Wall clock time and date at job start Mon Mar 30 2020 02:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47051 * 2 1 4 4 H 1.08998 * 109.46889 * 304.99993 * 3 2 1 5 5 C 1.52992 * 109.46816 * 65.00442 * 3 2 1 6 6 C 1.52997 * 109.46824 * 185.00344 * 3 2 1 7 7 O 1.42907 * 109.46850 * 175.00160 * 6 3 2 8 8 N 1.41603 * 113.99860 * 180.02562 * 7 6 3 9 9 C 1.29325 * 119.99710 * 180.02562 * 8 7 6 10 10 C 1.47662 * 119.99804 * 179.97438 * 9 8 7 11 11 C 1.39682 * 120.11403 * 359.72474 * 10 9 8 12 12 C 1.37994 * 119.98301 * 179.76532 * 11 10 9 13 13 C 1.38242 * 120.22557 * 0.50874 * 12 11 10 14 14 C 1.38965 * 120.23154 * 359.74449 * 13 12 11 15 15 O 1.35758 * 119.99505 * 179.97438 * 14 13 12 16 16 C 1.34830 * 117.00189 * 174.47807 * 15 14 13 17 17 H 1.08006 * 119.99423 * 5.06426 * 16 15 14 18 18 C 1.38651 * 120.00420 * 185.05843 * 16 15 14 19 19 N 1.31560 * 119.99508 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00229 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47097 * 60.00528 * 20 18 16 22 22 H 1.48505 * 109.47209 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47191 * 300.00338 * 20 18 16 24 24 C 1.38634 * 120.00756 * 0.02562 * 14 13 12 25 25 H 1.08998 * 109.46875 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46842 * 299.99661 * 1 2 3 27 27 H 1.09001 * 109.47601 * 59.99455 * 1 2 3 28 28 H 1.09001 * 109.46842 * 240.00339 * 2 1 3 29 29 H 1.08992 * 109.47487 * 120.00354 * 2 1 3 30 30 H 1.08998 * 109.47758 * 60.00083 * 5 3 2 31 31 H 1.09006 * 109.46896 * 179.97438 * 5 3 2 32 32 H 1.09001 * 109.47268 * 299.99623 * 5 3 2 33 33 H 1.08997 * 109.47002 * 294.99725 * 6 3 2 34 34 H 1.09003 * 109.47364 * 55.00097 * 6 3 2 35 35 H 1.08003 * 120.00385 * 359.97438 * 9 8 7 36 36 H 1.07997 * 120.00410 * 0.02562 * 11 10 9 37 37 H 1.08002 * 119.88676 * 180.22776 * 12 11 10 38 38 H 1.07999 * 119.88395 * 179.75865 * 13 12 11 39 39 H 0.97007 * 119.99540 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.10770 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4443 -0.1258 7 8 4.0315 2.7900 -0.2429 8 7 5.4376 2.9032 -0.3660 9 6 5.9849 4.0695 -0.4788 10 6 7.4512 4.1877 -0.6067 11 6 8.2498 3.0417 -0.6002 12 6 9.6195 3.1549 -0.7247 13 6 10.2067 4.4006 -0.8455 14 6 9.4213 5.5471 -0.8477 15 8 10.0030 6.7680 -0.9660 16 6 9.1799 7.8302 -1.0764 17 1 8.1119 7.6972 -0.9862 18 6 9.7045 9.0930 -1.3057 19 7 11.0054 9.2547 -1.4160 20 14 8.5641 10.5646 -1.4579 21 1 7.7879 10.7213 -0.2017 22 1 9.3671 11.7901 -1.7003 23 1 7.6308 10.3522 -2.5933 24 6 8.0440 5.4442 -0.7280 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.0699 1.5875 2.1492 31 1 1.9990 3.1540 1.3076 32 1 0.5490 2.1252 1.3970 33 1 4.0029 0.9836 0.7595 34 1 3.8570 0.8800 -1.0114 35 1 5.3695 4.9571 -0.4796 36 1 7.7951 2.0671 -0.5021 37 1 10.2352 2.2676 -0.7232 38 1 11.2795 4.4831 -0.9387 39 1 11.3724 10.1381 -1.5767 40 1 7.4321 6.3341 -0.7299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793146319.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:27 Heat of formation + Delta-G solvation = -8.447059 kcal Electronic energy + Delta-G solvation = -20024.288842 eV Core-core repulsion = 16806.304208 eV Total energy + Delta-G solvation = -3217.984634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.11231 -38.10160 -36.84706 -35.96499 -33.57062 -32.26428 -30.48320 -29.63012 -28.71617 -26.73791 -25.38182 -23.72998 -22.87457 -21.65273 -20.35586 -19.81376 -18.09043 -16.94812 -16.88112 -15.96135 -15.28138 -15.13056 -14.88374 -14.59784 -14.37310 -14.09982 -13.76740 -13.66669 -13.33981 -12.85970 -12.62323 -12.47006 -12.29840 -12.20274 -11.82119 -11.71467 -11.25485 -11.10145 -10.98248 -10.95635 -10.85550 -10.79712 -10.76050 -10.48983 -9.74098 -9.65969 -9.46310 -8.85761 -8.03419 -7.31953 -6.47990 -4.08059 1.30806 2.25899 2.76304 2.90706 3.12122 3.14072 3.15746 3.94063 4.54284 4.55423 4.60169 4.62983 5.00102 5.02018 5.05271 5.20750 5.21043 5.22828 5.34344 5.47002 5.52290 5.57267 5.68045 5.69120 5.73271 5.76374 5.82270 5.87993 6.02026 6.10758 6.12946 6.15499 6.45313 6.58104 6.70357 6.99342 7.16007 7.16678 7.32797 7.66859 7.74658 7.95186 8.97175 9.64981 10.69648 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.002974 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.612978 B = 9411.975370 C =10557.021497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.090 4.090 4 H 0.078 0.922 5 C -0.147 4.147 6 C 0.082 3.918 7 O -0.249 6.249 8 N -0.346 5.346 9 C 0.166 3.834 10 C -0.026 4.026 11 C -0.167 4.167 12 C -0.086 4.086 13 C -0.170 4.170 14 C 0.147 3.853 15 O -0.175 6.175 16 C -0.395 4.395 17 H 0.092 0.908 18 C 0.041 3.959 19 N -0.861 5.861 20 Si 0.940 3.060 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.197 4.197 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.271 0.729 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.181 -13.730 2.588 20.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.110 4.110 4 H 0.096 0.904 5 C -0.204 4.204 6 C 0.005 3.995 7 O -0.263 6.263 8 N -0.092 5.092 9 C -0.044 4.044 10 C -0.028 4.028 11 C -0.188 4.188 12 C -0.104 4.104 13 C -0.190 4.190 14 C 0.093 3.907 15 O -0.079 6.079 16 C -0.471 4.471 17 H 0.109 0.891 18 C -0.164 4.164 19 N -0.496 5.496 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.219 4.219 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.081 0.919 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.873 -14.268 2.600 20.773 hybrid contribution -0.928 1.392 -0.102 1.676 sum -15.801 -12.876 2.498 20.535 Atomic orbital electron populations 1.21800 0.95384 1.01652 1.02124 1.21490 0.96241 0.95325 1.02373 1.21200 0.93235 0.96901 0.99664 0.90374 1.21847 1.01024 1.01158 0.96372 1.22406 0.93172 0.83118 1.00759 1.89782 1.15251 1.28202 1.93027 1.76702 0.92307 1.24598 1.15560 1.24480 0.94646 0.94221 0.91014 1.18031 0.88101 0.93838 1.02816 1.20805 0.93361 0.97240 1.07383 1.20634 0.94362 0.96186 0.99222 1.20418 0.99689 0.90379 1.08518 1.19181 0.90744 0.87249 0.93497 1.84009 1.34732 1.10606 1.78531 1.21256 0.90199 0.84153 1.51492 0.89092 1.25277 0.96658 0.98116 0.96336 1.70028 1.10785 1.24052 1.44731 0.85793 0.79082 0.79441 0.79214 1.19456 1.20268 1.19456 1.21214 0.95111 0.96518 1.09059 0.92657 0.92328 0.92650 0.91702 0.91650 0.92747 0.92070 0.92443 0.92787 0.92839 0.86465 0.86530 0.86504 0.86145 0.91914 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.67 37.16 0.36 -0.62 16 2 C -0.12 -0.87 5.40 -26.73 -0.14 -1.01 16 3 C -0.09 -0.85 2.63 -90.62 -0.24 -1.09 16 4 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 5 C -0.15 -1.35 8.84 37.15 0.33 -1.02 16 6 C 0.08 0.99 5.78 37.16 0.21 1.20 16 7 O -0.25 -3.85 10.90 -11.47 -0.12 -3.98 16 8 N -0.35 -5.80 10.46 32.14 0.34 -5.47 16 9 C 0.17 2.78 10.90 -14.76 -0.16 2.62 16 10 C -0.03 -0.49 5.87 -105.05 -0.62 -1.11 16 11 C -0.17 -2.94 9.57 -39.13 -0.37 -3.32 16 12 C -0.09 -1.49 10.02 -39.67 -0.40 -1.88 16 13 C -0.17 -3.43 9.98 -39.31 -0.39 -3.82 16 14 C 0.15 3.40 6.64 -39.17 -0.26 3.14 16 15 O -0.18 -4.83 9.76 0.02 0.00 -4.83 16 16 C -0.39 -10.68 9.48 30.88 0.29 -10.39 16 17 H 0.09 2.25 5.20 -52.48 -0.27 1.97 16 18 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 19 N -0.86 -24.74 13.67 55.48 0.76 -23.98 16 20 Si 0.94 20.06 29.55 -169.99 -5.02 15.04 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 C -0.20 -4.11 8.90 -38.98 -0.35 -4.46 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.37 6.56 -51.93 -0.34 0.02 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.66 7.82 -51.93 -0.41 0.25 16 32 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.12 1.78 8.06 -52.48 -0.42 1.35 16 36 H 0.12 1.90 7.55 -52.49 -0.40 1.50 16 37 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 39 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.13 2.72 5.63 -52.49 -0.30 2.43 16 LS Contribution 341.81 15.07 5.15 5.15 Total: -1.00 -29.72 341.81 -6.57 -36.29 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -5.84 Total: 2.52 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -1.83 Total: -20.75 kcal Atomic # 7 Polarization: -30.54 SS G_CDS: 1.09 Total: -29.45 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.12 Total: -8.80 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.72 -6.57 -36.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793146319.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.842 kcal (2) G-P(sol) polarization free energy of solvation -29.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds