Wall clock time and date at job start Mon Mar 30 2020 02:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47166 * 2 1 4 4 H 1.08996 * 109.47186 * 305.00335 * 3 2 1 5 5 C 1.52996 * 109.47083 * 65.00289 * 3 2 1 6 6 C 1.53005 * 109.46953 * 185.00252 * 3 2 1 7 7 O 1.42905 * 109.46887 * 175.00440 * 6 3 2 8 8 N 1.41599 * 113.99732 * 180.02562 * 7 6 3 9 9 C 1.29417 * 119.99858 * 179.97438 * 8 7 6 10 10 C 1.47494 * 119.99997 * 179.72300 * 9 8 7 11 11 C 1.39746 * 120.07793 * 359.97438 * 10 9 8 12 12 C 1.37723 * 119.91551 * 179.74376 * 11 10 9 13 13 C 1.39080 * 120.08139 * 0.50706 * 12 11 10 14 14 O 1.35642 * 119.92306 * 179.74026 * 13 12 11 15 15 C 1.34804 * 117.00014 * 174.47118 * 14 13 12 16 16 H 1.08000 * 120.00367 * 5.06255 * 15 14 13 17 17 C 1.38673 * 119.99983 * 185.06094 * 15 14 13 18 18 N 1.31534 * 120.00217 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99637 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46988 * 90.00282 * 19 17 15 21 21 H 1.48510 * 109.47015 * 210.00226 * 19 17 15 22 22 H 1.48501 * 109.47522 * 330.00341 * 19 17 15 23 23 C 1.39077 * 120.16071 * 359.76863 * 13 12 11 24 24 C 1.37725 * 120.07827 * 359.97438 * 23 13 12 25 25 H 1.08998 * 109.47017 * 59.99938 * 1 2 3 26 26 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46977 * 299.99488 * 1 2 3 28 28 H 1.09003 * 109.47196 * 240.00116 * 2 1 3 29 29 H 1.09004 * 109.47232 * 120.00451 * 2 1 3 30 30 H 1.09004 * 109.47410 * 60.00010 * 5 3 2 31 31 H 1.08999 * 109.47338 * 179.97438 * 5 3 2 32 32 H 1.09003 * 109.47282 * 299.99968 * 5 3 2 33 33 H 1.08994 * 109.47357 * 54.99792 * 6 3 2 34 34 H 1.09003 * 109.47060 * 294.99664 * 6 3 2 35 35 H 1.08009 * 119.99575 * 359.97438 * 9 8 7 36 36 H 1.07998 * 120.04145 * 359.97438 * 11 10 9 37 37 H 1.07995 * 119.95931 * 180.23418 * 12 11 10 38 38 H 0.97003 * 120.00292 * 179.97438 * 18 17 15 39 39 H 1.07995 * 119.96170 * 179.97438 * 23 13 12 40 40 H 1.08003 * 120.04069 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4442 -0.1258 7 8 4.0316 2.7899 -0.2428 8 7 5.4376 2.9031 -0.3659 9 6 5.9853 4.0701 -0.4797 10 6 7.4504 4.1884 -0.6018 11 6 8.2488 3.0415 -0.5942 12 6 9.6161 3.1555 -0.7137 13 6 10.2033 4.4108 -0.8312 14 8 11.5506 4.5197 -0.9435 15 6 12.0484 5.7520 -1.1689 16 1 11.3902 6.6083 -1.1708 17 6 13.4056 5.9203 -1.3985 18 7 13.8914 7.1228 -1.6180 19 14 14.5441 4.4393 -1.3945 20 1 14.6341 3.8805 -2.7674 21 1 15.8954 4.8550 -0.9396 22 1 14.0081 3.4052 -0.4733 23 6 9.4124 5.5548 -0.8334 24 6 8.0440 5.4481 -0.7196 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.0700 1.5874 2.1492 31 1 1.9990 3.1540 1.3076 32 1 0.5490 2.1252 1.3970 33 1 3.8571 0.8800 -1.0113 34 1 4.0030 0.9835 0.7596 35 1 5.3698 4.9576 -0.4813 36 1 7.7938 2.0667 -0.4985 37 1 10.2334 2.2694 -0.7117 38 1 14.8408 7.2405 -1.7782 39 1 9.8717 6.5279 -0.9245 40 1 7.4304 6.3369 -0.7210 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793164676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:33 Heat of formation + Delta-G solvation = -8.760099 kcal Electronic energy + Delta-G solvation = -19842.564842 eV Core-core repulsion = 16624.566634 eV Total energy + Delta-G solvation = -3217.998208 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.30763 -38.08017 -37.09492 -35.95366 -33.36932 -32.47832 -30.46863 -30.21370 -28.70202 -26.70102 -25.54587 -23.49363 -22.47379 -22.09563 -20.35015 -19.81414 -18.08454 -17.44788 -16.91097 -15.98268 -15.56528 -14.94439 -14.82225 -14.71617 -14.21779 -14.02781 -13.84427 -13.77299 -13.33620 -12.81343 -12.68449 -12.41373 -12.33942 -12.29220 -12.22846 -11.88085 -11.39769 -11.25939 -11.04350 -10.96971 -10.92680 -10.80613 -10.73558 -10.27095 -9.66377 -9.55494 -9.49480 -8.92273 -8.41327 -7.33643 -6.56022 -4.21020 1.39219 2.07365 2.84466 2.89133 3.15713 3.19410 3.32818 4.12788 4.45321 4.55042 4.61035 4.62810 4.70139 4.98117 4.99739 5.03733 5.20486 5.22293 5.34309 5.43547 5.52999 5.53761 5.62805 5.65029 5.68053 5.72766 5.76713 5.83723 5.99567 6.07225 6.11986 6.13685 6.38646 6.51696 6.67181 6.95680 7.05024 7.13458 7.45037 7.66191 7.82614 7.88651 8.77832 9.38132 10.50412 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.053732 B = 0.002419 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.981462 B =11572.398947 C =11975.262786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.090 4.090 4 H 0.077 0.923 5 C -0.146 4.146 6 C 0.084 3.916 7 O -0.254 6.254 8 N -0.366 5.366 9 C 0.178 3.822 10 C -0.166 4.166 11 C -0.029 4.029 12 C -0.201 4.201 13 C 0.176 3.824 14 O -0.205 6.205 15 C -0.392 4.392 16 H 0.111 0.889 17 C 0.066 3.934 18 N -0.870 5.870 19 Si 0.906 3.094 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.258 1.258 23 C -0.229 4.229 24 C -0.033 4.033 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.111 0.889 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.282 0.718 39 H 0.139 0.861 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.842 -9.748 3.017 22.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.110 4.110 4 H 0.095 0.905 5 C -0.203 4.203 6 C 0.007 3.993 7 O -0.266 6.266 8 N -0.114 5.114 9 C -0.029 4.029 10 C -0.169 4.169 11 C -0.049 4.049 12 C -0.221 4.221 13 C 0.121 3.879 14 O -0.108 6.108 15 C -0.467 4.467 16 H 0.128 0.872 17 C -0.139 4.139 18 N -0.506 5.506 19 Si 0.731 3.269 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.182 1.182 23 C -0.248 4.248 24 C -0.054 4.054 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.129 0.871 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.092 0.908 39 H 0.156 0.844 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.515 -10.572 3.041 22.402 hybrid contribution 0.267 0.329 -0.083 0.431 sum -19.248 -10.243 2.958 22.004 Atomic orbital electron populations 1.21797 0.95413 1.01648 1.02079 1.21493 0.96208 0.95382 1.02387 1.21195 0.93384 0.96837 0.99565 0.90457 1.21840 1.00953 1.01105 0.96430 1.22359 0.93016 0.83298 1.00650 1.89739 1.15633 1.27948 1.93282 1.76754 0.91944 1.24430 1.18313 1.24246 0.94300 0.93912 0.90427 1.17894 0.88473 0.94084 1.16477 1.20839 0.92120 0.97615 0.94365 1.20179 0.94403 0.95326 1.12173 1.19333 0.83437 0.93454 0.91663 1.83538 1.16738 1.33413 1.77104 1.20848 0.94080 0.82170 1.49583 0.87216 1.24519 0.96480 0.97798 0.95130 1.69628 1.15177 1.21193 1.44583 0.86168 0.79082 0.82074 0.79562 1.19686 1.20597 1.18207 1.21179 0.93348 0.99510 1.10772 1.20855 0.94246 0.95437 0.94854 0.92669 0.92667 0.92357 0.91704 0.91657 0.92766 0.92130 0.92502 0.92979 0.92926 0.87145 0.85848 0.86085 0.90752 0.84352 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.67 37.16 0.36 -0.59 16 2 C -0.12 -0.85 5.40 -26.73 -0.14 -1.00 16 3 C -0.09 -0.82 2.63 -90.62 -0.24 -1.06 16 4 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 5 C -0.15 -1.29 8.84 37.16 0.33 -0.96 16 6 C 0.08 0.98 5.78 37.16 0.21 1.20 16 7 O -0.25 -3.78 10.90 -11.47 -0.12 -3.91 16 8 N -0.37 -5.88 10.46 32.11 0.34 -5.55 16 9 C 0.18 2.73 10.90 -14.80 -0.16 2.57 16 10 C -0.17 -2.79 5.87 -105.00 -0.62 -3.41 16 11 C -0.03 -0.51 9.57 -39.21 -0.38 -0.88 16 12 C -0.20 -3.86 9.97 -39.46 -0.39 -4.25 16 13 C 0.18 3.86 6.65 -38.96 -0.26 3.60 16 14 O -0.21 -5.16 8.58 0.46 0.00 -5.15 16 15 C -0.39 -10.50 9.94 30.89 0.31 -10.19 16 16 H 0.11 2.98 5.42 -52.49 -0.28 2.69 16 17 C 0.07 1.76 5.49 -17.52 -0.10 1.67 16 18 N -0.87 -24.07 13.96 55.48 0.77 -23.30 16 19 Si 0.91 20.78 28.62 -169.99 -4.86 15.92 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 23 C -0.23 -4.60 9.15 -39.46 -0.36 -4.96 16 24 C -0.03 -0.57 9.78 -39.21 -0.38 -0.95 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.35 6.56 -51.93 -0.34 0.01 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.62 7.82 -51.93 -0.41 0.21 16 32 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 36 H 0.12 1.97 7.55 -52.49 -0.40 1.57 16 37 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 38 H 0.28 7.20 8.31 -40.82 -0.34 6.87 16 39 H 0.14 2.88 5.62 -52.49 -0.29 2.59 16 40 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 340.63 15.07 5.13 5.13 Total: -1.00 -28.19 340.63 -6.41 -34.60 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.85 Total: 1.46 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -1.82 Total: -19.21 kcal Atomic # 7 Polarization: -29.95 SS G_CDS: 1.11 Total: -28.84 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.12 Total: -9.06 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.86 Total: 15.92 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.19 -6.41 -34.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793164676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.843 kcal (2) G-P(sol) polarization free energy of solvation -28.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds