Wall clock time and date at job start Mon Mar 30 2020 01:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47442 * 2 1 4 4 C 1.52995 * 109.47116 * 239.99702 * 2 1 3 5 5 H 1.09001 * 109.47324 * 63.16621 * 4 2 1 6 6 N 1.46502 * 109.47250 * 303.16233 * 4 2 1 7 7 C 1.34780 * 119.99738 * 85.00253 * 6 4 2 8 8 O 1.21687 * 119.99828 * 359.97438 * 7 6 4 9 9 C 1.46366 * 119.99671 * 180.02562 * 7 6 4 10 10 H 1.08001 * 120.00499 * 359.97438 * 9 7 6 11 11 C 1.40055 * 120.00065 * 179.97438 * 9 7 6 12 12 N 1.30674 * 119.99719 * 359.97438 * 11 9 7 13 13 Si 1.86797 * 120.00237 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47407 * 89.99277 * 13 11 9 15 15 H 1.48498 * 109.46979 * 209.99730 * 13 11 9 16 16 H 1.48498 * 109.47202 * 329.99605 * 13 11 9 17 17 C 1.53009 * 109.47253 * 183.16285 * 4 2 1 18 18 H 1.08998 * 109.46813 * 302.26576 * 17 4 2 19 19 O 1.42900 * 109.47128 * 182.26686 * 17 4 2 20 20 C 1.50698 * 109.46821 * 62.26540 * 17 4 2 21 21 C 1.38238 * 119.99748 * 86.69474 * 20 17 4 22 22 C 1.38238 * 119.99706 * 179.80897 * 21 20 17 23 23 C 1.38228 * 119.99992 * 0.39252 * 22 21 20 24 24 C 1.38237 * 120.00005 * 359.85642 * 23 22 21 25 25 C 1.38230 * 120.00049 * 266.95752 * 20 17 4 26 26 H 1.08998 * 109.47075 * 59.99819 * 1 2 3 27 27 H 1.09003 * 109.47201 * 300.00113 * 1 2 3 28 28 H 1.08995 * 109.47435 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47063 * 120.00101 * 2 1 3 30 30 H 1.09003 * 109.47028 * 54.19498 * 3 2 1 31 31 H 1.08996 * 109.47508 * 174.19619 * 3 2 1 32 32 H 1.09000 * 109.47083 * 294.19934 * 3 2 1 33 33 H 0.96995 * 120.00014 * 264.99788 * 6 4 2 34 34 H 0.96998 * 119.99756 * 180.02562 * 12 11 9 35 35 H 0.96701 * 114.00288 * 300.00384 * 19 17 4 36 36 H 1.07999 * 120.00103 * 359.97438 * 21 20 17 37 37 H 1.08000 * 119.99488 * 180.22615 * 22 21 20 38 38 H 1.08004 * 120.00379 * 179.83754 * 23 22 21 39 39 H 1.08004 * 119.99819 * 179.97438 * 24 23 22 40 40 H 1.08002 * 119.99991 * 359.97438 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 1 1.7237 -0.1758 -2.1383 6 7 1.4904 -2.0788 -1.2878 7 6 0.2704 -2.2970 -1.8176 8 8 -0.3747 -1.3665 -2.2633 9 6 -0.2788 -3.6532 -1.8557 10 1 0.2936 -4.4791 -1.4597 11 6 -1.5468 -3.8800 -2.4056 12 7 -2.2396 -2.8808 -2.8843 13 14 -2.2481 -5.6107 -2.4536 14 1 -3.0152 -5.8687 -1.2086 15 1 -3.1479 -5.7477 -3.6270 16 1 -1.1386 -6.5915 -2.5635 17 6 3.5680 -0.7906 -1.2100 18 1 3.9757 0.2179 -1.1407 19 8 4.0470 -1.4172 -2.4016 20 6 4.0038 -1.5923 -0.0107 21 6 4.1092 -2.9677 -0.1000 22 6 4.5128 -3.7028 0.9990 23 6 4.8032 -3.0631 2.1895 24 6 4.6928 -1.6882 2.2802 25 6 4.2930 -0.9528 1.1801 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.5943 1.9854 0.8335 31 1 3.1250 1.4442 0.1039 32 1 1.7640 1.9254 -0.9374 33 1 2.0045 -2.8204 -0.9323 34 1 -3.1178 -3.0378 -3.2648 35 1 3.7236 -2.3196 -2.5288 36 1 3.8788 -3.4678 -1.0291 37 1 4.5987 -4.7770 0.9281 38 1 5.1160 -3.6376 3.0489 39 1 4.9193 -1.1885 3.2105 40 1 4.2069 0.1215 1.2510 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790371384.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:36 Heat of formation + Delta-G solvation = -96.596985 kcal Electronic energy + Delta-G solvation = -22578.307422 eV Core-core repulsion = 19356.500321 eV Total energy + Delta-G solvation = -3221.807101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.35396 -39.38916 -37.87224 -36.41621 -34.59229 -33.58717 -32.31356 -31.64451 -29.28539 -28.32352 -27.32523 -24.61642 -23.50651 -22.30572 -21.88382 -20.60255 -19.39852 -18.44827 -17.47171 -17.09911 -16.75651 -16.40565 -16.18673 -15.77600 -15.49917 -15.04320 -14.62864 -14.47106 -14.12481 -13.79783 -13.70475 -13.50838 -13.34330 -13.16755 -12.93707 -12.77235 -12.69556 -12.57176 -12.52752 -12.07012 -11.94172 -11.92124 -11.62743 -11.48347 -10.94806 -10.89253 -9.79558 -9.68640 -9.63685 -9.26996 -8.24799 -6.80657 0.45116 0.53689 1.38847 1.39817 1.54171 2.24358 2.52960 2.86763 3.11981 3.38940 3.65719 3.72409 3.79928 4.00406 4.12468 4.16029 4.22902 4.32362 4.46148 4.49642 4.66327 4.70143 4.81891 4.84551 4.93214 5.03635 5.10791 5.14034 5.18434 5.24385 5.33821 5.48520 5.60154 5.62151 5.66304 5.67759 5.93378 6.14577 6.26121 6.34627 6.55893 6.91265 7.60220 8.56263 8.74647 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017529 B = 0.006259 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.945732 B = 4472.319235 C = 5231.418033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.095 4.095 3 C -0.142 4.142 4 C 0.135 3.865 5 H 0.048 0.952 6 N -0.749 5.749 7 C 0.548 3.452 8 O -0.613 6.613 9 C -0.576 4.576 10 H 0.079 0.921 11 C 0.034 3.966 12 N -0.819 5.819 13 Si 0.988 3.012 14 H -0.265 1.265 15 H -0.274 1.274 16 H -0.250 1.250 17 C 0.146 3.854 18 H 0.130 0.870 19 O -0.566 6.566 20 C -0.117 4.117 21 C -0.134 4.134 22 C -0.122 4.122 23 C -0.126 4.126 24 C -0.121 4.121 25 C -0.117 4.117 26 H 0.030 0.970 27 H 0.051 0.949 28 H 0.024 0.976 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.388 0.612 34 H 0.272 0.728 35 H 0.379 0.621 36 H 0.118 0.882 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.071 0.506 10.707 17.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.115 4.115 3 C -0.199 4.199 4 C 0.029 3.971 5 H 0.066 0.934 6 N -0.405 5.405 7 C 0.352 3.648 8 O -0.499 6.499 9 C -0.613 4.613 10 H 0.098 0.902 11 C -0.181 4.181 12 N -0.448 5.448 13 Si 0.808 3.192 14 H -0.189 1.189 15 H -0.199 1.199 16 H -0.173 1.173 17 C 0.087 3.913 18 H 0.147 0.853 19 O -0.373 6.373 20 C -0.118 4.118 21 C -0.153 4.153 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.139 4.139 25 C -0.135 4.135 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.223 0.777 34 H 0.082 0.918 35 H 0.228 0.772 36 H 0.135 0.865 37 H 0.156 0.844 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.763 1.823 10.207 17.231 hybrid contribution -0.959 -1.502 -0.223 1.796 sum 12.804 0.321 9.984 16.239 Atomic orbital electron populations 1.21650 0.96505 1.00227 0.99497 1.21456 0.94891 0.97324 0.97827 1.21880 1.01751 0.94157 1.02160 1.21350 0.92687 0.85415 0.97664 0.93374 1.45990 1.19848 1.07799 1.66878 1.18320 0.79767 0.89900 0.76859 1.90572 1.60705 1.46070 1.52504 1.21391 1.03424 0.93283 1.43235 0.90247 1.26813 0.96605 1.02714 0.92000 1.70178 1.10695 1.34393 1.29553 0.85155 0.78661 0.76881 0.78461 1.18939 1.19942 1.17331 1.21221 0.90924 0.97064 0.82085 0.85276 1.86503 1.73932 1.33756 1.43077 1.20462 1.00270 0.94719 0.96329 1.21058 1.00860 0.93726 0.99618 1.21374 0.98816 1.00811 0.93001 1.21496 0.99668 0.95150 0.98104 1.21466 0.98965 0.94438 0.99008 1.21226 0.99061 1.01009 0.92190 0.95093 0.92975 0.95679 0.90461 0.91205 0.90324 0.93523 0.77677 0.91847 0.77152 0.86461 0.84424 0.83776 0.83519 0.84294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.20 7.69 71.98 0.55 -4.64 16 2 C -0.10 -3.23 2.32 -10.80 -0.03 -3.25 16 3 C -0.14 -3.66 8.73 71.98 0.63 -3.03 16 4 C 0.14 5.12 1.81 44.99 0.08 5.20 16 5 H 0.05 2.21 7.58 -2.39 -0.02 2.20 16 6 N -0.75 -32.66 4.32 -446.82 -1.93 -34.59 16 7 C 0.55 30.80 5.99 86.36 0.52 31.32 16 8 O -0.61 -39.31 12.14 -4.31 -0.05 -39.36 16 9 C -0.58 -32.39 9.54 24.83 0.24 -32.15 16 10 H 0.08 4.05 7.85 -2.91 -0.02 4.03 16 11 C 0.03 1.88 5.50 85.31 0.47 2.35 16 12 N -0.82 -49.90 11.83 21.84 0.26 -49.65 16 13 Si 0.99 41.22 29.56 68.60 2.03 43.24 16 14 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 15 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 16 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 17 C 0.15 4.37 2.94 29.85 0.09 4.46 16 18 H 0.13 3.35 6.45 -2.39 -0.02 3.33 16 19 O -0.57 -18.50 13.11 -148.98 -1.95 -20.46 16 20 C -0.12 -3.10 4.16 -19.87 -0.08 -3.18 16 21 C -0.13 -3.50 7.53 22.27 0.17 -3.34 16 22 C -0.12 -2.70 10.05 22.27 0.22 -2.48 16 23 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 24 C -0.12 -2.31 10.05 22.27 0.22 -2.09 16 25 C -0.12 -2.58 8.07 22.27 0.18 -2.40 16 26 H 0.03 1.49 7.31 -2.39 -0.02 1.47 16 27 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.02 1.26 5.87 -2.39 -0.01 1.24 16 29 H 0.08 2.46 6.15 -2.38 -0.01 2.45 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.08 1.55 5.48 -2.39 -0.01 1.54 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.39 15.10 5.56 -92.71 -0.52 14.58 16 34 H 0.27 15.13 8.29 -92.71 -0.77 14.36 16 35 H 0.38 11.75 6.89 -74.06 -0.51 11.24 16 36 H 0.12 3.05 5.96 -2.91 -0.02 3.03 16 37 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.14 2.50 6.75 -2.91 -0.02 2.48 16 Total: -1.00 -74.38 315.43 1.88 -72.50 By element: Atomic # 1 Polarization: 43.71 SS G_CDS: 0.05 Total: 43.75 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 3.48 Total: -15.44 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -1.67 Total: -84.24 kcal Atomic # 8 Polarization: -57.81 SS G_CDS: -2.01 Total: -59.82 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Total: -74.38 1.88 -72.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790371384.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.101 kcal (2) G-P(sol) polarization free energy of solvation -74.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds