Wall clock time and date at job start Mon Mar 30 2020 02:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47531 * 2 1 4 4 C 1.52997 * 109.47473 * 120.00207 * 2 1 3 5 5 O 1.42898 * 109.47482 * 174.99499 * 4 2 1 6 6 C 1.35656 * 117.00079 * 179.97438 * 5 4 2 7 7 C 1.38714 * 120.14915 * 359.97438 * 6 5 4 8 8 C 1.38051 * 120.08468 * 179.97438 * 7 6 5 9 9 C 1.38555 * 120.38906 * 0.02562 * 8 7 6 10 10 C 1.37785 * 120.30047 * 0.02562 * 9 8 7 11 11 C 1.39713 * 119.90793 * 359.97438 * 10 9 8 12 12 C 1.47535 * 120.19038 * 180.02562 * 11 10 9 13 13 O 1.21581 * 119.99746 * 179.97438 * 12 11 10 14 14 N 1.34774 * 119.99732 * 359.97438 * 12 11 10 15 15 C 1.46506 * 119.99862 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47225 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00017 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99907 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00275 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00088 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47213 * 89.99840 * 20 18 16 22 22 H 1.48500 * 109.47426 * 209.99962 * 20 18 16 23 23 H 1.48503 * 109.46889 * 329.99694 * 20 18 16 24 24 H 1.09001 * 109.47003 * 300.00347 * 1 2 3 25 25 H 1.09002 * 109.47365 * 59.99665 * 1 2 3 26 26 H 1.09001 * 109.47664 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46946 * 240.00127 * 2 1 3 28 28 H 1.09002 * 109.47070 * 300.00515 * 3 2 1 29 29 H 1.09001 * 109.47261 * 59.99811 * 3 2 1 30 30 H 1.08995 * 109.47613 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46984 * 54.99755 * 4 2 1 32 32 H 1.09003 * 109.46873 * 295.00197 * 4 2 1 33 33 H 1.07995 * 119.95834 * 0.02706 * 7 6 5 34 34 H 1.07997 * 119.80544 * 180.27727 * 8 7 6 35 35 H 1.07998 * 119.84759 * 179.97438 * 9 8 7 36 36 H 1.07996 * 120.04295 * 180.02562 * 10 9 8 37 37 H 0.97003 * 120.00649 * 0.02562 * 14 12 11 38 38 H 1.09000 * 109.46797 * 299.99981 * 15 14 12 39 39 H 1.09005 * 109.46904 * 59.99644 * 15 14 12 40 40 H 0.96993 * 120.00355 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 3.4642 -0.8239 1.1919 6 6 4.0794 -1.4414 2.2313 7 6 3.3310 -1.9395 3.2877 8 6 3.9585 -2.5681 4.3445 9 6 5.3371 -2.7060 4.3596 10 6 6.0961 -2.2162 3.3191 11 6 5.4740 -1.5779 2.2432 12 6 6.2807 -1.0517 1.1256 13 8 5.7356 -0.4972 0.1909 14 7 7.6217 -1.1856 1.1409 15 6 8.4227 -0.6625 0.0314 16 6 9.8812 -0.9396 0.2904 17 1 10.1814 -1.4535 1.1916 18 6 10.8323 -0.5361 -0.6225 19 7 10.4667 0.0902 -1.7197 20 14 12.6402 -0.8789 -0.3011 21 1 13.0042 -2.1977 -0.8785 22 1 13.4652 0.1824 -0.9322 23 1 12.8885 -0.8939 1.1629 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6054 -1.7198 1.2951 32 1 1.7516 -0.1583 2.1369 33 1 2.2560 -1.8362 3.2829 34 1 3.3711 -2.9582 5.1625 35 1 5.8189 -3.1989 5.1910 36 1 7.1703 -2.3264 3.3349 37 1 8.0565 -1.6283 1.8865 38 1 8.1200 -1.1487 -0.8961 39 1 8.2664 0.4129 -0.0543 40 1 11.1358 0.3744 -2.3618 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787621079.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:16 Heat of formation + Delta-G solvation = -66.658152 kcal Electronic energy + Delta-G solvation = -21118.948201 eV Core-core repulsion = 17898.439345 eV Total energy + Delta-G solvation = -3220.508856 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.33114 -38.41652 -37.33774 -35.25363 -34.06316 -32.37679 -31.08077 -29.88014 -27.27921 -27.20237 -26.50907 -23.87161 -22.53700 -21.71838 -20.39395 -19.56356 -18.40710 -17.21488 -16.24242 -15.91982 -15.83483 -14.96731 -14.70755 -14.57147 -14.52691 -14.20440 -13.95442 -13.66925 -13.09949 -12.72357 -12.60199 -12.50193 -12.22302 -11.95001 -11.67003 -11.63204 -11.35777 -11.25316 -11.08898 -10.93478 -10.85231 -10.68600 -10.62813 -10.26992 -9.34555 -8.97841 -8.93907 -8.68193 -8.15555 -7.74045 -6.12363 -4.18994 1.04785 1.45350 3.23380 3.26988 3.32866 3.35392 3.38401 4.12854 4.24709 4.40723 4.62733 4.71973 4.83118 4.86352 4.97348 5.08654 5.21671 5.23661 5.26897 5.34491 5.46058 5.51349 5.60639 5.66855 5.76316 5.83056 5.89859 5.99295 6.20423 6.26716 6.29651 6.44331 6.46152 6.75076 7.37081 7.51635 7.54409 7.59090 7.73927 8.02224 8.70819 8.84943 9.20934 9.47793 10.97928 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018707 B = 0.004173 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.426748 B = 6708.686246 C = 8097.162691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.148 4.148 4 C 0.057 3.943 5 O -0.271 6.271 6 C 0.182 3.818 7 C -0.225 4.225 8 C -0.064 4.064 9 C -0.170 4.170 10 C -0.050 4.050 11 C -0.160 4.160 12 C 0.540 3.460 13 O -0.533 6.533 14 N -0.711 5.711 15 C 0.251 3.749 16 C -0.542 4.542 17 H 0.062 0.938 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.387 0.613 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.616 -3.908 11.024 21.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.018 4.018 5 O -0.182 6.182 6 C 0.133 3.867 7 C -0.244 4.244 8 C -0.082 4.082 9 C -0.189 4.189 10 C -0.069 4.069 11 C -0.164 4.164 12 C 0.326 3.674 13 O -0.411 6.411 14 N -0.360 5.360 15 C 0.131 3.869 16 C -0.581 4.581 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.152 0.848 37 H 0.221 0.779 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.826 -3.299 9.945 20.677 hybrid contribution 1.045 -0.496 0.692 1.347 sum -16.781 -3.795 10.637 20.228 Atomic orbital electron populations 1.21782 0.94180 1.01862 1.02302 1.21084 0.95169 0.97393 0.97583 1.21818 1.03114 0.94482 1.01116 1.22970 0.79645 0.99976 0.99245 1.86417 1.20396 1.71601 1.39798 1.19052 0.91073 0.89971 0.86573 1.21188 1.00053 1.06890 0.96263 1.21021 0.94708 0.95661 0.96831 1.20950 0.93865 1.04252 0.99784 1.21280 1.00195 0.93657 0.91724 1.19768 0.91130 1.06941 0.98527 1.17978 0.82822 0.80733 0.85909 1.90769 1.71568 1.43242 1.35531 1.46388 1.05581 1.58617 1.25430 1.19094 0.88737 0.94841 0.84248 1.21229 0.90848 1.39301 1.06675 0.91943 1.24946 0.99515 0.94737 0.94805 1.69977 1.34300 1.38191 1.09827 0.86423 0.84058 0.78019 0.78452 1.20481 1.21029 1.19747 0.92568 0.91775 0.92576 0.89775 0.92676 0.93177 0.90821 0.92319 0.92261 0.85308 0.85782 0.85555 0.84764 0.77909 0.95488 0.95476 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.19 37.15 0.34 -0.84 16 2 C -0.09 -1.07 3.16 -90.63 -0.29 -1.36 16 3 C -0.15 -1.83 9.09 37.16 0.34 -1.49 16 4 C 0.06 0.69 4.12 37.16 0.15 0.84 16 5 O -0.27 -4.62 7.74 -40.55 -0.31 -4.94 16 6 C 0.18 2.94 6.70 -38.70 -0.26 2.69 16 7 C -0.23 -2.78 9.03 -39.47 -0.36 -3.13 16 8 C -0.06 -0.69 10.03 -39.53 -0.40 -1.08 16 9 C -0.17 -1.94 10.02 -39.63 -0.40 -2.34 16 10 C -0.05 -0.70 9.54 -39.20 -0.37 -1.07 16 11 C -0.16 -2.82 5.89 -104.85 -0.62 -3.44 16 12 C 0.54 12.01 7.76 -12.47 -0.10 11.91 16 13 O -0.53 -13.78 15.16 -16.58 -0.25 -14.03 16 14 N -0.71 -15.96 5.50 -62.53 -0.34 -16.30 16 15 C 0.25 6.89 5.43 -5.19 -0.03 6.86 16 16 C -0.54 -15.00 9.28 -34.44 -0.32 -15.32 16 17 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 18 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 20 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 1.16 7.82 -51.93 -0.41 0.76 16 31 H 0.06 0.60 7.66 -51.93 -0.40 0.21 16 32 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 33 H 0.13 1.25 6.30 -52.49 -0.33 0.92 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.13 1.68 6.40 -52.49 -0.34 1.35 16 37 H 0.39 7.43 6.35 -40.82 -0.26 7.17 16 38 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 336.60 15.07 5.07 5.07 Total: -1.00 -33.62 336.60 -8.41 -42.03 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -5.89 Total: 3.91 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -2.40 Total: -6.08 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.39 Total: -42.03 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.57 Total: -18.96 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.62 -8.41 -42.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787621079.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.629 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds