Wall clock time and date at job start Mon Mar 30 2020 01:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46733 * 2 1 4 4 C 1.53002 * 109.47024 * 119.99651 * 2 1 3 5 5 H 1.08995 * 109.47399 * 295.84169 * 4 2 1 6 6 N 1.46504 * 109.46772 * 55.84600 * 4 2 1 7 7 C 1.34779 * 119.99397 * 274.99300 * 6 4 2 8 8 O 1.21681 * 120.00258 * 0.02562 * 7 6 4 9 9 C 1.46378 * 119.99466 * 180.02562 * 7 6 4 10 10 H 1.08001 * 120.00412 * 0.02562 * 9 7 6 11 11 C 1.40048 * 120.00001 * 179.97438 * 9 7 6 12 12 N 1.30673 * 119.99597 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00338 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46870 * 59.99853 * 13 11 9 15 15 H 1.48493 * 109.47202 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46945 * 300.00597 * 13 11 9 17 17 C 1.53001 * 109.46994 * 175.83773 * 4 2 1 18 18 H 1.09011 * 109.46733 * 57.37593 * 17 4 2 19 19 O 1.42898 * 109.47169 * 177.37201 * 17 4 2 20 20 C 1.50700 * 109.47285 * 297.37939 * 17 4 2 21 21 C 1.38229 * 120.00224 * 93.29377 * 20 17 4 22 22 C 1.38236 * 120.00145 * 179.97438 * 21 20 17 23 23 C 1.38238 * 119.99616 * 359.95525 * 22 21 20 24 24 C 1.38232 * 120.00308 * 359.97438 * 23 22 21 25 25 C 1.38235 * 119.99942 * 0.06785 * 24 23 22 26 26 H 1.09003 * 109.47132 * 299.99938 * 1 2 3 27 27 H 1.08997 * 109.47324 * 59.99967 * 1 2 3 28 28 H 1.09000 * 109.47118 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47132 * 240.00062 * 2 1 3 30 30 H 1.09004 * 109.47044 * 179.20601 * 3 2 1 31 31 H 1.09002 * 109.47497 * 299.20619 * 3 2 1 32 32 H 1.08999 * 109.47219 * 59.20778 * 3 2 1 33 33 H 0.96995 * 120.00309 * 94.99759 * 6 4 2 34 34 H 0.97009 * 119.99683 * 179.97438 * 12 11 9 35 35 H 0.96701 * 113.99504 * 60.00869 * 19 17 4 36 36 H 1.08006 * 120.00112 * 359.97362 * 21 20 17 37 37 H 1.08000 * 120.00381 * 179.97438 * 22 21 20 38 38 H 1.08004 * 119.99746 * 179.72012 * 23 22 21 39 39 H 1.07999 * 120.00468 * 179.97438 * 24 23 22 40 40 H 1.08000 * 120.00249 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7388 -0.1661 2.1377 6 7 1.4716 -2.0705 1.3004 7 6 0.2531 -2.2683 1.8413 8 8 -0.3751 -1.3262 2.2868 9 6 -0.3146 -3.6165 1.8929 10 1 0.2431 -4.4528 1.4978 11 6 -1.5805 -3.8223 2.4554 12 7 -2.2551 -2.8105 2.9338 13 14 -2.3048 -5.5429 2.5219 14 1 -1.4119 -6.4254 3.3152 15 1 -3.6448 -5.4916 3.1595 16 1 -2.4333 -6.0794 1.1431 17 6 3.5664 -0.8125 1.1981 18 1 3.9876 0.1893 1.1129 19 8 4.0470 -1.4313 2.3931 20 6 3.9807 -1.6346 0.0049 21 6 4.2736 -1.0132 -1.1946 22 6 4.6541 -1.7674 -2.2888 23 6 4.7427 -3.1428 -2.1832 24 6 4.4513 -3.7641 -0.9832 25 6 4.0699 -3.0101 0.1108 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1298 1.4426 0.0142 31 1 1.6882 1.9523 -0.8970 32 1 1.6650 1.9604 0.8828 33 1 1.9722 -2.8214 0.9450 34 1 -3.1321 -2.9529 3.3231 35 1 3.7122 -2.3275 2.5339 36 1 4.2050 0.0615 -1.2769 37 1 4.8825 -1.2819 -3.2262 38 1 5.0356 -3.7324 -3.0394 39 1 4.5200 -4.8388 -0.9008 40 1 3.8417 -3.4955 1.0482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790371382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:34 Heat of formation + Delta-G solvation = -73.529680 kcal Electronic energy + Delta-G solvation = -22576.444652 eV Core-core repulsion = 19355.637825 eV Total energy + Delta-G solvation = -3220.806828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.10211 -37.92730 -36.34221 -34.89319 -32.54315 -31.82110 -31.21285 -30.65208 -27.73011 -26.67341 -25.69169 -23.25417 -22.54646 -21.15972 -20.05196 -19.09660 -17.75260 -17.03243 -15.82833 -15.71870 -15.38125 -15.03403 -14.77194 -14.27469 -14.08012 -13.79644 -13.28215 -13.10919 -12.73280 -12.49867 -12.37147 -11.94581 -11.84566 -11.70167 -11.52630 -11.31829 -11.09182 -10.99797 -10.92119 -10.49814 -10.46043 -10.30896 -10.18285 -10.00978 -9.61267 -8.84582 -8.82849 -8.59882 -7.59155 -7.43177 -6.18304 -4.64378 1.41485 1.46540 3.14515 3.20031 3.21259 3.83380 4.09503 4.56005 4.65085 4.70107 4.86003 4.92607 5.04167 5.15836 5.20275 5.42331 5.49978 5.56689 5.58520 5.79573 5.80299 5.87763 6.00697 6.09560 6.18085 6.19109 6.38596 6.48396 6.51493 6.56540 6.62586 6.66056 6.72393 7.02627 7.05667 7.38060 7.42748 7.80550 7.91598 8.09427 8.31154 9.02443 9.52502 10.60145 10.79690 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017479 B = 0.006270 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.528099 B = 4464.446683 C = 5227.638227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.104 4.104 3 C -0.147 4.147 4 C 0.135 3.865 5 H 0.088 0.912 6 N -0.763 5.763 7 C 0.558 3.442 8 O -0.570 6.570 9 C -0.548 4.548 10 H 0.064 0.936 11 C 0.090 3.910 12 N -0.766 5.766 13 Si 0.904 3.096 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.269 1.269 17 C 0.135 3.865 18 H 0.112 0.888 19 O -0.555 6.555 20 C -0.099 4.099 21 C -0.111 4.111 22 C -0.120 4.120 23 C -0.127 4.127 24 C -0.113 4.113 25 C -0.115 4.115 26 H 0.064 0.936 27 H 0.027 0.973 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.376 0.624 34 H 0.268 0.732 35 H 0.377 0.623 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.228 1.160 -8.518 14.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.125 4.125 3 C -0.205 4.205 4 C 0.028 3.972 5 H 0.106 0.894 6 N -0.420 5.420 7 C 0.362 3.638 8 O -0.452 6.452 9 C -0.585 4.585 10 H 0.082 0.918 11 C -0.130 4.130 12 N -0.395 5.395 13 Si 0.729 3.271 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.194 1.194 17 C 0.076 3.924 18 H 0.129 0.871 19 O -0.361 6.361 20 C -0.100 4.100 21 C -0.129 4.129 22 C -0.138 4.138 23 C -0.145 4.145 24 C -0.131 4.131 25 C -0.133 4.133 26 H 0.083 0.917 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.210 0.790 34 H 0.079 0.921 35 H 0.226 0.774 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.880 2.492 -8.003 14.539 hybrid contribution -0.491 -1.815 -0.410 1.925 sum 11.389 0.677 -8.413 14.175 Atomic orbital electron populations 1.21801 0.93600 1.03307 1.00093 1.21546 0.97692 0.94859 0.98355 1.21919 0.99860 0.96969 1.01772 1.21242 0.89887 0.87536 0.98514 0.89396 1.46362 1.21666 1.06113 1.67874 1.18076 0.78473 0.90197 0.77008 1.90603 1.59944 1.43892 1.50802 1.20838 1.02702 0.92539 1.42429 0.91813 1.25651 0.96540 0.97583 0.93199 1.70002 1.10638 1.30881 1.27939 0.86499 0.78400 0.83206 0.79030 1.19332 1.20588 1.19398 1.21295 0.93979 0.95637 0.81522 0.87077 1.86527 1.73100 1.34408 1.42096 1.20576 0.98438 0.94668 0.96309 1.20966 0.99436 0.99911 0.92557 1.21089 1.00157 0.94159 0.98372 1.21104 1.00931 0.94793 0.97631 1.21102 0.99147 0.99823 0.93035 1.20936 0.99911 0.93392 0.99064 0.91688 0.95392 0.91369 0.91724 0.93339 0.93045 0.92475 0.79013 0.92124 0.77415 0.86025 0.86310 0.86393 0.86023 0.85949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 7.68 37.16 0.29 -2.42 16 2 C -0.10 -1.79 2.36 -90.62 -0.21 -2.01 16 3 C -0.15 -2.05 8.92 37.16 0.33 -1.72 16 4 C 0.14 2.50 1.80 -67.93 -0.12 2.38 16 5 H 0.09 1.91 7.58 -51.93 -0.39 1.51 16 6 N -0.76 -16.11 4.32 -55.21 -0.24 -16.34 16 7 C 0.56 14.99 5.96 -12.98 -0.08 14.91 16 8 O -0.57 -17.20 12.14 5.21 0.06 -17.14 16 9 C -0.55 -15.01 9.54 -35.63 -0.34 -15.35 16 10 H 0.06 1.61 7.85 -52.49 -0.41 1.20 16 11 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 12 N -0.77 -22.44 11.83 55.55 0.66 -21.79 16 13 Si 0.90 19.93 29.56 -169.99 -5.02 14.90 16 14 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 15 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 17 C 0.14 2.07 2.96 -27.88 -0.08 1.99 16 18 H 0.11 1.55 6.32 -51.92 -0.33 1.22 16 19 O -0.56 -9.04 13.11 -35.23 -0.46 -9.50 16 20 C -0.10 -1.40 4.16 -104.62 -0.44 -1.83 16 21 C -0.11 -1.40 8.07 -39.59 -0.32 -1.72 16 22 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 23 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 24 C -0.11 -1.38 10.05 -39.58 -0.40 -1.78 16 25 C -0.11 -1.57 7.51 -39.58 -0.30 -1.86 16 26 H 0.06 1.49 7.24 -51.93 -0.38 1.12 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 1.66 5.89 -51.93 -0.31 1.36 16 29 H 0.06 1.09 6.11 -51.93 -0.32 0.77 16 30 H 0.05 0.57 5.61 -51.93 -0.29 0.28 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.38 7.20 5.55 -40.82 -0.23 6.98 16 34 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 35 H 0.38 5.69 6.90 45.56 0.31 6.01 16 36 H 0.12 1.35 7.18 -52.48 -0.38 0.97 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 39 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.12 1.59 5.98 -52.49 -0.31 1.28 16 LS Contribution 315.98 15.07 4.76 4.76 Total: -1.00 -32.31 315.98 -7.50 -39.81 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -4.70 Total: 15.96 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -2.56 Total: -10.66 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.42 Total: -38.13 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.40 Total: -26.64 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.31 -7.50 -39.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790371382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.716 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds