Wall clock time and date at job start Mon Mar 30 2020 01:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46733 * 2 1 4 4 C 1.53002 * 109.47024 * 119.99651 * 2 1 3 5 5 H 1.08995 * 109.47399 * 295.84169 * 4 2 1 6 6 N 1.46504 * 109.46772 * 55.84600 * 4 2 1 7 7 C 1.34779 * 119.99397 * 274.99300 * 6 4 2 8 8 O 1.21681 * 120.00258 * 0.02562 * 7 6 4 9 9 C 1.46378 * 119.99466 * 180.02562 * 7 6 4 10 10 H 1.08001 * 120.00412 * 0.02562 * 9 7 6 11 11 C 1.40048 * 120.00001 * 179.97438 * 9 7 6 12 12 N 1.30673 * 119.99597 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00338 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46870 * 59.99853 * 13 11 9 15 15 H 1.48493 * 109.47202 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46945 * 300.00597 * 13 11 9 17 17 C 1.53001 * 109.46994 * 175.83773 * 4 2 1 18 18 H 1.09011 * 109.46733 * 57.37593 * 17 4 2 19 19 O 1.42898 * 109.47169 * 177.37201 * 17 4 2 20 20 C 1.50700 * 109.47285 * 297.37939 * 17 4 2 21 21 C 1.38229 * 120.00224 * 93.29377 * 20 17 4 22 22 C 1.38236 * 120.00145 * 179.97438 * 21 20 17 23 23 C 1.38238 * 119.99616 * 359.95525 * 22 21 20 24 24 C 1.38232 * 120.00308 * 359.97438 * 23 22 21 25 25 C 1.38235 * 119.99942 * 0.06785 * 24 23 22 26 26 H 1.09003 * 109.47132 * 299.99938 * 1 2 3 27 27 H 1.08997 * 109.47324 * 59.99967 * 1 2 3 28 28 H 1.09000 * 109.47118 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47132 * 240.00062 * 2 1 3 30 30 H 1.09004 * 109.47044 * 179.20601 * 3 2 1 31 31 H 1.09002 * 109.47497 * 299.20619 * 3 2 1 32 32 H 1.08999 * 109.47219 * 59.20778 * 3 2 1 33 33 H 0.96995 * 120.00309 * 94.99759 * 6 4 2 34 34 H 0.97009 * 119.99683 * 179.97438 * 12 11 9 35 35 H 0.96701 * 113.99504 * 60.00869 * 19 17 4 36 36 H 1.08006 * 120.00112 * 359.97362 * 21 20 17 37 37 H 1.08000 * 120.00381 * 179.97438 * 22 21 20 38 38 H 1.08004 * 119.99746 * 179.72012 * 23 22 21 39 39 H 1.07999 * 120.00468 * 179.97438 * 24 23 22 40 40 H 1.08000 * 120.00249 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7388 -0.1661 2.1377 6 7 1.4716 -2.0705 1.3004 7 6 0.2531 -2.2683 1.8413 8 8 -0.3751 -1.3262 2.2868 9 6 -0.3146 -3.6165 1.8929 10 1 0.2431 -4.4528 1.4978 11 6 -1.5805 -3.8223 2.4554 12 7 -2.2551 -2.8105 2.9338 13 14 -2.3048 -5.5429 2.5219 14 1 -1.4119 -6.4254 3.3152 15 1 -3.6448 -5.4916 3.1595 16 1 -2.4333 -6.0794 1.1431 17 6 3.5664 -0.8125 1.1981 18 1 3.9876 0.1893 1.1129 19 8 4.0470 -1.4313 2.3931 20 6 3.9807 -1.6346 0.0049 21 6 4.2736 -1.0132 -1.1946 22 6 4.6541 -1.7674 -2.2888 23 6 4.7427 -3.1428 -2.1832 24 6 4.4513 -3.7641 -0.9832 25 6 4.0699 -3.0101 0.1108 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1298 1.4426 0.0142 31 1 1.6882 1.9523 -0.8970 32 1 1.6650 1.9604 0.8828 33 1 1.9722 -2.8214 0.9450 34 1 -3.1321 -2.9529 3.3231 35 1 3.7122 -2.3275 2.5339 36 1 4.2050 0.0615 -1.2769 37 1 4.8825 -1.2819 -3.2262 38 1 5.0356 -3.7324 -3.0394 39 1 4.5200 -4.8388 -0.9008 40 1 3.8417 -3.4955 1.0482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790371382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:34 Heat of formation + Delta-G solvation = -96.363057 kcal Electronic energy + Delta-G solvation = -22577.434782 eV Core-core repulsion = 19355.637825 eV Total energy + Delta-G solvation = -3221.796957 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.35216 -39.39146 -37.87341 -36.41220 -34.59015 -33.58346 -32.31473 -31.64437 -29.28697 -28.32736 -27.31741 -24.61783 -23.50886 -22.30305 -21.87921 -20.60236 -19.39345 -18.44543 -17.46868 -17.10049 -16.75639 -16.41437 -16.17955 -15.78085 -15.49569 -15.05066 -14.63266 -14.46068 -14.13299 -13.77831 -13.70293 -13.50654 -13.35301 -13.16648 -12.92233 -12.79170 -12.67817 -12.56515 -12.52312 -12.09542 -11.94171 -11.91816 -11.63949 -11.48401 -10.94576 -10.88021 -9.79600 -9.68733 -9.63706 -9.26684 -8.24513 -6.80613 0.45110 0.53695 1.38765 1.41658 1.52481 2.24484 2.53106 2.86776 3.12004 3.38637 3.65856 3.72415 3.79690 4.00483 4.13237 4.16417 4.23168 4.32631 4.47269 4.47690 4.66008 4.70685 4.82366 4.83818 4.93419 5.03864 5.11048 5.14335 5.18475 5.24098 5.33622 5.48612 5.60234 5.61961 5.66251 5.67738 5.93379 6.14574 6.26123 6.34707 6.55810 6.91271 7.60369 8.56362 8.74755 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017479 B = 0.006270 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.528099 B = 4464.446683 C = 5227.638227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.095 4.095 3 C -0.142 4.142 4 C 0.135 3.865 5 H 0.048 0.952 6 N -0.749 5.749 7 C 0.548 3.452 8 O -0.613 6.613 9 C -0.578 4.578 10 H 0.079 0.921 11 C 0.034 3.966 12 N -0.819 5.819 13 Si 0.988 3.012 14 H -0.255 1.255 15 H -0.276 1.276 16 H -0.258 1.258 17 C 0.146 3.854 18 H 0.130 0.870 19 O -0.566 6.566 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.126 4.126 24 C -0.122 4.122 25 C -0.134 4.134 26 H 0.030 0.970 27 H 0.051 0.949 28 H 0.024 0.976 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.388 0.612 34 H 0.272 0.728 35 H 0.379 0.621 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.975 0.219 -10.793 17.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.115 4.115 3 C -0.199 4.199 4 C 0.029 3.971 5 H 0.066 0.934 6 N -0.405 5.405 7 C 0.352 3.648 8 O -0.499 6.499 9 C -0.614 4.614 10 H 0.098 0.902 11 C -0.181 4.181 12 N -0.448 5.448 13 Si 0.808 3.192 14 H -0.179 1.179 15 H -0.201 1.201 16 H -0.182 1.182 17 C 0.087 3.913 18 H 0.148 0.852 19 O -0.373 6.373 20 C -0.118 4.118 21 C -0.135 4.135 22 C -0.139 4.139 23 C -0.144 4.144 24 C -0.140 4.140 25 C -0.153 4.153 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.223 0.777 34 H 0.082 0.918 35 H 0.228 0.772 36 H 0.157 0.843 37 H 0.165 0.835 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 13.685 1.547 -10.303 17.199 hybrid contribution -0.964 -1.497 0.243 1.797 sum 12.721 0.050 -10.060 16.218 Atomic orbital electron populations 1.21652 0.96509 1.00205 0.99523 1.21461 0.94899 0.97317 0.97838 1.21877 1.01637 0.94158 1.02261 1.21339 0.92525 0.85591 0.97687 0.93372 1.45991 1.20107 1.07885 1.66531 1.18308 0.79746 0.89899 0.76851 1.90569 1.61623 1.45001 1.52673 1.21369 1.03696 0.93354 1.43018 0.90250 1.26809 0.96708 1.02553 0.92036 1.70174 1.11305 1.34023 1.29304 0.85213 0.77532 0.76814 0.79630 1.17905 1.20069 1.18183 1.21231 0.91041 0.96995 0.82055 0.85236 1.86503 1.73090 1.34709 1.42956 1.20462 1.00307 0.94716 0.96305 1.21218 0.99066 1.01024 0.92150 1.21466 0.99022 0.94304 0.99085 1.21497 0.99641 0.95274 0.98015 1.21375 0.98855 1.00773 0.93003 1.21058 1.00907 0.93649 0.99644 0.95070 0.92981 0.95684 0.90398 0.90437 0.91026 0.93649 0.77673 0.91839 0.77152 0.84301 0.83521 0.83783 0.84422 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 7.68 71.98 0.55 -4.65 16 2 C -0.10 -3.24 2.36 -10.79 -0.03 -3.26 16 3 C -0.14 -3.67 8.92 71.98 0.64 -3.03 16 4 C 0.13 5.11 1.80 44.99 0.08 5.19 16 5 H 0.05 2.21 7.58 -2.39 -0.02 2.20 16 6 N -0.75 -32.67 4.32 -446.82 -1.93 -34.60 16 7 C 0.55 30.83 5.96 86.36 0.51 31.34 16 8 O -0.61 -39.32 12.14 -4.29 -0.05 -39.38 16 9 C -0.58 -32.46 9.54 24.83 0.24 -32.23 16 10 H 0.08 4.04 7.85 -2.91 -0.02 4.02 16 11 C 0.03 1.90 5.50 85.30 0.47 2.37 16 12 N -0.82 -49.92 11.83 21.84 0.26 -49.66 16 13 Si 0.99 41.20 29.56 68.60 2.03 43.23 16 14 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 15 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 16 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 17 C 0.15 4.36 2.96 29.85 0.09 4.45 16 18 H 0.13 3.35 6.32 -2.38 -0.02 3.33 16 19 O -0.57 -18.49 13.11 -148.98 -1.95 -20.44 16 20 C -0.12 -3.10 4.16 -19.87 -0.08 -3.19 16 21 C -0.12 -2.57 8.07 22.27 0.18 -2.39 16 22 C -0.12 -2.31 10.05 22.27 0.22 -2.09 16 23 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 24 C -0.12 -2.71 10.05 22.27 0.22 -2.48 16 25 C -0.13 -3.50 7.51 22.27 0.17 -3.34 16 26 H 0.03 1.50 7.24 -2.39 -0.02 1.49 16 27 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.02 1.25 5.89 -2.39 -0.01 1.24 16 29 H 0.08 2.47 6.11 -2.39 -0.01 2.46 16 30 H 0.08 1.56 5.61 -2.39 -0.01 1.55 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 1.28 8.14 -2.39 -0.02 1.27 16 33 H 0.39 15.10 5.55 -92.71 -0.51 14.59 16 34 H 0.27 15.18 8.29 -92.70 -0.77 14.41 16 35 H 0.38 11.75 6.90 -74.06 -0.51 11.24 16 36 H 0.14 2.50 7.18 -2.91 -0.02 2.48 16 37 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 38 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 39 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 40 H 0.12 3.05 5.98 -2.91 -0.02 3.03 16 Total: -1.00 -74.36 315.98 1.89 -72.47 By element: Atomic # 1 Polarization: 43.84 SS G_CDS: 0.04 Total: 43.89 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 3.50 Total: -15.51 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -1.67 Total: -84.25 kcal Atomic # 8 Polarization: -57.81 SS G_CDS: -2.01 Total: -59.82 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -74.36 1.89 -72.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790371382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.896 kcal (2) G-P(sol) polarization free energy of solvation -74.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds