Wall clock time and date at job start Mon Mar 30 2020 02:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47531 * 2 1 4 4 C 1.52997 * 109.47473 * 120.00207 * 2 1 3 5 5 O 1.42898 * 109.47482 * 174.99499 * 4 2 1 6 6 C 1.35656 * 117.00079 * 179.97438 * 5 4 2 7 7 C 1.38714 * 120.14915 * 359.97438 * 6 5 4 8 8 C 1.38051 * 120.08468 * 179.97438 * 7 6 5 9 9 C 1.38555 * 120.38906 * 0.02562 * 8 7 6 10 10 C 1.37785 * 120.30047 * 0.02562 * 9 8 7 11 11 C 1.39713 * 119.90793 * 359.97438 * 10 9 8 12 12 C 1.47535 * 120.19038 * 180.02562 * 11 10 9 13 13 O 1.21581 * 119.99746 * 179.97438 * 12 11 10 14 14 N 1.34774 * 119.99732 * 359.97438 * 12 11 10 15 15 C 1.46506 * 119.99862 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47225 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00017 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99907 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00275 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00088 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47213 * 89.99840 * 20 18 16 22 22 H 1.48500 * 109.47426 * 209.99962 * 20 18 16 23 23 H 1.48503 * 109.46889 * 329.99694 * 20 18 16 24 24 H 1.09001 * 109.47003 * 300.00347 * 1 2 3 25 25 H 1.09002 * 109.47365 * 59.99665 * 1 2 3 26 26 H 1.09001 * 109.47664 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46946 * 240.00127 * 2 1 3 28 28 H 1.09002 * 109.47070 * 300.00515 * 3 2 1 29 29 H 1.09001 * 109.47261 * 59.99811 * 3 2 1 30 30 H 1.08995 * 109.47613 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46984 * 54.99755 * 4 2 1 32 32 H 1.09003 * 109.46873 * 295.00197 * 4 2 1 33 33 H 1.07995 * 119.95834 * 0.02706 * 7 6 5 34 34 H 1.07997 * 119.80544 * 180.27727 * 8 7 6 35 35 H 1.07998 * 119.84759 * 179.97438 * 9 8 7 36 36 H 1.07996 * 120.04295 * 180.02562 * 10 9 8 37 37 H 0.97003 * 120.00649 * 0.02562 * 14 12 11 38 38 H 1.09000 * 109.46797 * 299.99981 * 15 14 12 39 39 H 1.09005 * 109.46904 * 59.99644 * 15 14 12 40 40 H 0.96993 * 120.00355 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 3.4642 -0.8239 1.1919 6 6 4.0794 -1.4414 2.2313 7 6 3.3310 -1.9395 3.2877 8 6 3.9585 -2.5681 4.3445 9 6 5.3371 -2.7060 4.3596 10 6 6.0961 -2.2162 3.3191 11 6 5.4740 -1.5779 2.2432 12 6 6.2807 -1.0517 1.1256 13 8 5.7356 -0.4972 0.1909 14 7 7.6217 -1.1856 1.1409 15 6 8.4227 -0.6625 0.0314 16 6 9.8812 -0.9396 0.2904 17 1 10.1814 -1.4535 1.1916 18 6 10.8323 -0.5361 -0.6225 19 7 10.4667 0.0902 -1.7197 20 14 12.6402 -0.8789 -0.3011 21 1 13.0042 -2.1977 -0.8785 22 1 13.4652 0.1824 -0.9322 23 1 12.8885 -0.8939 1.1629 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6054 -1.7198 1.2951 32 1 1.7516 -0.1583 2.1369 33 1 2.2560 -1.8362 3.2829 34 1 3.3711 -2.9582 5.1625 35 1 5.8189 -3.1989 5.1910 36 1 7.1703 -2.3264 3.3349 37 1 8.0565 -1.6283 1.8865 38 1 8.1200 -1.1487 -0.8961 39 1 8.2664 0.4129 -0.0543 40 1 11.1358 0.3744 -2.3618 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787621079.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:15 Heat of formation + Delta-G solvation = -88.316836 kcal Electronic energy + Delta-G solvation = -21119.887392 eV Core-core repulsion = 17898.439345 eV Total energy + Delta-G solvation = -3221.448047 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.53213 -39.97484 -38.49347 -36.30470 -36.00049 -34.40072 -32.34356 -30.90720 -29.25913 -28.08937 -27.49091 -25.48716 -24.08642 -22.92415 -21.66031 -20.95093 -19.73684 -18.70441 -17.70877 -17.38861 -17.08756 -16.65523 -16.11844 -16.04124 -15.71919 -15.51460 -15.23733 -14.81894 -14.43806 -14.17200 -13.97444 -13.87925 -13.52548 -13.25947 -13.01557 -12.92987 -12.71537 -12.70482 -12.27553 -12.21975 -12.17800 -12.05382 -11.62173 -11.55662 -11.49793 -10.81118 -10.71848 -10.10220 -9.79250 -9.17728 -8.29808 -6.47367 -0.07747 0.44589 1.42258 1.45710 1.56938 2.00960 2.23960 2.31867 2.57727 2.91172 3.04972 3.70252 3.80877 3.82717 3.92567 4.09155 4.11398 4.22124 4.40198 4.46771 4.50712 4.59606 4.62481 4.76160 4.85577 4.93317 4.98719 5.08579 5.17920 5.21090 5.23332 5.33652 5.35753 5.40285 5.46802 5.49006 5.69416 5.82279 5.83485 6.50291 6.62899 6.91748 7.21883 7.48810 8.82839 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018707 B = 0.004173 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.426748 B = 6708.686246 C = 8097.162691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.096 4.096 3 C -0.145 4.145 4 C 0.050 3.950 5 O -0.313 6.313 6 C 0.161 3.839 7 C -0.221 4.221 8 C -0.044 4.044 9 C -0.162 4.162 10 C -0.052 4.052 11 C -0.202 4.202 12 C 0.535 3.465 13 O -0.584 6.584 14 N -0.706 5.706 15 C 0.270 3.730 16 C -0.557 4.557 17 H 0.085 0.915 18 C 0.003 3.997 19 N -0.932 5.932 20 Si 0.989 3.011 21 H -0.269 1.269 22 H -0.283 1.283 23 H -0.254 1.254 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.025 0.975 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.159 0.841 34 H 0.171 0.829 35 H 0.165 0.835 36 H 0.142 0.858 37 H 0.405 0.595 38 H -0.015 1.015 39 H -0.015 1.015 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.483 -5.836 14.809 24.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.115 4.115 3 C -0.202 4.202 4 C -0.024 4.024 5 O -0.225 6.225 6 C 0.113 3.887 7 C -0.239 4.239 8 C -0.061 4.061 9 C -0.180 4.180 10 C -0.071 4.071 11 C -0.206 4.206 12 C 0.324 3.676 13 O -0.466 6.466 14 N -0.357 5.357 15 C 0.147 3.853 16 C -0.595 4.595 17 H 0.103 0.897 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.811 3.189 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.177 1.177 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.176 0.824 34 H 0.189 0.811 35 H 0.182 0.818 36 H 0.160 0.840 37 H 0.241 0.759 38 H 0.003 0.997 39 H 0.003 0.997 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.711 -5.255 13.782 23.826 hybrid contribution 1.177 0.097 -0.438 1.259 sum -17.534 -5.158 13.344 22.630 Atomic orbital electron populations 1.21720 0.90974 1.03093 1.03354 1.21142 0.97664 0.96059 0.96640 1.21775 0.99971 0.96023 1.02453 1.23259 0.77580 1.01493 1.00065 1.86385 1.22997 1.72102 1.41038 1.19391 0.90896 0.90700 0.87691 1.21537 1.01343 1.05914 0.95140 1.21624 0.94803 0.92905 0.96811 1.21400 0.94299 1.02860 0.99414 1.21455 1.00978 0.93226 0.91432 1.19514 0.91682 1.10822 0.98542 1.18847 0.82626 0.79463 0.86704 1.90725 1.72385 1.45495 1.37990 1.46101 1.05850 1.58967 1.24773 1.18530 0.90228 0.92023 0.84524 1.21602 0.90579 1.39605 1.07676 0.89712 1.26123 1.05419 0.93963 0.94163 1.70154 1.36422 1.39319 1.11148 0.85102 0.76540 0.77949 0.79281 1.19466 1.20850 1.17723 0.90962 0.91275 0.91246 0.92357 0.91734 0.91422 0.95579 0.90236 0.90255 0.82369 0.81126 0.81771 0.83999 0.75862 0.99712 0.99699 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.19 71.98 0.66 -1.30 16 2 C -0.10 -2.25 3.16 -10.80 -0.03 -2.29 16 3 C -0.14 -3.81 9.09 71.98 0.65 -3.15 16 4 C 0.05 1.19 4.12 71.98 0.30 1.49 16 5 O -0.31 -11.23 7.74 -68.80 -0.53 -11.76 16 6 C 0.16 5.24 6.70 22.84 0.15 5.39 16 7 C -0.22 -4.73 9.03 22.34 0.20 -4.53 16 8 C -0.04 -0.71 10.03 22.30 0.22 -0.49 16 9 C -0.16 -2.99 10.02 22.24 0.22 -2.76 16 10 C -0.05 -1.39 9.54 22.52 0.21 -1.18 16 11 C -0.20 -7.33 5.89 -20.01 -0.12 -7.44 16 12 C 0.53 25.63 7.76 86.70 0.67 26.31 16 13 O -0.58 -33.35 15.16 16.95 0.26 -33.09 16 14 N -0.71 -33.76 5.50 -470.00 -2.58 -36.34 16 15 C 0.27 15.94 5.43 85.63 0.46 16.40 16 16 C -0.56 -31.70 9.28 25.60 0.24 -31.47 16 17 H 0.08 4.33 7.60 -2.91 -0.02 4.31 16 18 C 0.00 0.16 5.46 84.65 0.46 0.62 16 19 N -0.93 -58.10 13.29 21.45 0.28 -57.82 16 20 Si 0.99 43.35 29.54 68.60 2.03 45.38 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 23 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 24 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.02 0.91 7.82 -2.39 -0.02 0.89 16 31 H 0.08 1.49 7.66 -2.39 -0.02 1.48 16 32 H 0.08 1.51 7.66 -2.39 -0.02 1.49 16 33 H 0.16 2.38 6.30 -2.91 -0.02 2.36 16 34 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 35 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.14 3.38 6.40 -2.91 -0.02 3.36 16 37 H 0.40 16.03 6.35 -92.71 -0.59 15.44 16 38 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 39 H -0.01 -0.99 8.14 -2.38 -0.02 -1.01 16 40 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -81.65 336.60 4.21 -77.44 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.44 Total: 20.59 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 4.31 Total: -4.40 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -2.30 Total: -94.16 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -0.28 Total: -44.85 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -81.65 4.21 -77.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787621079.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.876 kcal (2) G-P(sol) polarization free energy of solvation -81.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds