Wall clock time and date at job start Mon Mar 30 2020 01:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47391 * 2 1 4 4 C 1.53002 * 109.47330 * 239.99810 * 2 1 3 5 5 C 1.50706 * 109.46843 * 119.99899 * 2 1 3 6 6 O 1.21276 * 120.00067 * 0.02562 * 5 2 1 7 7 N 1.34775 * 119.99787 * 179.97438 * 5 2 1 8 8 O 1.41602 * 119.99982 * 180.02562 * 7 5 2 9 9 C 1.42902 * 113.99870 * 180.02562 * 8 7 5 10 10 C 1.50699 * 109.46874 * 179.97438 * 9 8 7 11 11 C 1.38631 * 119.75515 * 269.72905 * 10 9 8 12 12 C 1.37619 * 120.25144 * 179.72033 * 11 10 9 13 13 C 1.40714 * 119.74386 * 0.57097 * 12 11 10 14 14 C 1.41393 * 120.24509 * 179.67914 * 13 12 11 15 15 H 1.07995 * 120.00173 * 204.40462 * 14 13 12 16 16 C 1.39951 * 119.99977 * 24.40927 * 14 13 12 17 17 N 1.30824 * 119.99980 * 17.84393 * 16 14 13 18 18 Si 1.86798 * 119.99882 * 197.84482 * 16 14 13 19 19 H 1.48502 * 109.46852 * 90.00121 * 18 16 14 20 20 H 1.48499 * 109.47159 * 209.99626 * 18 16 14 21 21 H 1.48500 * 109.47412 * 330.00211 * 18 16 14 22 22 C 1.40715 * 119.51170 * 359.70554 * 13 12 11 23 23 C 1.37622 * 119.74625 * 359.97438 * 22 13 12 24 24 H 1.08998 * 109.47424 * 300.00050 * 1 2 3 25 25 H 1.09001 * 109.47145 * 59.99841 * 1 2 3 26 26 H 1.09004 * 109.47469 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47386 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47397 * 299.99732 * 3 2 1 29 29 H 1.09002 * 109.47580 * 59.99773 * 3 2 1 30 30 H 1.09004 * 109.47030 * 300.00495 * 4 2 1 31 31 H 1.09000 * 109.47197 * 59.99858 * 4 2 1 32 32 H 1.09000 * 109.47350 * 179.97438 * 4 2 1 33 33 H 0.96999 * 120.00304 * 0.02562 * 7 5 2 34 34 H 1.08987 * 109.47319 * 299.99654 * 9 8 7 35 35 H 1.09003 * 109.46824 * 60.00336 * 9 8 7 36 36 H 1.08006 * 119.87409 * 359.97438 * 11 10 9 37 37 H 1.07998 * 120.12682 * 180.28052 * 12 11 10 38 38 H 0.96993 * 120.00420 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.12779 * 179.97438 * 22 13 12 40 40 H 1.07994 * 119.87708 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2305 6 8 1.2441 -1.1717 2.0286 7 7 3.3573 -0.8340 1.4436 8 8 3.8293 -1.5020 2.5995 9 6 5.2538 -1.5583 2.6972 10 6 5.6424 -2.2863 3.9582 11 6 5.8252 -1.5757 5.1344 12 6 6.1744 -2.2308 6.2932 13 6 6.3577 -3.6259 6.2783 14 6 6.7231 -4.3089 7.4612 15 1 7.2360 -5.2573 7.4006 16 6 6.4201 -3.7558 8.7105 17 7 5.5164 -2.8148 8.8076 18 14 7.3061 -4.3612 10.2396 19 1 8.5315 -3.5505 10.4551 20 1 6.4104 -4.2269 11.4164 21 1 7.6807 -5.7872 10.0627 22 6 6.1750 -4.3362 5.0774 23 6 5.8193 -3.6612 3.9321 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7209 -1.2495 33 1 3.9877 -0.4654 0.8051 34 1 5.6567 -2.0869 1.8334 35 1 5.6565 -0.5458 2.7240 36 1 5.6890 -0.5042 5.1423 37 1 6.3119 -1.6757 7.2093 38 1 5.3061 -2.4318 9.6735 39 1 6.3135 -5.4071 5.0546 40 1 5.6782 -4.2043 3.0094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784053317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:44 Heat of formation + Delta-G solvation = -51.621511 kcal Electronic energy + Delta-G solvation = -20716.123655 eV Core-core repulsion = 17496.266837 eV Total energy + Delta-G solvation = -3219.856818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.04682 -39.69972 -38.12915 -36.62411 -35.73452 -33.46567 -31.88988 -31.23602 -28.59847 -28.21684 -27.97543 -25.42857 -24.15432 -22.99180 -22.02640 -20.48360 -19.30471 -18.97645 -17.80041 -17.28005 -16.71759 -16.34042 -15.96308 -15.87485 -15.69103 -14.93591 -14.81701 -14.54217 -14.29563 -14.01497 -13.87819 -13.56319 -13.30695 -13.04964 -12.96356 -12.89967 -12.72246 -12.62922 -12.60599 -12.15591 -11.99754 -11.92572 -11.88764 -11.58328 -11.33745 -11.09223 -10.83910 -9.91124 -9.47157 -9.36453 -8.71148 -6.43108 0.57654 1.06555 1.13902 1.36309 1.50714 1.52353 1.57464 2.17325 2.63857 3.34796 3.59864 3.79071 3.89687 3.90369 4.11932 4.15217 4.23134 4.45141 4.48041 4.53889 4.72085 4.73414 4.82624 4.94816 4.95220 4.97076 4.99815 5.09001 5.22172 5.27824 5.35008 5.35609 5.36833 5.61981 5.80195 5.88560 6.02372 6.10876 6.29222 6.31951 6.61410 6.85428 6.94245 7.28094 8.25699 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038049 B = 0.003042 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.715589 B = 9201.122763 C = 9438.016301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.065 4.065 3 C -0.142 4.142 4 C -0.141 4.141 5 C 0.518 3.482 6 O -0.585 6.585 7 N -0.586 5.586 8 O -0.183 6.183 9 C 0.107 3.893 10 C -0.228 4.228 11 C -0.083 4.083 12 C -0.196 4.196 13 C 0.086 3.914 14 C -0.494 4.494 15 H 0.081 0.919 16 C 0.032 3.968 17 N -0.821 5.821 18 Si 0.989 3.011 19 H -0.259 1.259 20 H -0.268 1.268 21 H -0.256 1.256 22 C -0.248 4.248 23 C -0.067 4.067 24 H 0.045 0.955 25 H 0.100 0.900 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.422 0.578 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.290 0.710 39 H 0.102 0.898 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.355 8.760 -18.241 20.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.068 4.068 3 C -0.199 4.199 4 C -0.199 4.199 5 C 0.307 3.693 6 O -0.463 6.463 7 N -0.288 5.288 8 O -0.188 6.188 9 C 0.031 3.969 10 C -0.231 4.231 11 C -0.101 4.101 12 C -0.215 4.215 13 C 0.083 3.917 14 C -0.523 4.523 15 H 0.099 0.901 16 C -0.183 4.183 17 N -0.447 5.447 18 Si 0.808 3.192 19 H -0.183 1.183 20 H -0.193 1.193 21 H -0.180 1.180 22 C -0.267 4.267 23 C -0.086 4.086 24 H 0.064 0.936 25 H 0.119 0.881 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.120 0.880 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.265 0.735 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.155 8.494 -17.370 19.592 hybrid contribution 0.687 -0.334 1.064 1.310 sum -2.468 8.160 -16.306 18.400 Atomic orbital electron populations 1.21735 0.91603 1.02325 1.03046 1.20907 0.98048 0.97250 0.90605 1.21972 1.02169 0.91740 1.04042 1.21970 1.02177 1.00220 0.95494 1.21948 0.79662 0.79244 0.88452 1.90706 1.56132 1.50538 1.48937 1.47702 1.06862 1.56805 1.17461 1.90802 1.24267 1.74535 1.29211 1.21597 0.79066 1.00034 0.96199 1.18994 1.15391 0.94033 0.94633 1.20815 0.98249 0.98445 0.92612 1.21281 1.08393 0.94704 0.97133 1.18056 0.87985 0.92459 0.93158 1.19945 1.34508 1.06702 0.91124 0.90132 1.26897 0.93428 0.93822 1.04192 1.69892 1.23820 1.22480 1.28468 0.85110 0.78703 0.79895 0.75444 1.18332 1.19275 1.17973 1.21190 1.12888 0.98379 0.94254 1.20748 0.97041 0.93508 0.97254 0.93587 0.88110 0.93479 0.90720 0.87966 0.93166 0.93036 0.87995 0.90694 0.73534 0.90179 0.90724 0.87510 0.87847 0.89894 0.88022 0.86328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 7.76 71.98 0.56 -1.79 16 2 C -0.06 -1.13 0.87 -52.93 -0.05 -1.17 16 3 C -0.14 -1.67 8.37 71.98 0.60 -1.06 16 4 C -0.14 -1.61 8.37 71.98 0.60 -1.01 16 5 C 0.52 15.56 6.63 87.66 0.58 16.14 16 6 O -0.58 -24.89 16.39 14.38 0.24 -24.66 16 7 N -0.59 -16.38 6.18 -173.53 -1.07 -17.45 16 8 O -0.18 -7.14 11.09 -21.39 -0.24 -7.38 16 9 C 0.11 3.58 6.34 71.24 0.45 4.03 16 10 C -0.23 -10.03 5.53 -19.67 -0.11 -10.14 16 11 C -0.08 -3.99 9.67 22.22 0.21 -3.77 16 12 C -0.20 -10.68 8.70 22.73 0.20 -10.48 16 13 C 0.09 4.80 5.57 -21.29 -0.12 4.68 16 14 C -0.49 -27.17 9.05 23.46 0.21 -26.96 16 15 H 0.08 4.23 7.91 -2.91 -0.02 4.21 16 16 C 0.03 1.66 5.14 85.26 0.44 2.09 16 17 N -0.82 -44.29 10.95 21.83 0.24 -44.06 16 18 Si 0.99 38.55 29.60 68.60 2.03 40.58 16 19 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 20 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 21 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 22 C -0.25 -12.59 9.80 22.73 0.22 -12.36 16 23 C -0.07 -3.05 9.67 22.22 0.21 -2.83 16 24 H 0.04 1.00 8.10 -2.39 -0.02 0.98 16 25 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.05 1.01 8.10 -2.38 -0.02 0.99 16 27 H 0.07 0.67 7.57 -2.39 -0.02 0.65 16 28 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.64 7.56 -2.39 -0.02 0.63 16 33 H 0.42 7.50 7.38 -92.71 -0.68 6.82 16 34 H 0.08 2.20 8.08 -2.39 -0.02 2.18 16 35 H 0.07 2.13 8.08 -2.39 -0.02 2.11 16 36 H 0.11 4.62 8.06 -2.91 -0.02 4.59 16 37 H 0.10 5.86 6.16 -2.91 -0.02 5.85 16 38 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 39 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 40 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -74.98 339.10 5.57 -69.41 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.35 Total: 28.19 kcal Atomic # 6 Polarization: -48.67 SS G_CDS: 4.02 Total: -44.64 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -0.83 Total: -61.51 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: 0.00 Total: -32.03 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -74.98 5.57 -69.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784053317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.790 kcal (2) G-P(sol) polarization free energy of solvation -74.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds