Wall clock time and date at job start Mon Mar 30 2020 01:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46954 * 2 1 4 4 C 1.53000 * 109.47013 * 120.00092 * 2 1 3 5 5 H 1.08997 * 109.46946 * 299.99668 * 4 2 1 6 6 N 1.46503 * 109.46879 * 60.00169 * 4 2 1 7 7 C 1.34777 * 119.99912 * 274.99140 * 6 4 2 8 8 O 1.21690 * 119.99835 * 0.02562 * 7 6 4 9 9 C 1.46372 * 119.99879 * 180.02562 * 7 6 4 10 10 H 1.07990 * 120.00268 * 0.02562 * 9 7 6 11 11 C 1.40055 * 119.99724 * 180.02562 * 9 7 6 12 12 N 1.30671 * 119.99701 * 0.02562 * 11 9 7 13 13 Si 1.86801 * 119.99741 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47111 * 60.00187 * 13 11 9 15 15 H 1.48503 * 109.46948 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46950 * 299.99730 * 13 11 9 17 17 C 1.53002 * 109.46672 * 179.97438 * 4 2 1 18 18 H 1.09002 * 109.47070 * 65.00130 * 17 4 2 19 19 O 1.42898 * 109.47113 * 305.00000 * 17 4 2 20 20 C 1.50703 * 109.46966 * 185.00040 * 17 4 2 21 21 C 1.38236 * 119.99787 * 84.72732 * 20 17 4 22 22 C 1.38241 * 119.99636 * 179.81278 * 21 20 17 23 23 C 1.38234 * 120.00115 * 0.39672 * 22 21 20 24 24 C 1.38240 * 119.99714 * 359.85290 * 23 22 21 25 25 C 1.38228 * 120.00011 * 265.00375 * 20 17 4 26 26 H 1.09005 * 109.46847 * 299.99945 * 1 2 3 27 27 H 1.08999 * 109.47369 * 59.99712 * 1 2 3 28 28 H 1.08997 * 109.47011 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46847 * 240.00055 * 2 1 3 30 30 H 1.09001 * 109.47013 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47318 * 300.00320 * 3 2 1 32 32 H 1.09005 * 109.47298 * 60.00331 * 3 2 1 33 33 H 0.96999 * 119.99947 * 95.00393 * 6 4 2 34 34 H 0.97005 * 119.99480 * 180.02562 * 12 11 9 35 35 H 0.96698 * 113.99898 * 299.99778 * 19 17 4 36 36 H 1.07996 * 120.00216 * 359.97438 * 21 20 17 37 37 H 1.08000 * 119.99857 * 180.22806 * 22 21 20 38 38 H 1.07998 * 120.00030 * 179.84064 * 23 22 21 39 39 H 1.08003 * 119.99655 * 179.97438 * 24 23 22 40 40 H 1.08004 * 120.00508 * 359.97379 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1392 6 7 1.5516 -2.1025 1.2491 7 6 0.3297 -2.3853 1.7425 8 8 -0.3681 -1.4932 2.1876 9 6 -0.1580 -3.7654 1.7429 10 1 0.4614 -4.5571 1.3483 11 6 -1.4280 -4.0591 2.2551 12 7 -2.1776 -3.1010 2.7322 13 14 -2.0501 -5.8205 2.2563 14 1 -1.1340 -6.6684 3.0605 15 1 -3.4120 -5.8640 2.8468 16 1 -2.0992 -6.3290 0.8619 17 6 3.5700 -0.7218 1.2488 18 1 3.9337 0.3019 1.3382 19 8 4.0458 -1.2915 0.0278 20 6 4.0724 -1.5368 2.4127 21 6 4.1985 -2.9081 2.2929 22 6 4.6630 -3.6553 3.3592 23 6 4.9935 -3.0320 4.5480 24 6 4.8624 -1.6612 4.6694 25 6 4.4015 -0.9137 3.6019 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 2.1078 -2.8135 0.8942 34 1 -3.0571 -3.3045 3.0873 35 1 3.7602 -2.2037 -0.1182 36 1 3.9367 -3.3955 1.3654 37 1 4.7650 -4.7262 3.2645 38 1 5.3539 -3.6160 5.3819 39 1 5.1202 -1.1743 5.5984 40 1 4.2992 0.1573 3.6969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790371388.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:39 Heat of formation + Delta-G solvation = -96.519193 kcal Electronic energy + Delta-G solvation = -22505.336096 eV Core-core repulsion = 19283.532368 eV Total energy + Delta-G solvation = -3221.803728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.19292 -39.45581 -37.99817 -36.01566 -34.55304 -33.64775 -32.41795 -31.65057 -29.22836 -28.32023 -27.26672 -24.71566 -23.50838 -22.12158 -21.81434 -20.66530 -19.45764 -18.39077 -17.50684 -17.08913 -16.78018 -16.32102 -16.05112 -15.65459 -15.53982 -15.10908 -14.69678 -14.47021 -14.22031 -13.88177 -13.55521 -13.46765 -13.38861 -13.02572 -12.91500 -12.74760 -12.69395 -12.52855 -12.28195 -12.18430 -12.01363 -11.89996 -11.61135 -11.45714 -10.98087 -10.85912 -9.78574 -9.69416 -9.58084 -9.25145 -8.22723 -6.77344 0.46109 0.54808 1.39038 1.41807 1.52231 2.24978 2.55916 2.85127 3.10062 3.47515 3.62177 3.73395 3.93593 3.98173 4.15593 4.21268 4.22334 4.30143 4.44004 4.53286 4.64486 4.69920 4.81859 4.88724 4.95993 5.06612 5.10950 5.14408 5.17366 5.28743 5.35881 5.51425 5.57967 5.64032 5.64609 5.66983 5.95825 6.14769 6.27779 6.35820 6.62788 6.93696 7.62673 8.58645 8.77905 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013615 B = 0.007405 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.044223 B = 3780.105135 C = 5135.090151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.092 4.092 3 C -0.138 4.138 4 C 0.139 3.861 5 H 0.048 0.952 6 N -0.743 5.743 7 C 0.553 3.447 8 O -0.614 6.614 9 C -0.574 4.574 10 H 0.080 0.920 11 C 0.033 3.967 12 N -0.819 5.819 13 Si 0.986 3.014 14 H -0.257 1.257 15 H -0.278 1.278 16 H -0.256 1.256 17 C 0.155 3.845 18 H 0.128 0.872 19 O -0.551 6.551 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.128 4.128 23 C -0.131 4.131 24 C -0.129 4.129 25 C -0.129 4.129 26 H 0.029 0.971 27 H 0.049 0.951 28 H 0.028 0.972 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.385 0.615 34 H 0.270 0.730 35 H 0.379 0.621 36 H 0.126 0.874 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.214 0.920 -1.554 14.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.112 4.112 3 C -0.196 4.196 4 C 0.032 3.968 5 H 0.067 0.933 6 N -0.398 5.398 7 C 0.356 3.644 8 O -0.500 6.500 9 C -0.611 4.611 10 H 0.098 0.902 11 C -0.182 4.182 12 N -0.449 5.449 13 Si 0.806 3.194 14 H -0.181 1.181 15 H -0.203 1.203 16 H -0.180 1.180 17 C 0.095 3.905 18 H 0.145 0.855 19 O -0.358 6.358 20 C -0.122 4.122 21 C -0.134 4.134 22 C -0.146 4.146 23 C -0.149 4.149 24 C -0.147 4.147 25 C -0.147 4.147 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.219 0.781 34 H 0.080 0.920 35 H 0.228 0.772 36 H 0.144 0.856 37 H 0.156 0.844 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.829 2.224 -1.214 14.059 hybrid contribution -0.892 -1.505 0.203 1.761 sum 12.937 0.719 -1.011 12.997 Atomic orbital electron populations 1.21660 0.96493 1.00429 0.99294 1.21370 0.94524 0.97216 0.98071 1.21805 1.01590 0.94315 1.01874 1.21295 0.93095 0.84842 0.97548 0.93342 1.45770 1.18727 1.07183 1.68086 1.18235 0.79748 0.89686 0.76737 1.90577 1.57737 1.49565 1.52104 1.21353 1.02569 0.93123 1.44083 0.90168 1.26792 0.96310 1.03021 0.92033 1.70175 1.09015 1.35490 1.30222 0.85246 0.77550 0.76860 0.79735 1.18107 1.20252 1.18037 1.21081 0.90415 0.97397 0.81599 0.85469 1.86546 1.76572 1.33262 1.39388 1.20598 0.99654 0.95178 0.96721 1.21031 0.99226 0.93337 0.99792 1.21409 0.98934 1.00789 0.93464 1.21471 1.00174 0.95119 0.98164 1.21414 0.99607 0.94598 0.99059 1.21220 0.99593 1.00820 0.93093 0.95228 0.93219 0.95317 0.90629 0.90846 0.91736 0.93412 0.78100 0.91969 0.77191 0.85599 0.84385 0.84049 0.84068 0.85001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.16 7.71 71.98 0.56 -4.60 16 2 C -0.09 -3.16 2.49 -10.79 -0.03 -3.19 16 3 C -0.14 -3.76 8.84 71.98 0.64 -3.12 16 4 C 0.14 5.07 1.73 44.99 0.08 5.15 16 5 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 6 N -0.74 -31.12 4.15 -446.82 -1.85 -32.98 16 7 C 0.55 30.41 6.10 86.36 0.53 30.94 16 8 O -0.61 -38.88 12.14 -4.32 -0.05 -38.93 16 9 C -0.57 -31.78 9.54 24.83 0.24 -31.55 16 10 H 0.08 4.00 7.85 -2.92 -0.02 3.98 16 11 C 0.03 1.85 5.50 85.31 0.47 2.32 16 12 N -0.82 -49.74 11.83 21.84 0.26 -49.48 16 13 Si 0.99 41.05 29.56 68.60 2.03 43.07 16 14 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 15 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 16 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 17 C 0.15 4.41 2.62 29.85 0.08 4.49 16 18 H 0.13 3.21 6.62 -2.39 -0.02 3.20 16 19 O -0.55 -14.53 12.26 -148.98 -1.83 -16.36 16 20 C -0.12 -3.57 4.78 -19.87 -0.09 -3.67 16 21 C -0.12 -3.29 8.17 22.27 0.18 -3.11 16 22 C -0.13 -3.39 10.05 22.27 0.22 -3.16 16 23 C -0.13 -3.28 10.05 22.27 0.22 -3.05 16 24 C -0.13 -3.28 10.05 22.27 0.22 -3.05 16 25 C -0.13 -3.61 9.68 22.27 0.22 -3.39 16 26 H 0.03 1.39 7.53 -2.38 -0.02 1.37 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.03 1.43 5.78 -2.39 -0.01 1.42 16 29 H 0.08 2.48 7.56 -2.38 -0.02 2.46 16 30 H 0.07 1.71 6.55 -2.39 -0.02 1.69 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.38 13.95 5.58 -92.71 -0.52 13.43 16 34 H 0.27 15.09 8.29 -92.70 -0.77 14.32 16 35 H 0.38 8.71 6.26 -74.06 -0.46 8.25 16 36 H 0.13 3.15 5.62 -2.91 -0.02 3.14 16 37 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 38 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 39 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 40 H 0.13 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -73.48 320.41 2.16 -71.32 By element: Atomic # 1 Polarization: 42.27 SS G_CDS: 0.08 Total: 42.35 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 3.53 Total: -19.00 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -1.60 Total: -82.45 kcal Atomic # 8 Polarization: -53.41 SS G_CDS: -1.88 Total: -55.29 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.07 kcal Total: -73.48 2.16 -71.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790371388.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.200 kcal (2) G-P(sol) polarization free energy of solvation -73.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds