Wall clock time and date at job start Mon Mar 30 2020 01:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47442 * 2 1 4 4 C 1.52995 * 109.47116 * 239.99702 * 2 1 3 5 5 H 1.09001 * 109.47324 * 63.16621 * 4 2 1 6 6 N 1.46502 * 109.47250 * 303.16233 * 4 2 1 7 7 C 1.34780 * 119.99738 * 85.00253 * 6 4 2 8 8 O 1.21687 * 119.99828 * 359.97438 * 7 6 4 9 9 C 1.46366 * 119.99671 * 180.02562 * 7 6 4 10 10 H 1.08001 * 120.00499 * 359.97438 * 9 7 6 11 11 C 1.40055 * 120.00065 * 179.97438 * 9 7 6 12 12 N 1.30674 * 119.99719 * 359.97438 * 11 9 7 13 13 Si 1.86797 * 120.00237 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47407 * 89.99277 * 13 11 9 15 15 H 1.48498 * 109.46979 * 209.99730 * 13 11 9 16 16 H 1.48498 * 109.47202 * 329.99605 * 13 11 9 17 17 C 1.53009 * 109.47253 * 183.16285 * 4 2 1 18 18 H 1.08998 * 109.46813 * 302.26576 * 17 4 2 19 19 O 1.42900 * 109.47128 * 182.26686 * 17 4 2 20 20 C 1.50698 * 109.46821 * 62.26540 * 17 4 2 21 21 C 1.38238 * 119.99748 * 86.69474 * 20 17 4 22 22 C 1.38238 * 119.99706 * 179.80897 * 21 20 17 23 23 C 1.38228 * 119.99992 * 0.39252 * 22 21 20 24 24 C 1.38237 * 120.00005 * 359.85642 * 23 22 21 25 25 C 1.38230 * 120.00049 * 266.95752 * 20 17 4 26 26 H 1.08998 * 109.47075 * 59.99819 * 1 2 3 27 27 H 1.09003 * 109.47201 * 300.00113 * 1 2 3 28 28 H 1.08995 * 109.47435 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47063 * 120.00101 * 2 1 3 30 30 H 1.09003 * 109.47028 * 54.19498 * 3 2 1 31 31 H 1.08996 * 109.47508 * 174.19619 * 3 2 1 32 32 H 1.09000 * 109.47083 * 294.19934 * 3 2 1 33 33 H 0.96995 * 120.00014 * 264.99788 * 6 4 2 34 34 H 0.96998 * 119.99756 * 180.02562 * 12 11 9 35 35 H 0.96701 * 114.00288 * 300.00384 * 19 17 4 36 36 H 1.07999 * 120.00103 * 359.97438 * 21 20 17 37 37 H 1.08000 * 119.99488 * 180.22615 * 22 21 20 38 38 H 1.08004 * 120.00379 * 179.83754 * 23 22 21 39 39 H 1.08004 * 119.99819 * 179.97438 * 24 23 22 40 40 H 1.08002 * 119.99991 * 359.97438 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 1 1.7237 -0.1758 -2.1383 6 7 1.4904 -2.0788 -1.2878 7 6 0.2704 -2.2970 -1.8176 8 8 -0.3747 -1.3665 -2.2633 9 6 -0.2788 -3.6532 -1.8557 10 1 0.2936 -4.4791 -1.4597 11 6 -1.5468 -3.8800 -2.4056 12 7 -2.2396 -2.8808 -2.8843 13 14 -2.2481 -5.6107 -2.4536 14 1 -3.0152 -5.8687 -1.2086 15 1 -3.1479 -5.7477 -3.6270 16 1 -1.1386 -6.5915 -2.5635 17 6 3.5680 -0.7906 -1.2100 18 1 3.9757 0.2179 -1.1407 19 8 4.0470 -1.4172 -2.4016 20 6 4.0038 -1.5923 -0.0107 21 6 4.1092 -2.9677 -0.1000 22 6 4.5128 -3.7028 0.9990 23 6 4.8032 -3.0631 2.1895 24 6 4.6928 -1.6882 2.2802 25 6 4.2930 -0.9528 1.1801 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.5943 1.9854 0.8335 31 1 3.1250 1.4442 0.1039 32 1 1.7640 1.9254 -0.9374 33 1 2.0045 -2.8204 -0.9323 34 1 -3.1178 -3.0378 -3.2648 35 1 3.7236 -2.3196 -2.5288 36 1 3.8788 -3.4678 -1.0291 37 1 4.5987 -4.7770 0.9281 38 1 5.1160 -3.6376 3.0489 39 1 4.9193 -1.1885 3.2105 40 1 4.2069 0.1215 1.2510 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790371384.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:37 Heat of formation + Delta-G solvation = -73.733760 kcal Electronic energy + Delta-G solvation = -22577.315998 eV Core-core repulsion = 19356.500321 eV Total energy + Delta-G solvation = -3220.815677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.10464 -37.92446 -36.34054 -34.89953 -32.54644 -31.82264 -31.21270 -30.65224 -27.72632 -26.67659 -25.69800 -23.25240 -22.54517 -21.16283 -20.05536 -19.09913 -17.75784 -17.03454 -15.82618 -15.71355 -15.38583 -15.03092 -14.78565 -14.27563 -14.07242 -13.78987 -13.27696 -13.10814 -12.72856 -12.51013 -12.38860 -11.93661 -11.85168 -11.70051 -11.52071 -11.33566 -11.06953 -11.00446 -10.94172 -10.50559 -10.46717 -10.29615 -10.16718 -10.00856 -9.61439 -8.85362 -8.82936 -8.59825 -7.59113 -7.43432 -6.18624 -4.64480 1.41466 1.46524 3.12826 3.20213 3.22776 3.83370 4.09384 4.55985 4.64962 4.70362 4.86323 4.92377 5.04079 5.15410 5.20400 5.41329 5.50103 5.56007 5.57969 5.80338 5.80585 5.87556 6.00688 6.10005 6.17097 6.19200 6.38121 6.48131 6.51555 6.56610 6.62256 6.66044 6.72174 7.02401 7.05646 7.37933 7.42720 7.80572 7.91519 8.09344 8.31271 9.02402 9.52321 10.59894 10.79492 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017529 B = 0.006259 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.945732 B = 4472.319235 C = 5231.418033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.104 4.104 3 C -0.148 4.148 4 C 0.135 3.865 5 H 0.088 0.912 6 N -0.763 5.763 7 C 0.558 3.442 8 O -0.570 6.570 9 C -0.547 4.547 10 H 0.064 0.936 11 C 0.090 3.910 12 N -0.766 5.766 13 Si 0.904 3.096 14 H -0.273 1.273 15 H -0.280 1.280 16 H -0.266 1.266 17 C 0.136 3.864 18 H 0.111 0.889 19 O -0.555 6.555 20 C -0.099 4.099 21 C -0.115 4.115 22 C -0.113 4.113 23 C -0.126 4.126 24 C -0.120 4.120 25 C -0.111 4.111 26 H 0.063 0.937 27 H 0.027 0.973 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.376 0.624 34 H 0.267 0.733 35 H 0.377 0.623 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.289 1.404 8.436 14.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.124 4.124 3 C -0.205 4.205 4 C 0.028 3.972 5 H 0.106 0.894 6 N -0.420 5.420 7 C 0.362 3.638 8 O -0.452 6.452 9 C -0.584 4.584 10 H 0.082 0.918 11 C -0.130 4.130 12 N -0.394 5.394 13 Si 0.729 3.271 14 H -0.198 1.198 15 H -0.205 1.205 16 H -0.190 1.190 17 C 0.076 3.924 18 H 0.129 0.871 19 O -0.361 6.361 20 C -0.100 4.100 21 C -0.133 4.133 22 C -0.131 4.131 23 C -0.145 4.145 24 C -0.138 4.138 25 C -0.129 4.129 26 H 0.082 0.918 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.210 0.790 34 H 0.078 0.922 35 H 0.226 0.774 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.923 2.725 7.911 14.566 hybrid contribution -0.473 -1.809 0.429 1.918 sum 11.450 0.916 8.340 14.195 Atomic orbital electron populations 1.21796 0.93602 1.03351 1.00028 1.21544 0.97676 0.94847 0.98376 1.21922 0.99772 0.96961 1.01879 1.21255 0.90042 0.87371 0.98493 0.89401 1.46361 1.21410 1.06026 1.68216 1.18088 0.78502 0.90172 0.77029 1.90607 1.59013 1.44978 1.50631 1.20869 1.02435 0.92491 1.42655 0.91766 1.25656 0.96498 0.97679 0.93161 1.70010 1.10000 1.31251 1.28189 0.86437 0.79280 0.83226 0.78198 1.19839 1.20488 1.18987 1.21286 0.93855 0.95729 0.81532 0.87101 1.86526 1.73948 1.33449 1.42213 1.20578 0.98426 0.94633 0.96354 1.20936 0.99858 0.93485 0.99023 1.21101 0.99118 0.99838 0.93053 1.21103 1.00934 0.94708 0.97712 1.21089 1.00104 0.94262 0.98326 1.20977 0.99407 0.99937 0.92579 0.91790 0.95390 0.91306 0.91713 0.92982 0.93380 0.92494 0.79019 0.92182 0.77417 0.85954 0.86025 0.86394 0.86312 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 7.69 37.16 0.29 -2.42 16 2 C -0.10 -1.79 2.32 -90.63 -0.21 -2.00 16 3 C -0.15 -2.05 8.73 37.16 0.32 -1.72 16 4 C 0.14 2.51 1.81 -67.93 -0.12 2.38 16 5 H 0.09 1.91 7.58 -51.93 -0.39 1.51 16 6 N -0.76 -16.10 4.32 -55.21 -0.24 -16.34 16 7 C 0.56 14.97 5.99 -12.99 -0.08 14.90 16 8 O -0.57 -17.20 12.14 5.20 0.06 -17.13 16 9 C -0.55 -14.99 9.54 -35.63 -0.34 -15.33 16 10 H 0.06 1.63 7.85 -52.49 -0.41 1.22 16 11 C 0.09 2.45 5.50 -17.36 -0.10 2.36 16 12 N -0.77 -22.43 11.83 55.55 0.66 -21.78 16 13 Si 0.90 19.92 29.56 -169.99 -5.02 14.90 16 14 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 15 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 17 C 0.14 2.07 2.94 -27.88 -0.08 1.99 16 18 H 0.11 1.55 6.45 -51.93 -0.34 1.21 16 19 O -0.56 -9.05 13.11 -35.23 -0.46 -9.51 16 20 C -0.10 -1.40 4.16 -104.63 -0.44 -1.83 16 21 C -0.11 -1.57 7.53 -39.58 -0.30 -1.86 16 22 C -0.11 -1.38 10.05 -39.58 -0.40 -1.78 16 23 C -0.13 -1.44 10.05 -39.59 -0.40 -1.84 16 24 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 25 C -0.11 -1.40 8.07 -39.59 -0.32 -1.72 16 26 H 0.06 1.46 7.31 -51.93 -0.38 1.08 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 1.68 5.87 -51.93 -0.30 1.38 16 29 H 0.06 1.09 6.15 -51.92 -0.32 0.77 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.56 5.48 -51.93 -0.28 0.27 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.38 7.20 5.56 -40.82 -0.23 6.97 16 34 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 35 H 0.38 5.70 6.89 45.56 0.31 6.01 16 36 H 0.12 1.59 5.96 -52.49 -0.31 1.28 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 39 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 40 H 0.12 1.35 6.75 -52.49 -0.35 1.00 16 LS Contribution 315.43 15.07 4.75 4.75 Total: -1.00 -32.33 315.43 -7.50 -39.82 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -4.68 Total: 15.93 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -2.56 Total: -10.64 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.42 Total: -38.12 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.40 Total: -26.64 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.33 -7.50 -39.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790371384.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.909 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds