Wall clock time and date at job start Mon Mar 30 2020 01:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 C 1.52997 * 109.46974 * 120.00013 * 2 1 3 5 5 H 1.09000 * 109.47140 * 299.99606 * 4 2 1 6 6 N 1.46496 * 109.47278 * 179.97438 * 4 2 1 7 7 C 1.34784 * 119.99989 * 84.99813 * 6 4 2 8 8 O 1.21681 * 119.99704 * 0.02562 * 7 6 4 9 9 C 1.46376 * 119.99752 * 180.02562 * 7 6 4 10 10 H 1.07998 * 120.00434 * 359.97438 * 9 7 6 11 11 C 1.40051 * 119.99764 * 179.97438 * 9 7 6 12 12 N 1.30678 * 119.99921 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99801 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47144 * 90.00532 * 13 11 9 15 15 H 1.48501 * 109.46767 * 209.99980 * 13 11 9 16 16 H 1.48497 * 109.47299 * 329.99960 * 13 11 9 17 17 C 1.53002 * 109.47415 * 59.99631 * 4 2 1 18 18 H 1.09002 * 109.47070 * 300.00053 * 17 4 2 19 19 O 1.42903 * 109.46923 * 60.00217 * 17 4 2 20 20 C 1.50701 * 109.47419 * 179.97438 * 17 4 2 21 21 C 1.38242 * 119.99675 * 279.73028 * 20 17 4 22 22 C 1.38239 * 119.99559 * 179.78825 * 21 20 17 23 23 C 1.38237 * 119.99999 * 0.43356 * 22 21 20 24 24 C 1.38242 * 119.99979 * 359.82326 * 23 22 21 25 25 C 1.38230 * 119.99958 * 359.96910 * 24 23 22 26 26 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 27 27 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 28 28 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 30 30 H 1.09002 * 109.46716 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.46929 * 299.99280 * 3 2 1 32 32 H 1.08996 * 109.47050 * 60.00337 * 3 2 1 33 33 H 0.97000 * 120.00167 * 265.00274 * 6 4 2 34 34 H 0.96992 * 119.99799 * 179.97438 * 12 11 9 35 35 H 0.96700 * 114.00234 * 59.99815 * 19 17 4 36 36 H 1.07997 * 120.00052 * 359.97438 * 21 20 17 37 37 H 1.07994 * 120.00032 * 180.27754 * 22 21 20 38 38 H 1.07996 * 119.99926 * 179.83416 * 23 22 21 39 39 H 1.08000 * 119.99869 * 179.97438 * 24 23 22 40 40 H 1.07999 * 119.99817 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 7 3.5050 -0.7218 1.2490 7 6 4.1794 0.3359 1.7420 8 8 3.5714 1.2911 2.1877 9 6 5.6431 0.3355 1.7412 10 1 6.1828 -0.5124 1.3460 11 6 6.3439 1.4348 2.2530 12 7 5.6910 2.4606 2.7316 13 14 8.2119 1.4340 2.2527 14 1 8.7069 2.0248 0.9833 15 1 8.7074 2.2376 3.3990 16 1 8.7064 0.0392 2.3755 17 6 1.5300 -2.1637 1.2493 18 1 0.4399 -2.1637 1.2493 19 8 2.0063 -2.8375 0.0826 20 6 2.0328 -2.8743 2.4795 21 6 3.3220 -3.3723 2.5116 22 6 3.7847 -4.0203 3.6417 23 6 2.9552 -4.1782 4.7362 24 6 1.6642 -3.6849 4.7020 25 6 1.2030 -3.0332 3.5736 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.9896 -1.4834 0.8940 34 1 6.1763 3.2217 3.0864 35 1 2.9703 -2.8757 0.0164 36 1 3.9687 -3.2524 1.6550 37 1 4.7933 -4.4053 3.6685 38 1 3.3158 -4.6868 5.6180 39 1 1.0161 -3.8087 5.5570 40 1 0.1946 -2.6475 3.5471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790371379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:31 Heat of formation + Delta-G solvation = -95.735597 kcal Electronic energy + Delta-G solvation = -22487.295297 eV Core-core repulsion = 19265.525548 eV Total energy + Delta-G solvation = -3221.769749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.19441 -39.46803 -37.99266 -36.04629 -34.55807 -33.63100 -32.44561 -31.65847 -29.23129 -28.33517 -27.26845 -24.71187 -23.51156 -22.11517 -21.82880 -20.68844 -19.48484 -18.37721 -17.51416 -17.11941 -16.77944 -16.31468 -16.05544 -15.66236 -15.52716 -15.11024 -14.67855 -14.48509 -14.22719 -13.90394 -13.54358 -13.48272 -13.39095 -13.02431 -12.92282 -12.76515 -12.72005 -12.53730 -12.27921 -12.18816 -11.99696 -11.90272 -11.61907 -11.44010 -10.98129 -10.86998 -9.79264 -9.70042 -9.60124 -9.25199 -8.23171 -6.77718 0.45036 0.54435 1.39253 1.40028 1.54003 2.24737 2.55621 2.83901 3.08324 3.48840 3.61244 3.72897 3.91833 3.98882 4.15446 4.20915 4.22038 4.29856 4.44100 4.52545 4.64215 4.69408 4.81736 4.88469 4.94898 5.06212 5.10484 5.13905 5.17240 5.28249 5.35922 5.51019 5.57581 5.63542 5.64158 5.67055 5.95300 6.14215 6.26634 6.34408 6.62124 6.93520 7.61613 8.58304 8.77433 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013853 B = 0.007257 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.809381 B = 3857.192180 C = 5177.555515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 C -0.121 4.121 4 C 0.139 3.861 5 H 0.048 0.952 6 N -0.743 5.743 7 C 0.553 3.447 8 O -0.614 6.614 9 C -0.574 4.574 10 H 0.081 0.919 11 C 0.033 3.967 12 N -0.819 5.819 13 Si 0.986 3.014 14 H -0.264 1.264 15 H -0.277 1.277 16 H -0.250 1.250 17 C 0.154 3.846 18 H 0.130 0.870 19 O -0.552 6.552 20 C -0.124 4.124 21 C -0.114 4.114 22 C -0.131 4.131 23 C -0.130 4.130 24 C -0.129 4.129 25 C -0.127 4.127 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.027 0.973 31 H 0.049 0.951 32 H 0.029 0.971 33 H 0.384 0.616 34 H 0.270 0.730 35 H 0.378 0.622 36 H 0.122 0.878 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.099 -12.955 -1.197 14.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 C -0.179 4.179 4 C 0.032 3.968 5 H 0.067 0.933 6 N -0.398 5.398 7 C 0.356 3.644 8 O -0.499 6.499 9 C -0.611 4.611 10 H 0.099 0.901 11 C -0.182 4.182 12 N -0.449 5.449 13 Si 0.807 3.193 14 H -0.189 1.189 15 H -0.202 1.202 16 H -0.174 1.174 17 C 0.094 3.906 18 H 0.147 0.853 19 O -0.359 6.359 20 C -0.125 4.125 21 C -0.132 4.132 22 C -0.149 4.149 23 C -0.148 4.148 24 C -0.146 4.146 25 C -0.145 4.145 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.219 0.781 34 H 0.080 0.920 35 H 0.227 0.773 36 H 0.140 0.860 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.191 -12.167 -0.904 14.162 hybrid contribution 1.759 0.358 0.208 1.807 sum -5.432 -11.809 -0.696 13.017 Atomic orbital electron populations 1.21824 0.93343 1.02533 1.01968 1.21383 0.96791 0.95056 0.98063 1.21655 1.00085 0.96798 0.99314 1.21283 0.82616 0.95364 0.97488 0.93336 1.45780 1.04660 1.21277 1.68095 1.18245 0.88495 0.80927 0.76727 1.90576 1.70724 1.36578 1.52046 1.21382 0.90759 1.04915 1.44004 0.90112 1.26795 1.05467 0.93890 0.92018 1.70180 1.38880 1.05593 1.30261 0.85185 0.76067 0.79643 0.78448 1.18910 1.20181 1.17364 1.21128 0.99688 0.87733 0.82024 0.85282 1.86546 1.27472 1.78842 1.42998 1.20622 0.95316 0.99250 0.97294 1.21037 0.94996 0.98006 0.99187 1.21405 1.00539 0.99298 0.93616 1.21477 0.94257 1.00181 0.98897 1.21429 0.96635 0.98205 0.98367 1.21254 1.00400 0.99436 0.93407 0.93338 0.91660 0.90781 0.90730 0.95333 0.93197 0.95195 0.78134 0.91974 0.77263 0.86016 0.84632 0.83993 0.83819 0.84627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 8.84 71.98 0.64 -3.12 16 2 C -0.09 -3.20 2.55 -10.79 -0.03 -3.23 16 3 C -0.12 -5.15 7.71 71.98 0.56 -4.60 16 4 C 0.14 5.09 1.66 44.99 0.07 5.17 16 5 H 0.05 2.15 7.58 -2.39 -0.02 2.13 16 6 N -0.74 -31.12 4.07 -446.83 -1.82 -32.94 16 7 C 0.55 30.37 6.10 86.36 0.53 30.90 16 8 O -0.61 -38.82 12.14 -4.29 -0.05 -38.87 16 9 C -0.57 -31.67 9.54 24.83 0.24 -31.43 16 10 H 0.08 4.02 7.85 -2.91 -0.02 4.00 16 11 C 0.03 1.84 5.50 85.30 0.47 2.31 16 12 N -0.82 -49.68 11.83 21.84 0.26 -49.42 16 13 Si 0.99 41.00 29.56 68.60 2.03 43.03 16 14 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 15 H -0.28 -11.24 7.11 99.48 0.71 -10.54 16 16 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 17 C 0.15 4.41 2.73 29.85 0.08 4.49 16 18 H 0.13 3.24 6.29 -2.39 -0.02 3.22 16 19 O -0.55 -14.87 12.51 -148.98 -1.86 -16.73 16 20 C -0.12 -3.69 4.88 -19.86 -0.10 -3.79 16 21 C -0.11 -3.35 8.32 22.27 0.19 -3.17 16 22 C -0.13 -3.55 10.05 22.27 0.22 -3.32 16 23 C -0.13 -3.23 10.05 22.27 0.22 -3.01 16 24 C -0.13 -3.18 10.05 22.27 0.22 -2.96 16 25 C -0.13 -3.45 9.67 22.27 0.22 -3.24 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.69 6.43 -2.39 -0.02 1.67 16 29 H 0.07 2.47 7.68 -2.39 -0.02 2.45 16 30 H 0.03 1.43 5.78 -2.39 -0.01 1.41 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.03 1.40 7.53 -2.39 -0.02 1.39 16 33 H 0.38 13.91 5.45 -92.71 -0.50 13.40 16 34 H 0.27 15.04 8.29 -92.71 -0.77 14.27 16 35 H 0.38 8.99 6.11 -74.06 -0.45 8.54 16 36 H 0.12 3.27 5.50 -2.91 -0.02 3.26 16 37 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 38 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 39 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 40 H 0.14 3.08 8.04 -2.91 -0.02 3.06 16 Total: -1.00 -73.49 320.19 2.19 -71.31 By element: Atomic # 1 Polarization: 42.52 SS G_CDS: 0.10 Total: 42.62 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 3.53 Total: -18.99 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -1.56 Total: -82.36 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: -1.92 Total: -55.61 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -73.49 2.19 -71.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790371379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.430 kcal (2) G-P(sol) polarization free energy of solvation -73.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds