Wall clock time and date at job start Mon Mar 30 2020 02:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47068 * 2 1 4 4 H 1.09000 * 109.46940 * 54.99611 * 3 2 1 5 5 C 1.52999 * 109.47131 * 294.99731 * 3 2 1 6 6 C 1.53003 * 109.47072 * 174.99404 * 3 2 1 7 7 O 1.42892 * 109.46939 * 184.99739 * 6 3 2 8 8 N 1.41600 * 113.99922 * 180.02562 * 7 6 3 9 9 C 1.29323 * 120.00370 * 180.02562 * 8 7 6 10 10 C 1.47654 * 120.00444 * 179.97438 * 9 8 7 11 11 C 1.39684 * 120.11505 * 359.72497 * 10 9 8 12 12 C 1.37989 * 119.98754 * 179.70039 * 11 10 9 13 13 C 1.38241 * 120.22584 * 0.59545 * 12 11 10 14 14 C 1.38964 * 120.23222 * 359.67591 * 13 12 11 15 15 O 1.35755 * 119.99994 * 180.02562 * 14 13 12 16 16 C 1.34824 * 117.00238 * 174.48476 * 15 14 13 17 17 H 1.08001 * 120.00600 * 5.05426 * 16 15 14 18 18 C 1.38661 * 119.99996 * 185.06298 * 16 15 14 19 19 N 1.31552 * 120.00005 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99796 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47496 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47311 * 119.99820 * 20 18 16 23 23 H 1.48507 * 109.46871 * 239.99548 * 20 18 16 24 24 C 1.38637 * 120.00587 * 0.02562 * 14 13 12 25 25 H 1.09007 * 109.47006 * 60.00274 * 1 2 3 26 26 H 1.09004 * 109.47356 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47649 * 300.00063 * 1 2 3 28 28 H 1.09000 * 109.47341 * 239.99530 * 2 1 3 29 29 H 1.09007 * 109.47006 * 119.99726 * 2 1 3 30 30 H 1.09004 * 109.46932 * 300.00264 * 5 3 2 31 31 H 1.08997 * 109.46628 * 59.99850 * 5 3 2 32 32 H 1.08994 * 109.46868 * 180.02562 * 5 3 2 33 33 H 1.09004 * 109.46847 * 64.99852 * 6 3 2 34 34 H 1.08995 * 109.47229 * 305.00404 * 6 3 2 35 35 H 1.08002 * 119.99861 * 359.97438 * 9 8 7 36 36 H 1.07998 * 120.00311 * 359.97438 * 11 10 9 37 37 H 1.08005 * 119.88976 * 180.27330 * 12 11 10 38 38 H 1.08002 * 119.88700 * 179.70138 * 13 12 11 39 39 H 0.96996 * 120.00003 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.10965 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1259 7 8 4.0314 2.7899 0.2429 8 7 5.4376 2.9032 0.3649 9 6 5.9849 4.0694 0.4786 10 6 7.4511 4.1876 0.6064 11 6 8.2490 3.0411 0.6106 12 6 9.6195 3.1549 0.7240 13 6 10.2066 4.4005 0.8460 14 6 9.4213 5.5469 0.8486 15 8 10.0029 6.7678 0.9682 16 6 9.1986 7.8433 0.8490 17 1 8.1314 7.7111 0.7484 18 6 9.7415 9.1191 0.8554 19 7 11.0414 9.2802 0.9783 20 14 8.6271 10.6092 0.6910 21 1 7.2166 10.1614 0.5682 22 1 8.7708 11.4699 1.8926 23 1 9.0080 11.3811 -0.5191 24 6 8.0439 5.4441 0.7291 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.0699 1.5874 -2.1492 31 1 0.5490 2.1252 -1.3969 32 1 1.9990 3.1540 -1.3075 33 1 4.0030 0.9835 -0.7595 34 1 3.8569 0.8801 1.0114 35 1 5.3695 4.9569 0.4801 36 1 7.7936 2.0659 0.5207 37 1 10.2352 2.2676 0.7226 38 1 11.2794 4.4829 0.9392 39 1 11.4211 10.1727 0.9831 40 1 7.4320 6.3340 0.7305 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793146322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:30 Heat of formation + Delta-G solvation = -8.582978 kcal Electronic energy + Delta-G solvation = -20026.115771 eV Core-core repulsion = 16808.125243 eV Total energy + Delta-G solvation = -3217.990527 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.11405 -38.10257 -36.84860 -35.96590 -33.57212 -32.26685 -30.48330 -29.63036 -28.71791 -26.73785 -25.38614 -23.73060 -22.87501 -21.65397 -20.35581 -19.81490 -18.09298 -16.94918 -16.88473 -15.96131 -15.28249 -15.13131 -14.88711 -14.60038 -14.36297 -14.10044 -13.73542 -13.70611 -13.32980 -12.86540 -12.61307 -12.49123 -12.29683 -12.20358 -11.81960 -11.72204 -11.26688 -11.10503 -11.00106 -10.95338 -10.83812 -10.79676 -10.76680 -10.45399 -9.73836 -9.66302 -9.45705 -8.86842 -8.03490 -7.32073 -6.48496 -4.08344 1.30698 2.25672 2.76269 2.90417 3.11731 3.12902 3.17831 3.93639 4.54178 4.55405 4.60136 4.63009 5.00102 5.01998 5.05041 5.20665 5.21009 5.22813 5.34347 5.47006 5.52305 5.57239 5.68071 5.69070 5.73278 5.76341 5.82331 5.87982 6.01992 6.10676 6.12952 6.15549 6.45306 6.58027 6.70205 6.99666 7.16075 7.16625 7.32895 7.66733 7.74649 7.94974 8.96981 9.64967 10.69358 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021928 B = 0.002980 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.600142 B = 9395.142091 C =10558.310555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.090 4.090 4 H 0.078 0.922 5 C -0.147 4.147 6 C 0.082 3.918 7 O -0.249 6.249 8 N -0.346 5.346 9 C 0.166 3.834 10 C -0.026 4.026 11 C -0.167 4.167 12 C -0.086 4.086 13 C -0.170 4.170 14 C 0.147 3.853 15 O -0.176 6.176 16 C -0.394 4.394 17 H 0.093 0.907 18 C 0.040 3.960 19 N -0.861 5.861 20 Si 0.940 3.060 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.197 4.197 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.270 0.730 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.242 -13.795 -2.105 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.110 4.110 4 H 0.096 0.904 5 C -0.204 4.204 6 C 0.005 3.995 7 O -0.263 6.263 8 N -0.092 5.092 9 C -0.044 4.044 10 C -0.028 4.028 11 C -0.188 4.188 12 C -0.104 4.104 13 C -0.190 4.190 14 C 0.093 3.907 15 O -0.079 6.079 16 C -0.470 4.470 17 H 0.110 0.890 18 C -0.164 4.164 19 N -0.496 5.496 20 Si 0.765 3.235 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.219 4.219 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.080 0.920 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.943 -14.339 -2.111 20.818 hybrid contribution -0.900 1.408 -0.061 1.672 sum -15.843 -12.931 -2.173 20.565 Atomic orbital electron populations 1.21800 0.95384 1.01653 1.02123 1.21490 0.96240 0.95325 1.02373 1.21202 0.93233 0.96899 0.99665 0.90378 1.21847 1.01024 1.01160 0.96372 1.22404 0.93173 0.83119 1.00759 1.89779 1.15240 1.28203 1.93035 1.76699 0.92307 1.24600 1.15562 1.24477 0.94644 0.94222 0.91016 1.18031 0.88112 0.93825 1.02823 1.20806 0.93360 0.97220 1.07387 1.20634 0.94343 0.96178 0.99253 1.20420 0.99607 0.90475 1.08494 1.19181 0.90764 0.87395 0.93319 1.84008 1.36264 1.10063 1.77601 1.21354 0.90670 0.82562 1.52414 0.88979 1.25285 0.96535 0.98122 0.96495 1.70039 1.10427 1.23429 1.45686 0.85655 0.79333 0.80192 0.78307 1.19046 1.20129 1.20126 1.21220 0.95052 0.96530 1.09088 0.92333 0.92657 0.92646 0.91649 0.91703 0.92745 0.92442 0.92067 0.92786 0.92845 0.86469 0.86529 0.86500 0.86142 0.92014 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.67 37.16 0.36 -0.62 16 2 C -0.12 -0.86 5.40 -26.73 -0.14 -1.01 16 3 C -0.09 -0.85 2.63 -90.62 -0.24 -1.09 16 4 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 5 C -0.15 -1.35 8.85 37.16 0.33 -1.03 16 6 C 0.08 0.99 5.78 37.16 0.21 1.20 16 7 O -0.25 -3.85 10.89 -11.47 -0.12 -3.98 16 8 N -0.35 -5.80 10.46 32.14 0.34 -5.47 16 9 C 0.17 2.79 10.90 -14.76 -0.16 2.63 16 10 C -0.03 -0.49 5.87 -105.05 -0.62 -1.11 16 11 C -0.17 -2.94 9.57 -39.13 -0.37 -3.31 16 12 C -0.09 -1.49 10.02 -39.67 -0.40 -1.88 16 13 C -0.17 -3.42 9.98 -39.31 -0.39 -3.81 16 14 C 0.15 3.41 6.64 -39.17 -0.26 3.15 16 15 O -0.18 -4.84 9.76 0.05 0.00 -4.84 16 16 C -0.39 -10.65 9.48 30.89 0.29 -10.36 16 17 H 0.09 2.29 5.20 -52.49 -0.27 2.01 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.74 13.67 55.48 0.76 -23.98 16 20 Si 0.94 20.08 29.55 -169.99 -5.02 15.06 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 24 C -0.20 -4.11 8.90 -38.98 -0.35 -4.46 16 25 H 0.06 0.37 6.57 -51.92 -0.34 0.02 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.45 6.56 -51.93 -0.34 0.10 16 32 H 0.06 0.66 7.82 -51.93 -0.41 0.25 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.12 1.90 7.55 -52.49 -0.40 1.50 16 37 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 38 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 39 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.13 2.74 5.63 -52.49 -0.30 2.44 16 LS Contribution 341.81 15.07 5.15 5.15 Total: -1.00 -29.74 341.81 -6.57 -36.31 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.84 Total: 2.46 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -1.83 Total: -20.72 kcal Atomic # 7 Polarization: -30.54 SS G_CDS: 1.09 Total: -29.45 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.12 Total: -8.82 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.74 -6.57 -36.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793146322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.728 kcal (2) G-P(sol) polarization free energy of solvation -29.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds