Wall clock time and date at job start Mon Mar 30 2020 02:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47051 * 2 1 4 4 H 1.08998 * 109.46889 * 304.99993 * 3 2 1 5 5 C 1.52992 * 109.46816 * 65.00442 * 3 2 1 6 6 C 1.52997 * 109.46824 * 185.00344 * 3 2 1 7 7 O 1.42907 * 109.46850 * 175.00160 * 6 3 2 8 8 N 1.41603 * 113.99860 * 180.02562 * 7 6 3 9 9 C 1.29325 * 119.99710 * 180.02562 * 8 7 6 10 10 C 1.47662 * 119.99804 * 179.97438 * 9 8 7 11 11 C 1.39682 * 120.11403 * 359.72474 * 10 9 8 12 12 C 1.37994 * 119.98301 * 179.76532 * 11 10 9 13 13 C 1.38242 * 120.22557 * 0.50874 * 12 11 10 14 14 C 1.38965 * 120.23154 * 359.74449 * 13 12 11 15 15 O 1.35758 * 119.99505 * 179.97438 * 14 13 12 16 16 C 1.34830 * 117.00189 * 174.47807 * 15 14 13 17 17 H 1.08006 * 119.99423 * 5.06426 * 16 15 14 18 18 C 1.38651 * 120.00420 * 185.05843 * 16 15 14 19 19 N 1.31560 * 119.99508 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00229 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47097 * 60.00528 * 20 18 16 22 22 H 1.48505 * 109.47209 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47191 * 300.00338 * 20 18 16 24 24 C 1.38634 * 120.00756 * 0.02562 * 14 13 12 25 25 H 1.08998 * 109.46875 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46842 * 299.99661 * 1 2 3 27 27 H 1.09001 * 109.47601 * 59.99455 * 1 2 3 28 28 H 1.09001 * 109.46842 * 240.00339 * 2 1 3 29 29 H 1.08992 * 109.47487 * 120.00354 * 2 1 3 30 30 H 1.08998 * 109.47758 * 60.00083 * 5 3 2 31 31 H 1.09006 * 109.46896 * 179.97438 * 5 3 2 32 32 H 1.09001 * 109.47268 * 299.99623 * 5 3 2 33 33 H 1.08997 * 109.47002 * 294.99725 * 6 3 2 34 34 H 1.09003 * 109.47364 * 55.00097 * 6 3 2 35 35 H 1.08003 * 120.00385 * 359.97438 * 9 8 7 36 36 H 1.07997 * 120.00410 * 0.02562 * 11 10 9 37 37 H 1.08002 * 119.88676 * 180.22776 * 12 11 10 38 38 H 1.07999 * 119.88395 * 179.75865 * 13 12 11 39 39 H 0.97007 * 119.99540 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.10770 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4443 -0.1258 7 8 4.0315 2.7900 -0.2429 8 7 5.4376 2.9032 -0.3660 9 6 5.9849 4.0695 -0.4788 10 6 7.4512 4.1877 -0.6067 11 6 8.2498 3.0417 -0.6002 12 6 9.6195 3.1549 -0.7247 13 6 10.2067 4.4006 -0.8455 14 6 9.4213 5.5471 -0.8477 15 8 10.0030 6.7680 -0.9660 16 6 9.1799 7.8302 -1.0764 17 1 8.1119 7.6972 -0.9862 18 6 9.7045 9.0930 -1.3057 19 7 11.0054 9.2547 -1.4160 20 14 8.5641 10.5646 -1.4579 21 1 7.7879 10.7213 -0.2017 22 1 9.3671 11.7901 -1.7003 23 1 7.6308 10.3522 -2.5933 24 6 8.0440 5.4442 -0.7280 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.0699 1.5875 2.1492 31 1 1.9990 3.1540 1.3076 32 1 0.5490 2.1252 1.3970 33 1 4.0029 0.9836 0.7595 34 1 3.8570 0.8800 -1.0114 35 1 5.3695 4.9571 -0.4796 36 1 7.7951 2.0671 -0.5021 37 1 10.2352 2.2676 -0.7232 38 1 11.2795 4.4831 -0.9387 39 1 11.3724 10.1381 -1.5767 40 1 7.4321 6.3341 -0.7299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793146319.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:26 Heat of formation + Delta-G solvation = -24.250365 kcal Electronic energy + Delta-G solvation = -20024.974125 eV Core-core repulsion = 16806.304208 eV Total energy + Delta-G solvation = -3218.669916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79454 -39.16731 -38.39083 -37.04278 -34.88970 -34.15905 -31.68371 -30.75021 -30.19347 -27.65669 -27.25685 -24.90139 -23.87462 -23.27514 -21.48204 -20.91967 -19.85086 -18.59658 -18.24225 -16.90417 -16.76894 -16.41209 -16.20564 -15.98799 -15.67129 -15.52625 -15.17763 -14.95078 -14.40184 -14.19384 -14.09818 -13.65664 -13.52399 -13.18769 -12.94272 -12.80385 -12.59628 -12.49254 -12.40510 -12.19655 -12.12927 -11.79996 -11.63158 -11.51237 -11.34162 -10.96892 -10.94319 -10.70395 -9.53082 -9.01798 -8.44359 -6.12802 -0.16425 0.68618 1.38261 1.42402 1.52023 1.53618 1.57540 2.19890 2.87116 3.18957 3.49607 3.64531 3.82558 3.87506 3.91626 4.13214 4.26996 4.34443 4.37292 4.42778 4.53969 4.61158 4.61581 4.67575 4.74212 4.81917 5.00571 5.03550 5.04834 5.10479 5.11841 5.17761 5.18643 5.27895 5.42156 5.50024 5.62676 5.63193 5.65912 6.02750 6.10887 6.45365 7.00350 7.78842 8.78162 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.002974 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.612978 B = 9411.975370 C =10557.021497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.085 4.085 4 H 0.074 0.926 5 C -0.145 4.145 6 C 0.075 3.925 7 O -0.255 6.255 8 N -0.348 5.348 9 C 0.159 3.841 10 C -0.025 4.025 11 C -0.152 4.152 12 C -0.072 4.072 13 C -0.178 4.178 14 C 0.112 3.888 15 O -0.227 6.227 16 C -0.414 4.414 17 H 0.104 0.896 18 C -0.021 4.021 19 N -0.919 5.919 20 Si 1.015 2.985 21 H -0.257 1.257 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.203 4.203 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.160 0.840 38 H 0.123 0.877 39 H 0.272 0.728 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.613 -15.846 2.871 23.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.105 4.105 4 H 0.092 0.908 5 C -0.203 4.203 6 C -0.001 4.001 7 O -0.271 6.271 8 N -0.092 5.092 9 C -0.051 4.051 10 C -0.026 4.026 11 C -0.173 4.173 12 C -0.089 4.089 13 C -0.198 4.198 14 C 0.061 3.939 15 O -0.133 6.133 16 C -0.490 4.490 17 H 0.122 0.878 18 C -0.219 4.219 19 N -0.557 5.557 20 Si 0.834 3.166 21 H -0.181 1.181 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.224 4.224 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.178 0.822 38 H 0.141 0.859 39 H 0.081 0.919 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.322 -16.446 2.892 24.060 hybrid contribution -0.300 1.640 -0.142 1.673 sum -17.622 -14.806 2.750 23.180 Atomic orbital electron populations 1.21800 0.94489 1.02381 1.02222 1.21479 0.96943 0.93771 1.02853 1.21216 0.91321 0.98350 0.99583 0.90778 1.21839 1.02082 0.99963 0.96382 1.22713 0.94745 0.81622 1.01044 1.89802 1.13966 1.30463 1.92858 1.76565 0.93657 1.24555 1.14443 1.24344 0.93857 0.95016 0.91835 1.18149 0.89396 0.93179 1.01893 1.21207 0.93519 0.97831 1.04732 1.21062 0.94727 0.96322 0.96823 1.20708 0.99985 0.90730 1.08420 1.19714 0.92262 0.86932 0.94973 1.83977 1.36019 1.11997 1.81343 1.21773 0.90992 0.84733 1.51478 0.87847 1.26528 0.98375 1.01141 0.95827 1.70175 1.13064 1.24815 1.47628 0.84695 0.76928 0.75089 0.79854 1.18142 1.19857 1.18207 1.21229 0.94301 0.97597 1.09292 0.91654 0.92099 0.92714 0.91328 0.91109 0.92439 0.93934 0.90866 0.92496 0.92472 0.85113 0.84248 0.82207 0.85872 0.91879 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.67 71.98 0.70 -0.86 16 2 C -0.11 -1.38 5.40 30.60 0.17 -1.22 16 3 C -0.08 -1.42 2.63 -10.80 -0.03 -1.45 16 4 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 5 C -0.15 -2.40 8.84 71.98 0.64 -1.77 16 6 C 0.08 1.64 5.78 71.98 0.42 2.05 16 7 O -0.26 -7.40 10.90 -38.79 -0.42 -7.82 16 8 N -0.35 -10.87 10.46 -52.24 -0.55 -11.42 16 9 C 0.16 5.06 10.90 87.55 0.95 6.01 16 10 C -0.02 -0.88 5.87 -20.14 -0.12 -1.00 16 11 C -0.15 -4.92 9.57 22.56 0.22 -4.70 16 12 C -0.07 -2.28 10.02 22.21 0.22 -2.05 16 13 C -0.18 -7.14 9.98 22.45 0.22 -6.92 16 14 C 0.11 5.31 6.64 22.54 0.15 5.46 16 15 O -0.23 -13.15 9.76 -22.83 -0.22 -13.37 16 16 C -0.41 -23.31 9.48 67.92 0.64 -22.66 16 17 H 0.10 5.28 5.20 -2.91 -0.02 5.26 16 18 C -0.02 -1.16 5.49 84.83 0.47 -0.69 16 19 N -0.92 -55.34 13.67 21.61 0.30 -55.04 16 20 Si 1.01 41.94 29.55 68.60 2.03 43.97 16 21 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 23 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 24 C -0.20 -8.50 8.90 22.66 0.20 -8.30 16 25 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.06 0.60 6.56 -2.39 -0.02 0.58 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.04 0.86 7.82 -2.38 -0.02 0.84 16 32 H 0.07 0.97 6.57 -2.39 -0.02 0.95 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 36 H 0.14 3.95 7.55 -2.91 -0.02 3.93 16 37 H 0.16 3.74 8.06 -2.91 -0.02 3.71 16 38 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 39 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 40 H 0.13 5.43 5.63 -2.91 -0.02 5.41 16 Total: -1.00 -66.91 341.81 7.00 -59.91 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 1.02 Total: 21.88 kcal Atomic # 6 Polarization: -42.95 SS G_CDS: 4.85 Total: -38.10 kcal Atomic # 7 Polarization: -66.21 SS G_CDS: -0.25 Total: -66.46 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.65 Total: -21.19 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -66.91 7.00 -59.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793146319.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.657 kcal (2) G-P(sol) polarization free energy of solvation -66.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds