Wall clock time and date at job start Mon Mar 30 2020 01:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46954 * 2 1 4 4 C 1.53000 * 109.47013 * 120.00092 * 2 1 3 5 5 H 1.08997 * 109.46946 * 299.99668 * 4 2 1 6 6 N 1.46503 * 109.46879 * 60.00169 * 4 2 1 7 7 C 1.34777 * 119.99912 * 274.99140 * 6 4 2 8 8 O 1.21690 * 119.99835 * 0.02562 * 7 6 4 9 9 C 1.46372 * 119.99879 * 180.02562 * 7 6 4 10 10 H 1.07990 * 120.00268 * 0.02562 * 9 7 6 11 11 C 1.40055 * 119.99724 * 180.02562 * 9 7 6 12 12 N 1.30671 * 119.99701 * 0.02562 * 11 9 7 13 13 Si 1.86801 * 119.99741 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47111 * 60.00187 * 13 11 9 15 15 H 1.48503 * 109.46948 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46950 * 299.99730 * 13 11 9 17 17 C 1.53002 * 109.46672 * 179.97438 * 4 2 1 18 18 H 1.09002 * 109.47070 * 65.00130 * 17 4 2 19 19 O 1.42898 * 109.47113 * 305.00000 * 17 4 2 20 20 C 1.50703 * 109.46966 * 185.00040 * 17 4 2 21 21 C 1.38236 * 119.99787 * 84.72732 * 20 17 4 22 22 C 1.38241 * 119.99636 * 179.81278 * 21 20 17 23 23 C 1.38234 * 120.00115 * 0.39672 * 22 21 20 24 24 C 1.38240 * 119.99714 * 359.85290 * 23 22 21 25 25 C 1.38228 * 120.00011 * 265.00375 * 20 17 4 26 26 H 1.09005 * 109.46847 * 299.99945 * 1 2 3 27 27 H 1.08999 * 109.47369 * 59.99712 * 1 2 3 28 28 H 1.08997 * 109.47011 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46847 * 240.00055 * 2 1 3 30 30 H 1.09001 * 109.47013 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47318 * 300.00320 * 3 2 1 32 32 H 1.09005 * 109.47298 * 60.00331 * 3 2 1 33 33 H 0.96999 * 119.99947 * 95.00393 * 6 4 2 34 34 H 0.97005 * 119.99480 * 180.02562 * 12 11 9 35 35 H 0.96698 * 113.99898 * 299.99778 * 19 17 4 36 36 H 1.07996 * 120.00216 * 359.97438 * 21 20 17 37 37 H 1.08000 * 119.99857 * 180.22806 * 22 21 20 38 38 H 1.07998 * 120.00030 * 179.84064 * 23 22 21 39 39 H 1.08003 * 119.99655 * 179.97438 * 24 23 22 40 40 H 1.08004 * 120.00508 * 359.97379 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1392 6 7 1.5516 -2.1025 1.2491 7 6 0.3297 -2.3853 1.7425 8 8 -0.3681 -1.4932 2.1876 9 6 -0.1580 -3.7654 1.7429 10 1 0.4614 -4.5571 1.3483 11 6 -1.4280 -4.0591 2.2551 12 7 -2.1776 -3.1010 2.7322 13 14 -2.0501 -5.8205 2.2563 14 1 -1.1340 -6.6684 3.0605 15 1 -3.4120 -5.8640 2.8468 16 1 -2.0992 -6.3290 0.8619 17 6 3.5700 -0.7218 1.2488 18 1 3.9337 0.3019 1.3382 19 8 4.0458 -1.2915 0.0278 20 6 4.0724 -1.5368 2.4127 21 6 4.1985 -2.9081 2.2929 22 6 4.6630 -3.6553 3.3592 23 6 4.9935 -3.0320 4.5480 24 6 4.8624 -1.6612 4.6694 25 6 4.4015 -0.9137 3.6019 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 2.1078 -2.8135 0.8942 34 1 -3.0571 -3.3045 3.0873 35 1 3.7602 -2.2037 -0.1182 36 1 3.9367 -3.3955 1.3654 37 1 4.7650 -4.7262 3.2645 38 1 5.3539 -3.6160 5.3819 39 1 5.1202 -1.1743 5.5984 40 1 4.2992 0.1573 3.6969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790371388.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:40 Heat of formation + Delta-G solvation = -74.182277 kcal Electronic energy + Delta-G solvation = -22504.367495 eV Core-core repulsion = 19283.532368 eV Total energy + Delta-G solvation = -3220.835127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.89411 -38.01282 -36.40864 -34.54322 -32.53472 -31.95750 -31.17387 -30.54720 -27.67123 -26.64322 -25.64911 -23.32195 -22.41632 -20.86164 -20.09953 -19.07598 -17.83068 -17.02573 -15.76904 -15.70276 -15.36527 -14.89571 -14.66154 -14.10038 -13.98788 -13.81579 -13.45368 -13.16991 -12.59504 -12.55541 -12.23352 -11.93317 -11.78647 -11.60867 -11.39177 -11.19762 -11.04059 -10.96431 -10.82946 -10.68601 -10.45128 -10.30228 -10.05732 -9.97130 -9.68451 -8.83757 -8.69565 -8.45352 -7.58281 -7.42289 -6.17662 -4.62992 1.55732 1.62642 3.14542 3.19988 3.21120 3.95807 4.09742 4.55303 4.61104 4.73922 4.88064 5.01981 5.16660 5.25291 5.30127 5.50295 5.57731 5.63838 5.69536 5.83498 5.87677 5.91119 6.12116 6.19832 6.24282 6.27194 6.39199 6.55458 6.59534 6.63798 6.70174 6.75174 6.78259 7.05488 7.19521 7.39501 7.43502 7.69835 7.90080 8.10066 8.31427 9.03325 9.52118 10.60958 10.80736 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013615 B = 0.007405 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.044223 B = 3780.105135 C = 5135.090151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 C -0.145 4.145 4 C 0.136 3.864 5 H 0.083 0.917 6 N -0.758 5.758 7 C 0.561 3.439 8 O -0.571 6.571 9 C -0.546 4.546 10 H 0.063 0.937 11 C 0.090 3.910 12 N -0.767 5.767 13 Si 0.903 3.097 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.269 1.269 17 C 0.138 3.862 18 H 0.111 0.889 19 O -0.553 6.553 20 C -0.100 4.100 21 C -0.098 4.098 22 C -0.114 4.114 23 C -0.125 4.125 24 C -0.120 4.120 25 C -0.113 4.113 26 H 0.058 0.942 27 H 0.027 0.973 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.371 0.629 34 H 0.268 0.732 35 H 0.371 0.629 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.485 1.923 -1.059 12.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.117 4.117 3 C -0.203 4.203 4 C 0.029 3.971 5 H 0.101 0.899 6 N -0.414 5.414 7 C 0.365 3.635 8 O -0.453 6.453 9 C -0.583 4.583 10 H 0.082 0.918 11 C -0.130 4.130 12 N -0.395 5.395 13 Si 0.728 3.272 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.194 1.194 17 C 0.078 3.922 18 H 0.128 0.872 19 O -0.359 6.359 20 C -0.100 4.100 21 C -0.116 4.116 22 C -0.132 4.132 23 C -0.143 4.143 24 C -0.138 4.138 25 C -0.131 4.131 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.203 0.797 34 H 0.078 0.922 35 H 0.219 0.781 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.040 3.234 -0.688 12.485 hybrid contribution -0.409 -1.850 0.042 1.895 sum 11.630 1.384 -0.646 11.730 Atomic orbital electron populations 1.21818 0.93856 1.03455 0.99784 1.21413 0.97026 0.94908 0.98343 1.21867 1.00350 0.96795 1.01282 1.21224 0.90523 0.86803 0.98570 0.89899 1.46182 1.20282 1.05441 1.69479 1.18035 0.78507 0.89950 0.76980 1.90610 1.55969 1.48502 1.50226 1.20817 1.01646 0.92224 1.43636 0.91849 1.25651 0.96319 0.97895 0.93129 1.70000 1.08376 1.32448 1.28697 0.86511 0.78171 0.83436 0.79081 1.19402 1.20619 1.19359 1.21279 0.93459 0.96284 0.81169 0.87164 1.86554 1.76856 1.32582 1.39882 1.20466 0.98549 0.94737 0.96267 1.20775 0.98772 0.93196 0.98886 1.21067 0.99112 0.99681 0.93377 1.21080 1.00890 0.94780 0.97576 1.21047 1.00179 0.94248 0.98365 1.20899 0.99485 0.99766 0.92929 0.92258 0.95370 0.91084 0.91559 0.92950 0.93220 0.93015 0.79668 0.92169 0.78083 0.86562 0.86184 0.86479 0.86392 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 7.71 37.16 0.29 -2.44 16 2 C -0.10 -1.69 2.49 -90.62 -0.23 -1.92 16 3 C -0.15 -2.11 8.84 37.16 0.33 -1.78 16 4 C 0.14 2.47 1.73 -67.93 -0.12 2.36 16 5 H 0.08 1.76 7.58 -51.93 -0.39 1.37 16 6 N -0.76 -15.68 4.15 -55.21 -0.23 -15.91 16 7 C 0.56 14.96 6.10 -12.99 -0.08 14.88 16 8 O -0.57 -17.19 12.14 5.20 0.06 -17.13 16 9 C -0.55 -14.90 9.54 -35.63 -0.34 -15.24 16 10 H 0.06 1.59 7.85 -52.49 -0.41 1.18 16 11 C 0.09 2.46 5.50 -17.36 -0.10 2.36 16 12 N -0.77 -22.50 11.83 55.55 0.66 -21.84 16 13 Si 0.90 19.98 29.56 -169.99 -5.02 14.95 16 14 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 17 C 0.14 2.05 2.62 -27.88 -0.07 1.98 16 18 H 0.11 1.52 6.62 -51.93 -0.34 1.17 16 19 O -0.55 -7.90 12.26 -35.23 -0.43 -8.33 16 20 C -0.10 -1.52 4.78 -104.62 -0.50 -2.02 16 21 C -0.10 -1.45 8.17 -39.58 -0.32 -1.78 16 22 C -0.11 -1.60 10.05 -39.58 -0.40 -2.00 16 23 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 24 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 25 C -0.11 -1.63 9.68 -39.59 -0.38 -2.02 16 26 H 0.06 1.34 7.53 -51.93 -0.39 0.95 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 1.73 5.78 -51.93 -0.30 1.43 16 29 H 0.07 1.14 7.56 -51.93 -0.39 0.75 16 30 H 0.05 0.69 6.55 -51.93 -0.34 0.35 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.37 6.79 5.58 -40.82 -0.23 6.56 16 34 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 35 H 0.37 4.63 6.26 45.56 0.28 4.92 16 36 H 0.12 1.53 5.62 -52.49 -0.29 1.24 16 37 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 40 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 LS Contribution 320.41 15.07 4.83 4.83 Total: -1.00 -32.63 320.41 -7.76 -40.39 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -4.90 Total: 14.75 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -2.72 Total: -11.71 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.43 Total: -37.75 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.37 Total: -25.45 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.63 -7.76 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790371388.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.796 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds