Wall clock time and date at job start Mon Mar 30 2020 01:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 C 1.52997 * 109.46974 * 120.00013 * 2 1 3 5 5 H 1.09000 * 109.47140 * 299.99606 * 4 2 1 6 6 N 1.46496 * 109.47278 * 179.97438 * 4 2 1 7 7 C 1.34784 * 119.99989 * 84.99813 * 6 4 2 8 8 O 1.21681 * 119.99704 * 0.02562 * 7 6 4 9 9 C 1.46376 * 119.99752 * 180.02562 * 7 6 4 10 10 H 1.07998 * 120.00434 * 359.97438 * 9 7 6 11 11 C 1.40051 * 119.99764 * 179.97438 * 9 7 6 12 12 N 1.30678 * 119.99921 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99801 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47144 * 90.00532 * 13 11 9 15 15 H 1.48501 * 109.46767 * 209.99980 * 13 11 9 16 16 H 1.48497 * 109.47299 * 329.99960 * 13 11 9 17 17 C 1.53002 * 109.47415 * 59.99631 * 4 2 1 18 18 H 1.09002 * 109.47070 * 300.00053 * 17 4 2 19 19 O 1.42903 * 109.46923 * 60.00217 * 17 4 2 20 20 C 1.50701 * 109.47419 * 179.97438 * 17 4 2 21 21 C 1.38242 * 119.99675 * 279.73028 * 20 17 4 22 22 C 1.38239 * 119.99559 * 179.78825 * 21 20 17 23 23 C 1.38237 * 119.99999 * 0.43356 * 22 21 20 24 24 C 1.38242 * 119.99979 * 359.82326 * 23 22 21 25 25 C 1.38230 * 119.99958 * 359.96910 * 24 23 22 26 26 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 27 27 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 28 28 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 30 30 H 1.09002 * 109.46716 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.46929 * 299.99280 * 3 2 1 32 32 H 1.08996 * 109.47050 * 60.00337 * 3 2 1 33 33 H 0.97000 * 120.00167 * 265.00274 * 6 4 2 34 34 H 0.96992 * 119.99799 * 179.97438 * 12 11 9 35 35 H 0.96700 * 114.00234 * 59.99815 * 19 17 4 36 36 H 1.07997 * 120.00052 * 359.97438 * 21 20 17 37 37 H 1.07994 * 120.00032 * 180.27754 * 22 21 20 38 38 H 1.07996 * 119.99926 * 179.83416 * 23 22 21 39 39 H 1.08000 * 119.99869 * 179.97438 * 24 23 22 40 40 H 1.07999 * 119.99817 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 7 3.5050 -0.7218 1.2490 7 6 4.1794 0.3359 1.7420 8 8 3.5714 1.2911 2.1877 9 6 5.6431 0.3355 1.7412 10 1 6.1828 -0.5124 1.3460 11 6 6.3439 1.4348 2.2530 12 7 5.6910 2.4606 2.7316 13 14 8.2119 1.4340 2.2527 14 1 8.7069 2.0248 0.9833 15 1 8.7074 2.2376 3.3990 16 1 8.7064 0.0392 2.3755 17 6 1.5300 -2.1637 1.2493 18 1 0.4399 -2.1637 1.2493 19 8 2.0063 -2.8375 0.0826 20 6 2.0328 -2.8743 2.4795 21 6 3.3220 -3.3723 2.5116 22 6 3.7847 -4.0203 3.6417 23 6 2.9552 -4.1782 4.7362 24 6 1.6642 -3.6849 4.7020 25 6 1.2030 -3.0332 3.5736 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.9896 -1.4834 0.8940 34 1 6.1763 3.2217 3.0864 35 1 2.9703 -2.8757 0.0164 36 1 3.9687 -3.2524 1.6550 37 1 4.7933 -4.4053 3.6685 38 1 3.3158 -4.6868 5.6180 39 1 1.0161 -3.8087 5.5570 40 1 0.1946 -2.6475 3.5471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790371379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:31 Heat of formation + Delta-G solvation = -73.457710 kcal Electronic energy + Delta-G solvation = -22486.329255 eV Core-core repulsion = 19265.525548 eV Total energy + Delta-G solvation = -3220.803707 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.89095 -38.02789 -36.39836 -34.57540 -32.53998 -31.92970 -31.21347 -30.55462 -27.67400 -26.66051 -25.65550 -23.31534 -22.41879 -20.85779 -20.11428 -19.09765 -17.85011 -17.01603 -15.77510 -15.72469 -15.38004 -14.88638 -14.65501 -14.10997 -13.97023 -13.83659 -13.42411 -13.17245 -12.61883 -12.56296 -12.22997 -11.94658 -11.79797 -11.62559 -11.40874 -11.19889 -11.04864 -10.95900 -10.82567 -10.70558 -10.46558 -10.28717 -10.05944 -9.96562 -9.67123 -8.85076 -8.70057 -8.47314 -7.59102 -7.43167 -6.18530 -4.63878 1.54655 1.62377 3.12541 3.19931 3.22389 3.95020 4.09124 4.54886 4.60075 4.74635 4.87359 5.01441 5.16701 5.25630 5.29437 5.48986 5.57566 5.64355 5.69287 5.82808 5.87226 5.89980 6.11605 6.19717 6.23627 6.27060 6.38393 6.54541 6.58888 6.63423 6.70091 6.74632 6.78775 7.05108 7.19104 7.39025 7.42892 7.68681 7.89291 8.09405 8.30597 9.02660 9.50741 10.60093 10.79783 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013853 B = 0.007257 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.809381 B = 3857.192180 C = 5177.555515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.132 4.132 4 C 0.136 3.864 5 H 0.083 0.917 6 N -0.758 5.758 7 C 0.561 3.439 8 O -0.570 6.570 9 C -0.546 4.546 10 H 0.064 0.936 11 C 0.090 3.910 12 N -0.766 5.766 13 Si 0.903 3.097 14 H -0.273 1.273 15 H -0.280 1.280 16 H -0.266 1.266 17 C 0.137 3.863 18 H 0.111 0.889 19 O -0.553 6.553 20 C -0.103 4.103 21 C -0.094 4.094 22 C -0.115 4.115 23 C -0.125 4.125 24 C -0.122 4.122 25 C -0.113 4.113 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.027 0.973 32 H 0.058 0.942 33 H 0.370 0.630 34 H 0.267 0.733 35 H 0.371 0.629 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 -11.006 -0.832 12.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.189 4.189 4 C 0.029 3.971 5 H 0.101 0.899 6 N -0.414 5.414 7 C 0.365 3.635 8 O -0.452 6.452 9 C -0.583 4.583 10 H 0.082 0.918 11 C -0.130 4.130 12 N -0.395 5.395 13 Si 0.728 3.272 14 H -0.198 1.198 15 H -0.205 1.205 16 H -0.190 1.190 17 C 0.078 3.922 18 H 0.129 0.871 19 O -0.359 6.359 20 C -0.103 4.103 21 C -0.113 4.113 22 C -0.133 4.133 23 C -0.143 4.143 24 C -0.140 4.140 25 C -0.131 4.131 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.203 0.797 34 H 0.078 0.922 35 H 0.219 0.781 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.307 -10.159 -0.510 12.524 hybrid contribution 1.851 -0.209 0.085 1.865 sum -5.455 -10.368 -0.425 11.723 Atomic orbital electron populations 1.21884 0.96242 1.00883 1.01359 1.21424 0.94398 0.97563 0.98388 1.21812 1.03018 0.94271 0.99789 1.21213 0.84425 0.92937 0.98517 0.89880 1.46194 1.03357 1.22385 1.69476 1.18050 0.88052 0.80406 0.76984 1.90610 1.69859 1.34599 1.50153 1.20852 0.89883 1.03996 1.43581 0.91780 1.25655 0.99542 0.94709 0.93109 1.70009 1.36244 1.04513 1.28730 0.86447 0.83597 0.78913 0.78235 1.19807 1.20541 1.19018 1.21304 0.98952 0.90332 0.81642 0.87118 1.86557 1.26695 1.79268 1.43369 1.20489 0.94758 0.98320 0.96748 1.20822 0.94722 0.97303 0.98407 1.21087 0.99485 0.99219 0.93510 1.21088 0.94269 1.00617 0.98325 1.21044 0.96141 0.98978 0.97849 1.20915 0.99522 0.99351 0.93347 0.92959 0.93161 0.93000 0.91548 0.91076 0.95358 0.92252 0.79720 0.92216 0.78088 0.86473 0.86142 0.86473 0.86395 0.86301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.84 37.16 0.33 -1.78 16 2 C -0.10 -1.71 2.55 -90.62 -0.23 -1.94 16 3 C -0.13 -2.72 7.71 37.16 0.29 -2.43 16 4 C 0.14 2.48 1.66 -67.93 -0.11 2.37 16 5 H 0.08 1.77 7.58 -51.93 -0.39 1.38 16 6 N -0.76 -15.62 4.07 -55.22 -0.22 -15.84 16 7 C 0.56 14.90 6.10 -12.98 -0.08 14.82 16 8 O -0.57 -17.14 12.14 5.21 0.06 -17.08 16 9 C -0.55 -14.83 9.54 -35.63 -0.34 -15.17 16 10 H 0.06 1.60 7.85 -52.49 -0.41 1.19 16 11 C 0.09 2.44 5.50 -17.36 -0.10 2.35 16 12 N -0.77 -22.44 11.83 55.55 0.66 -21.78 16 13 Si 0.90 19.91 29.56 -169.99 -5.02 14.88 16 14 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 17 C 0.14 2.06 2.73 -27.88 -0.08 1.98 16 18 H 0.11 1.52 6.29 -51.93 -0.33 1.20 16 19 O -0.55 -8.00 12.51 -35.23 -0.44 -8.45 16 20 C -0.10 -1.57 4.88 -104.62 -0.51 -2.09 16 21 C -0.09 -1.42 8.32 -39.58 -0.33 -1.75 16 22 C -0.11 -1.63 10.05 -39.58 -0.40 -2.03 16 23 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 24 C -0.12 -1.63 10.05 -39.58 -0.40 -2.02 16 25 C -0.11 -1.62 9.67 -39.59 -0.38 -2.00 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.67 6.43 -51.93 -0.33 0.34 16 29 H 0.07 1.15 7.68 -51.93 -0.40 0.75 16 30 H 0.07 1.73 5.78 -51.93 -0.30 1.43 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 1.34 7.53 -51.93 -0.39 0.95 16 33 H 0.37 6.72 5.45 -40.82 -0.22 6.50 16 34 H 0.27 7.17 8.29 -40.82 -0.34 6.84 16 35 H 0.37 4.71 6.11 45.56 0.28 4.99 16 36 H 0.12 1.62 5.50 -52.49 -0.29 1.33 16 37 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.12 1.46 8.04 -52.49 -0.42 1.03 16 LS Contribution 320.19 15.07 4.83 4.83 Total: -1.00 -32.57 320.19 -7.76 -40.33 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -4.88 Total: 14.87 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -2.74 Total: -11.76 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.43 Total: -37.63 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.38 Total: -25.52 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.57 -7.76 -40.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790371379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.125 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds