Wall clock time and date at job start Mon Mar 30 2020 01:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47391 * 2 1 4 4 C 1.53002 * 109.47330 * 239.99810 * 2 1 3 5 5 C 1.50706 * 109.46843 * 119.99899 * 2 1 3 6 6 O 1.21276 * 120.00067 * 0.02562 * 5 2 1 7 7 N 1.34775 * 119.99787 * 179.97438 * 5 2 1 8 8 O 1.41602 * 119.99982 * 180.02562 * 7 5 2 9 9 C 1.42902 * 113.99870 * 180.02562 * 8 7 5 10 10 C 1.50699 * 109.46874 * 179.97438 * 9 8 7 11 11 C 1.38631 * 119.75515 * 269.72905 * 10 9 8 12 12 C 1.37619 * 120.25144 * 179.72033 * 11 10 9 13 13 C 1.40714 * 119.74386 * 0.57097 * 12 11 10 14 14 C 1.41393 * 120.24509 * 179.67914 * 13 12 11 15 15 H 1.07995 * 120.00173 * 204.40462 * 14 13 12 16 16 C 1.39951 * 119.99977 * 24.40927 * 14 13 12 17 17 N 1.30824 * 119.99980 * 17.84393 * 16 14 13 18 18 Si 1.86798 * 119.99882 * 197.84482 * 16 14 13 19 19 H 1.48502 * 109.46852 * 90.00121 * 18 16 14 20 20 H 1.48499 * 109.47159 * 209.99626 * 18 16 14 21 21 H 1.48500 * 109.47412 * 330.00211 * 18 16 14 22 22 C 1.40715 * 119.51170 * 359.70554 * 13 12 11 23 23 C 1.37622 * 119.74625 * 359.97438 * 22 13 12 24 24 H 1.08998 * 109.47424 * 300.00050 * 1 2 3 25 25 H 1.09001 * 109.47145 * 59.99841 * 1 2 3 26 26 H 1.09004 * 109.47469 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47386 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47397 * 299.99732 * 3 2 1 29 29 H 1.09002 * 109.47580 * 59.99773 * 3 2 1 30 30 H 1.09004 * 109.47030 * 300.00495 * 4 2 1 31 31 H 1.09000 * 109.47197 * 59.99858 * 4 2 1 32 32 H 1.09000 * 109.47350 * 179.97438 * 4 2 1 33 33 H 0.96999 * 120.00304 * 0.02562 * 7 5 2 34 34 H 1.08987 * 109.47319 * 299.99654 * 9 8 7 35 35 H 1.09003 * 109.46824 * 60.00336 * 9 8 7 36 36 H 1.08006 * 119.87409 * 359.97438 * 11 10 9 37 37 H 1.07998 * 120.12682 * 180.28052 * 12 11 10 38 38 H 0.96993 * 120.00420 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.12779 * 179.97438 * 22 13 12 40 40 H 1.07994 * 119.87708 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2305 6 8 1.2441 -1.1717 2.0286 7 7 3.3573 -0.8340 1.4436 8 8 3.8293 -1.5020 2.5995 9 6 5.2538 -1.5583 2.6972 10 6 5.6424 -2.2863 3.9582 11 6 5.8252 -1.5757 5.1344 12 6 6.1744 -2.2308 6.2932 13 6 6.3577 -3.6259 6.2783 14 6 6.7231 -4.3089 7.4612 15 1 7.2360 -5.2573 7.4006 16 6 6.4201 -3.7558 8.7105 17 7 5.5164 -2.8148 8.8076 18 14 7.3061 -4.3612 10.2396 19 1 8.5315 -3.5505 10.4551 20 1 6.4104 -4.2269 11.4164 21 1 7.6807 -5.7872 10.0627 22 6 6.1750 -4.3362 5.0774 23 6 5.8193 -3.6612 3.9321 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7209 -1.2495 33 1 3.9877 -0.4654 0.8051 34 1 5.6567 -2.0869 1.8334 35 1 5.6565 -0.5458 2.7240 36 1 5.6890 -0.5042 5.1423 37 1 6.3119 -1.6757 7.2093 38 1 5.3061 -2.4318 9.6735 39 1 6.3135 -5.4071 5.0546 40 1 5.6782 -4.2043 3.0094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784053317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:45 Heat of formation + Delta-G solvation = -32.701149 kcal Electronic energy + Delta-G solvation = -20715.303207 eV Core-core repulsion = 17496.266837 eV Total energy + Delta-G solvation = -3219.036370 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.88048 -37.93680 -36.63613 -35.59312 -33.89932 -32.03365 -30.17022 -29.33910 -27.64909 -27.34367 -26.76018 -23.71551 -23.07097 -21.08431 -20.27959 -19.28240 -17.77517 -17.37380 -16.69992 -15.54334 -15.33219 -15.01831 -14.63303 -14.48655 -14.10775 -13.86489 -13.59319 -12.95157 -12.90882 -12.58491 -12.46555 -12.44025 -12.10360 -12.00770 -11.96611 -11.70387 -11.24035 -11.20102 -11.19045 -11.00271 -10.85395 -10.59885 -10.40084 -9.81826 -9.55613 -9.45068 -9.22126 -8.55460 -7.55041 -7.44033 -6.84376 -4.44891 2.06213 2.74163 2.76075 3.02165 3.04162 3.07232 3.15592 3.87197 4.29586 4.47342 4.50390 4.61664 4.94025 5.05443 5.24322 5.33758 5.41726 5.53290 5.57021 5.57725 5.64035 5.65814 5.70012 5.80889 5.94767 5.98348 6.11154 6.26949 6.31848 6.88436 6.99335 7.16206 7.20118 7.27894 7.44128 7.53065 7.75537 7.97224 8.01334 8.20757 8.46706 8.55474 8.80176 8.88332 10.09393 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038049 B = 0.003042 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.715589 B = 9201.122763 C = 9438.016301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.075 4.075 3 C -0.143 4.143 4 C -0.143 4.143 5 C 0.527 3.473 6 O -0.522 6.522 7 N -0.604 5.604 8 O -0.139 6.139 9 C 0.101 3.899 10 C -0.230 4.230 11 C -0.075 4.075 12 C -0.170 4.170 13 C 0.119 3.881 14 C -0.456 4.456 15 H 0.081 0.919 16 C 0.074 3.926 17 N -0.783 5.783 18 Si 0.911 3.089 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.261 1.261 22 C -0.230 4.230 23 C -0.063 4.063 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.399 0.601 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.283 0.717 39 H 0.095 0.905 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.864 7.628 -15.685 17.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.079 4.079 3 C -0.201 4.201 4 C -0.200 4.200 5 C 0.313 3.687 6 O -0.396 6.396 7 N -0.304 5.304 8 O -0.142 6.142 9 C 0.025 3.975 10 C -0.233 4.233 11 C -0.093 4.093 12 C -0.190 4.190 13 C 0.116 3.884 14 C -0.485 4.485 15 H 0.099 0.901 16 C -0.145 4.145 17 N -0.408 5.408 18 Si 0.736 3.264 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.185 1.185 22 C -0.249 4.249 23 C -0.081 4.081 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.238 0.762 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.138 0.862 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.699 7.343 -14.766 16.901 hybrid contribution 0.940 -0.056 0.468 1.051 sum -2.759 7.287 -14.299 16.284 Atomic orbital electron populations 1.21679 0.91440 1.03202 1.02218 1.20789 0.98244 0.96193 0.92632 1.21918 1.01212 0.93732 1.03202 1.21918 1.01202 1.00976 0.95945 1.20605 0.80290 0.80246 0.87572 1.90733 1.54601 1.47791 1.46434 1.47652 1.06335 1.57623 1.18795 1.90874 1.23520 1.73475 1.26363 1.21640 0.79554 0.98773 0.97523 1.18506 1.17699 0.93860 0.93278 1.20526 0.98856 0.97325 0.92635 1.21288 1.06441 0.94571 0.96665 1.17688 0.86913 0.91823 0.91999 1.19688 1.32818 1.05975 0.90009 0.90131 1.25989 0.93293 0.93947 1.01268 1.69833 1.22571 1.21137 1.27234 0.86257 0.79982 0.80381 0.79819 1.19158 1.20193 1.18504 1.20956 1.12333 0.97786 0.93868 1.20379 0.98114 0.92886 0.96747 0.91648 0.91795 0.91667 0.92155 0.91107 0.91653 0.91677 0.91107 0.92160 0.76239 0.93254 0.93192 0.89324 0.86216 0.90585 0.88691 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 7.76 37.16 0.29 -0.96 16 2 C -0.07 -0.75 0.87 -155.66 -0.14 -0.88 16 3 C -0.14 -1.10 8.37 37.15 0.31 -0.79 16 4 C -0.14 -1.08 8.37 37.16 0.31 -0.77 16 5 C 0.53 8.15 6.63 -10.98 -0.07 8.08 16 6 O -0.52 -10.84 16.39 -12.63 -0.21 -11.04 16 7 N -0.60 -9.07 6.18 31.22 0.19 -8.87 16 8 O -0.14 -2.80 11.09 -29.66 -0.33 -3.13 16 9 C 0.10 1.83 6.34 36.01 0.23 2.06 16 10 C -0.23 -5.19 5.53 -104.33 -0.58 -5.77 16 11 C -0.07 -1.79 9.67 -39.66 -0.38 -2.17 16 12 C -0.17 -4.47 8.70 -38.87 -0.34 -4.81 16 13 C 0.12 3.18 5.57 -106.83 -0.60 2.59 16 14 C -0.46 -12.06 9.05 -37.74 -0.34 -12.40 16 15 H 0.08 2.03 7.91 -52.49 -0.41 1.62 16 16 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 17 N -0.78 -20.37 10.95 55.55 0.61 -19.76 16 18 Si 0.91 18.48 29.60 -169.99 -5.03 13.45 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 20 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 21 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 22 C -0.23 -5.72 9.80 -38.87 -0.38 -6.10 16 23 C -0.06 -1.44 9.67 -39.66 -0.38 -1.83 16 24 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 27 H 0.06 0.40 7.57 -51.93 -0.39 0.01 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.39 7.56 -51.93 -0.39 0.00 16 33 H 0.40 4.26 7.38 -40.82 -0.30 3.96 16 34 H 0.05 0.78 8.08 -51.94 -0.42 0.36 16 35 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 36 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 37 H 0.12 3.22 6.16 -52.49 -0.32 2.89 16 38 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 39 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 40 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 339.10 15.07 5.11 5.11 Total: -1.00 -32.19 339.10 -7.84 -40.03 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.02 Total: 6.20 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -2.16 Total: -21.99 kcal Atomic # 7 Polarization: -29.43 SS G_CDS: 0.80 Total: -28.63 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.54 Total: -14.17 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.19 -7.84 -40.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784053317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.327 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds