Wall clock time and date at job start Mon Mar 30 2020 02:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47068 * 2 1 4 4 H 1.09000 * 109.46940 * 54.99611 * 3 2 1 5 5 C 1.52999 * 109.47131 * 294.99731 * 3 2 1 6 6 C 1.53003 * 109.47072 * 174.99404 * 3 2 1 7 7 O 1.42892 * 109.46939 * 184.99739 * 6 3 2 8 8 N 1.41600 * 113.99922 * 180.02562 * 7 6 3 9 9 C 1.29323 * 120.00370 * 180.02562 * 8 7 6 10 10 C 1.47654 * 120.00444 * 179.97438 * 9 8 7 11 11 C 1.39684 * 120.11505 * 359.72497 * 10 9 8 12 12 C 1.37989 * 119.98754 * 179.70039 * 11 10 9 13 13 C 1.38241 * 120.22584 * 0.59545 * 12 11 10 14 14 C 1.38964 * 120.23222 * 359.67591 * 13 12 11 15 15 O 1.35755 * 119.99994 * 180.02562 * 14 13 12 16 16 C 1.34824 * 117.00238 * 174.48476 * 15 14 13 17 17 H 1.08001 * 120.00600 * 5.05426 * 16 15 14 18 18 C 1.38661 * 119.99996 * 185.06298 * 16 15 14 19 19 N 1.31552 * 120.00005 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99796 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47496 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47311 * 119.99820 * 20 18 16 23 23 H 1.48507 * 109.46871 * 239.99548 * 20 18 16 24 24 C 1.38637 * 120.00587 * 0.02562 * 14 13 12 25 25 H 1.09007 * 109.47006 * 60.00274 * 1 2 3 26 26 H 1.09004 * 109.47356 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47649 * 300.00063 * 1 2 3 28 28 H 1.09000 * 109.47341 * 239.99530 * 2 1 3 29 29 H 1.09007 * 109.47006 * 119.99726 * 2 1 3 30 30 H 1.09004 * 109.46932 * 300.00264 * 5 3 2 31 31 H 1.08997 * 109.46628 * 59.99850 * 5 3 2 32 32 H 1.08994 * 109.46868 * 180.02562 * 5 3 2 33 33 H 1.09004 * 109.46847 * 64.99852 * 6 3 2 34 34 H 1.08995 * 109.47229 * 305.00404 * 6 3 2 35 35 H 1.08002 * 119.99861 * 359.97438 * 9 8 7 36 36 H 1.07998 * 120.00311 * 359.97438 * 11 10 9 37 37 H 1.08005 * 119.88976 * 180.27330 * 12 11 10 38 38 H 1.08002 * 119.88700 * 179.70138 * 13 12 11 39 39 H 0.96996 * 120.00003 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.10965 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1259 7 8 4.0314 2.7899 0.2429 8 7 5.4376 2.9032 0.3649 9 6 5.9849 4.0694 0.4786 10 6 7.4511 4.1876 0.6064 11 6 8.2490 3.0411 0.6106 12 6 9.6195 3.1549 0.7240 13 6 10.2066 4.4005 0.8460 14 6 9.4213 5.5469 0.8486 15 8 10.0029 6.7678 0.9682 16 6 9.1986 7.8433 0.8490 17 1 8.1314 7.7111 0.7484 18 6 9.7415 9.1191 0.8554 19 7 11.0414 9.2802 0.9783 20 14 8.6271 10.6092 0.6910 21 1 7.2166 10.1614 0.5682 22 1 8.7708 11.4699 1.8926 23 1 9.0080 11.3811 -0.5191 24 6 8.0439 5.4441 0.7291 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.0699 1.5874 -2.1492 31 1 0.5490 2.1252 -1.3969 32 1 1.9990 3.1540 -1.3075 33 1 4.0030 0.9835 -0.7595 34 1 3.8569 0.8801 1.0114 35 1 5.3695 4.9569 0.4801 36 1 7.7936 2.0659 0.5207 37 1 10.2352 2.2676 0.7226 38 1 11.2794 4.4829 0.9392 39 1 11.4211 10.1727 0.9831 40 1 7.4320 6.3340 0.7305 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793146322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:29 Heat of formation + Delta-G solvation = -24.401312 kcal Electronic energy + Delta-G solvation = -20026.801705 eV Core-core repulsion = 16808.125243 eV Total energy + Delta-G solvation = -3218.676462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.79640 -39.16923 -38.39274 -37.04351 -34.89177 -34.16181 -31.68425 -30.75068 -30.19464 -27.65850 -27.26155 -24.90248 -23.87485 -23.27633 -21.48384 -20.91985 -19.85404 -18.60212 -18.24417 -16.90406 -16.76884 -16.41562 -16.21129 -15.98019 -15.67566 -15.51626 -15.17893 -14.95690 -14.40920 -14.18889 -14.10755 -13.66661 -13.51650 -13.19766 -12.94255 -12.83032 -12.62217 -12.47844 -12.39844 -12.19917 -12.07558 -11.80043 -11.63096 -11.51352 -11.33536 -10.97102 -10.95092 -10.71651 -9.53149 -9.01869 -8.44896 -6.13086 -0.16556 0.68427 1.38318 1.40993 1.50761 1.55717 1.57476 2.19303 2.86916 3.18761 3.49416 3.64433 3.82491 3.87434 3.91626 4.13166 4.26907 4.34412 4.37266 4.42749 4.53939 4.61132 4.61530 4.67542 4.74196 4.81864 5.00566 5.03512 5.04792 5.10534 5.11865 5.17972 5.18570 5.27867 5.42118 5.50014 5.62631 5.63185 5.65860 6.02842 6.10806 6.45266 7.00151 7.78818 8.78150 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021928 B = 0.002980 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.600142 B = 9395.142091 C =10558.310555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.085 4.085 4 H 0.074 0.926 5 C -0.146 4.146 6 C 0.075 3.925 7 O -0.255 6.255 8 N -0.348 5.348 9 C 0.159 3.841 10 C -0.025 4.025 11 C -0.152 4.152 12 C -0.072 4.072 13 C -0.178 4.178 14 C 0.112 3.888 15 O -0.227 6.227 16 C -0.412 4.412 17 H 0.104 0.896 18 C -0.022 4.022 19 N -0.919 5.919 20 Si 1.015 2.985 21 H -0.250 1.250 22 H -0.270 1.270 23 H -0.270 1.270 24 C -0.203 4.203 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.160 0.840 38 H 0.123 0.877 39 H 0.272 0.728 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.655 -15.923 -2.503 23.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.105 4.105 4 H 0.092 0.908 5 C -0.203 4.203 6 C -0.001 4.001 7 O -0.271 6.271 8 N -0.092 5.092 9 C -0.050 4.050 10 C -0.026 4.026 11 C -0.173 4.173 12 C -0.089 4.089 13 C -0.198 4.198 14 C 0.061 3.939 15 O -0.134 6.134 16 C -0.488 4.488 17 H 0.122 0.878 18 C -0.219 4.219 19 N -0.557 5.557 20 Si 0.835 3.165 21 H -0.173 1.173 22 H -0.195 1.195 23 H -0.196 1.196 24 C -0.224 4.224 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.148 0.852 36 H 0.158 0.842 37 H 0.178 0.822 38 H 0.141 0.859 39 H 0.081 0.919 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.374 -16.530 -2.510 24.112 hybrid contribution -0.276 1.662 0.040 1.685 sum -17.651 -14.868 -2.471 23.210 Atomic orbital electron populations 1.21800 0.94489 1.02383 1.02221 1.21480 0.96942 0.93768 1.02856 1.21218 0.91320 0.98352 0.99579 0.90768 1.21839 1.02083 0.99960 0.96391 1.22711 0.94745 0.81621 1.01047 1.89799 1.13956 1.30470 1.92865 1.76562 0.93655 1.24549 1.14438 1.24338 0.93861 0.95003 0.91847 1.18147 0.89398 0.93171 1.01903 1.21206 0.93520 0.97809 1.04729 1.21062 0.94711 0.96320 0.96837 1.20709 0.99915 0.90817 1.08381 1.19711 0.92239 0.87042 0.94865 1.83975 1.37561 1.11408 1.80431 1.21850 0.91415 0.83156 1.52370 0.87828 1.26530 0.98156 1.01221 0.96015 1.70178 1.12689 1.24234 1.48619 0.84566 0.77790 0.75730 0.78401 1.17329 1.19520 1.19553 1.21227 0.94243 0.97589 1.09346 0.92112 0.91652 0.92701 0.91117 0.91314 0.92447 0.90863 0.93942 0.92511 0.92454 0.85153 0.84243 0.82197 0.85863 0.91882 0.85212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.67 71.98 0.70 -0.86 16 2 C -0.11 -1.38 5.40 30.59 0.17 -1.22 16 3 C -0.08 -1.42 2.63 -10.79 -0.03 -1.45 16 4 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 5 C -0.15 -2.41 8.85 71.98 0.64 -1.77 16 6 C 0.08 1.64 5.78 71.98 0.42 2.05 16 7 O -0.26 -7.41 10.89 -38.79 -0.42 -7.83 16 8 N -0.35 -10.87 10.46 -52.24 -0.55 -11.42 16 9 C 0.16 5.07 10.90 87.55 0.95 6.02 16 10 C -0.02 -0.88 5.87 -20.14 -0.12 -1.00 16 11 C -0.15 -4.91 9.57 22.56 0.22 -4.69 16 12 C -0.07 -2.27 10.02 22.21 0.22 -2.05 16 13 C -0.18 -7.12 9.98 22.44 0.22 -6.90 16 14 C 0.11 5.32 6.64 22.54 0.15 5.47 16 15 O -0.23 -13.16 9.76 -22.74 -0.22 -13.38 16 16 C -0.41 -23.19 9.48 67.92 0.64 -22.55 16 17 H 0.10 5.31 5.20 -2.91 -0.02 5.29 16 18 C -0.02 -1.20 5.49 84.84 0.47 -0.73 16 19 N -0.92 -55.34 13.67 21.61 0.30 -55.05 16 20 Si 1.02 42.02 29.55 68.60 2.03 44.04 16 21 H -0.25 -9.50 7.11 99.48 0.71 -8.80 16 22 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 23 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 24 C -0.20 -8.50 8.90 22.66 0.20 -8.30 16 25 H 0.06 0.60 6.57 -2.38 -0.02 0.58 16 26 H 0.06 0.55 8.14 -2.38 -0.02 0.54 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.07 0.97 6.56 -2.39 -0.02 0.96 16 32 H 0.04 0.86 7.82 -2.39 -0.02 0.84 16 33 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 36 H 0.14 3.95 7.55 -2.91 -0.02 3.92 16 37 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 38 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 39 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 40 H 0.13 5.43 5.63 -2.91 -0.02 5.41 16 Total: -1.00 -66.93 341.81 7.00 -59.93 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 1.02 Total: 21.68 kcal Atomic # 6 Polarization: -42.83 SS G_CDS: 4.85 Total: -37.98 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: -0.25 Total: -66.47 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.64 Total: -21.21 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -66.93 7.00 -59.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793146322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.529 kcal (2) G-P(sol) polarization free energy of solvation -66.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds