15 15 C 1.40702 * 120.12495 * 85.00356 * 10 9 7 16 16 C 1.41393 * 120.24620 * 359.97406 * 15 10 9 17 17 H 1.07999 * 119.99787 * 29.07372 * 16 15 10 18 18 C 1.39938 * 120.00244 * 209.07592 * 16 15 10 19 19 N 1.30823 * 120.00241 * 197.10039 * 18 16 15 20 20 Si 1.86803 * 119.99882 * 17.09514 * 18 16 15 21 21 H 1.48495 * 109.47432 * 270.00073 * 20 18 16 22 22 H 1.48498 * 109.46929 * 30.00589 * 20 18 16 23 23 H 1.48504 * 109.46998 * 150.00206 * 20 18 16 24 24 H 1.08994 * 109.47296 * 300.00017 * 1 2 3 25 25 H 1.08995 * 109.47625 * 60.00460 * 1 2 3 26 26 H 1.09001 * 109.46930 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47156 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47375 * 299.99854 * 3 2 1 29 29 H 1.08994 * 109.47237 * 59.99946 * 3 2 1 30 30 H 0.96701 * 113.99593 * 59.99573 * 4 2 1 31 31 H 1.08998 * 109.47497 * 65.00676 * 5 2 1 32 32 H 1.09002 * 109.47570 * 305.00135 * 5 2 1 33 33 H 0.96998 * 120.00101 * 0.02562 * 6 5 2 34 34 H 1.08999 * 109.47299 * 60.00523 * 9 7 6 35 35 H 1.08998 * 109.47401 * 299.99992 * 9 7 6 36 36 H 1.08005 * 119.87130 * 0.02562 * 11 10 9 37 37 H 1.08001 * 119.74473 * 179.69460 * 12 11 10 38 38 H 1.08002 * 119.87493 * 180.02562 * 13 12 11 39 39 H 1.08003 * 120.12022 * 180.02562 * 14 13 12 40 40 H 0.97004 * 119.99819 * 355.45620 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 7 3.5000 -0.6178 1.3109 7 6 4.1730 -1.1825 2.3330 8 8 3.5700 -1.7766 3.2015 9 6 5.6749 -1.0756 2.3967 10 6 6.1773 -1.7861 3.6272 11 6 6.4011 -1.0821 4.7885 12 6 6.8695 -1.7319 5.9198 13 6 7.1114 -3.0970 5.8977 14 6 6.8877 -3.8221 4.7499 15 6 6.4132 -3.1728 3.5951 16 6 6.1802 -3.9076 2.4097 17 1 6.2824 -3.4274 1.4478 18 6 5.8170 -5.2571 2.4830 19 7 5.9249 -6.0218 1.4271 20 14 5.1783 -5.9666 4.0887 21 1 6.3169 -6.4862 4.8879 22 1 4.4790 -4.9045 4.8556 23 1 4.2312 -7.0731 3.7989 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.7209 -0.2701 -1.9980 31 1 1.7517 -1.7714 1.2056 32 1 1.6053 -0.2617 2.1370 33 1 3.9823 -0.1423 0.6165 34 1 5.9629 -0.0253 2.4403 35 1 6.1099 -1.5352 1.5093 36 1 6.2157 -0.0184 4.8170 37 1 7.0471 -1.1707 6.8252 38 1 7.4759 -3.5932 6.7851 39 1 7.0764 -4.8855 4.7351 40 1 6.1936 -5.6397 0.5769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777406274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:51 Heat of formation + Delta-G solvation = -84.160544 kcal Electronic energy + Delta-G solvation = -21727.174918 eV Core-core repulsion = 18505.907101 eV Total energy + Delta-G solvation = -3221.267817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.50113 -38.33379 -37.32952 -34.08957 -33.58181 -32.14538 -31.58950 -30.07741 -27.66824 -27.55765 -25.58132 -24.31240 -21.35840 -20.66667 -20.35124 -19.20864 -18.01256 -16.87757 -16.57939 -15.92889 -15.24892 -15.09072 -14.71842 -14.18874 -13.94017 -13.80263 -13.60354 -13.48133 -12.88220 -12.60232 -12.48915 -12.28605 -12.04965 -11.98498 -11.85938 -11.81860 -11.18781 -11.12485 -10.91597 -10.70631 -10.25163 -10.21808 -10.07430 -9.62679 -9.18790 -9.11521 -8.88570 -8.59834 -7.58003 -7.51207 -7.10044 -4.41326 2.66526 2.82808 3.32043 3.42135 3.50347 3.70372 3.74760 3.99178 4.17070 4.52712 4.67559 4.69641 4.75793 5.25275 5.35029 5.40777 5.47196 5.57577 5.73319 5.76907 5.83221 5.88161 5.91320 5.98355 6.12319 6.14620 6.28308 6.30858 6.62339 6.82186 6.87299 7.14223 7.43974 7.48347 7.59986 7.75126 7.79426 7.93125 8.03772 8.09843 8.49331 8.68490 8.89792 8.95458 10.15808 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018334 B = 0.005571 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.835521 B = 5024.985386 C = 5894.030535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.114 3.886 3 C -0.178 4.178 4 O -0.553 6.553 5 C 0.136 3.864 6 N -0.738 5.738 7 C 0.517 3.483 8 O -0.520 6.520 9 C -0.070 4.070 10 C -0.170 4.170 11 C -0.068 4.068 12 C -0.246 4.246 13 C -0.076 4.076 14 C -0.245 4.245 15 C 0.115 3.885 16 C -0.511 4.511 17 H 0.075 0.925 18 C 0.047 3.953 19 N -0.823 5.823 20 Si 1.071 2.929 21 H -0.280 1.280 22 H -0.258 1.258 23 H -0.293 1.293 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.374 0.626 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.396 0.604 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.474 13.127 -4.632 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.073 3.927 3 C -0.236 4.236 4 O -0.359 6.359 5 C 0.012 3.988 6 N -0.393 5.393 7 C 0.304 3.696 8 O -0.394 6.394 9 C -0.110 4.110 10 C -0.172 4.172 11 C -0.087 4.087 12 C -0.266 4.266 13 C -0.095 4.095 14 C -0.264 4.264 15 C 0.112 3.888 16 C -0.540 4.540 17 H 0.093 0.907 18 C -0.172 4.172 19 N -0.447 5.447 20 Si 0.898 3.102 21 H -0.207 1.207 22 H -0.182 1.182 23 H -0.221 1.221 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.221 0.779 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.231 0.769 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.122 0.878 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.142 10.857 -2.925 13.882 hybrid contribution 0.449 2.045 -1.721 2.710 sum -7.693 12.901 -4.645 15.723 Atomic orbital electron populations 1.22424 0.94969 1.03300 1.02717 1.21466 0.93166 0.91533 0.86509 1.22494 1.02417 0.96024 1.02657 1.86686 1.76967 1.56837 1.15385 1.21192 0.81785 1.01176 0.94675 1.46021 1.06612 1.59024 1.27674 1.20994 0.90468 0.77439 0.80654 1.90675 1.70101 1.40025 1.38593 1.20256 0.90828 1.00026 0.99915 1.19032 1.09824 0.94635 0.93718 1.20412 0.98047 0.97163 0.93046 1.20312 1.13824 0.94638 0.97784 1.20596 0.98297 0.94130 0.96438 1.21117 1.10907 0.99078 0.95311 1.17509 0.87642 0.91200 0.92439 1.20531 1.42819 0.96895 0.93784 0.90740 1.27152 0.91838 0.93404 1.04775 1.70563 1.33730 1.38155 1.02202 0.83641 0.76929 0.76284 0.73372 1.20672 1.18225 1.22087 0.91272 0.91987 0.91321 0.91555 0.92195 0.91272 0.77936 0.91063 0.90675 0.76912 0.90619 0.88975 0.89248 0.89063 0.88923 0.87816 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 8.81 37.16 0.33 -1.15 16 2 C 0.11 1.18 1.07 -90.62 -0.10 1.08 16 3 C -0.18 -1.47 8.59 37.16 0.32 -1.15 16 4 O -0.55 -6.22 12.93 -35.23 -0.46 -6.67 16 5 C 0.14 1.97 4.84 -4.04 -0.02 1.95 16 6 N -0.74 -11.81 5.19 -60.29 -0.31 -12.12 16 7 C 0.52 10.70 7.82 -10.98 -0.09 10.61 16 8 O -0.52 -13.14 16.03 5.56 0.09 -13.05 16 9 C -0.07 -1.41 5.36 -29.03 -0.16 -1.57 16 10 C -0.17 -4.08 4.43 -103.91 -0.46 -4.54 16 11 C -0.07 -1.53 9.66 -39.66 -0.38 -1.91 16 12 C -0.25 -5.46 10.05 -39.29 -0.39 -5.85 16 13 C -0.08 -1.77 10.02 -39.66 -0.40 -2.16 16 14 C -0.25 -6.29 7.26 -38.87 -0.28 -6.58 16 15 C 0.12 3.06 5.13 -106.83 -0.55 2.51 16 16 C -0.51 -14.19 8.80 -37.75 -0.33 -14.53 16 17 H 0.07 2.08 6.60 -52.49 -0.35 1.73 16 18 C 0.05 1.31 5.42 -17.34 -0.09 1.21 16 19 N -0.82 -23.26 13.65 55.55 0.76 -22.50 16 20 Si 1.07 26.84 24.89 -169.99 -4.23 22.61 16 21 H -0.28 -6.55 6.45 56.52 0.36 -6.18 16 22 H -0.26 -6.74 7.01 56.52 0.40 -6.35 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.58 6.58 -51.93 -0.34 0.24 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.37 2.52 9.05 45.56 0.41 2.93 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.40 5.31 6.99 -40.82 -0.29 5.02 16 34 H 0.08 1.23 8.06 -51.93 -0.42 0.81 16 35 H 0.09 1.85 6.51 -51.93 -0.34 1.52 16 36 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 37 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 39 H 0.10 2.64 4.43 -52.48 -0.23 2.41 16 40 H 0.28 7.74 8.73 -40.82 -0.36 7.38 16 LS Contribution 328.64 15.07 4.95 4.95 Total: -1.00 -33.40 328.64 -6.78 -40.18 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -4.97 Total: 8.67 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -2.60 Total: -22.07 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.45 Total: -34.62 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.37 Total: -19.73 kcal Atomic # 14 Polarization: 26.84 SS G_CDS: -4.23 Total: 22.61 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.40 -6.78 -40.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777406274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.980 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds