Wall clock time and date at job start Mon Mar 30 2020 02:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47166 * 2 1 4 4 H 1.08996 * 109.47186 * 305.00335 * 3 2 1 5 5 C 1.52996 * 109.47083 * 65.00289 * 3 2 1 6 6 C 1.53005 * 109.46953 * 185.00252 * 3 2 1 7 7 O 1.42905 * 109.46887 * 175.00440 * 6 3 2 8 8 N 1.41599 * 113.99732 * 180.02562 * 7 6 3 9 9 C 1.29417 * 119.99858 * 179.97438 * 8 7 6 10 10 C 1.47494 * 119.99997 * 179.72300 * 9 8 7 11 11 C 1.39746 * 120.07793 * 359.97438 * 10 9 8 12 12 C 1.37723 * 119.91551 * 179.74376 * 11 10 9 13 13 C 1.39080 * 120.08139 * 0.50706 * 12 11 10 14 14 O 1.35642 * 119.92306 * 179.74026 * 13 12 11 15 15 C 1.34804 * 117.00014 * 174.47118 * 14 13 12 16 16 H 1.08000 * 120.00367 * 5.06255 * 15 14 13 17 17 C 1.38673 * 119.99983 * 185.06094 * 15 14 13 18 18 N 1.31534 * 120.00217 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99637 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46988 * 90.00282 * 19 17 15 21 21 H 1.48510 * 109.47015 * 210.00226 * 19 17 15 22 22 H 1.48501 * 109.47522 * 330.00341 * 19 17 15 23 23 C 1.39077 * 120.16071 * 359.76863 * 13 12 11 24 24 C 1.37725 * 120.07827 * 359.97438 * 23 13 12 25 25 H 1.08998 * 109.47017 * 59.99938 * 1 2 3 26 26 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46977 * 299.99488 * 1 2 3 28 28 H 1.09003 * 109.47196 * 240.00116 * 2 1 3 29 29 H 1.09004 * 109.47232 * 120.00451 * 2 1 3 30 30 H 1.09004 * 109.47410 * 60.00010 * 5 3 2 31 31 H 1.08999 * 109.47338 * 179.97438 * 5 3 2 32 32 H 1.09003 * 109.47282 * 299.99968 * 5 3 2 33 33 H 1.08994 * 109.47357 * 54.99792 * 6 3 2 34 34 H 1.09003 * 109.47060 * 294.99664 * 6 3 2 35 35 H 1.08009 * 119.99575 * 359.97438 * 9 8 7 36 36 H 1.07998 * 120.04145 * 359.97438 * 11 10 9 37 37 H 1.07995 * 119.95931 * 180.23418 * 12 11 10 38 38 H 0.97003 * 120.00292 * 179.97438 * 18 17 15 39 39 H 1.07995 * 119.96170 * 179.97438 * 23 13 12 40 40 H 1.08003 * 120.04069 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4442 -0.1258 7 8 4.0316 2.7899 -0.2428 8 7 5.4376 2.9031 -0.3659 9 6 5.9853 4.0701 -0.4797 10 6 7.4504 4.1884 -0.6018 11 6 8.2488 3.0415 -0.5942 12 6 9.6161 3.1555 -0.7137 13 6 10.2033 4.4108 -0.8312 14 8 11.5506 4.5197 -0.9435 15 6 12.0484 5.7520 -1.1689 16 1 11.3902 6.6083 -1.1708 17 6 13.4056 5.9203 -1.3985 18 7 13.8914 7.1228 -1.6180 19 14 14.5441 4.4393 -1.3945 20 1 14.6341 3.8805 -2.7674 21 1 15.8954 4.8550 -0.9396 22 1 14.0081 3.4052 -0.4733 23 6 9.4124 5.5548 -0.8334 24 6 8.0440 5.4481 -0.7196 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.0700 1.5874 2.1492 31 1 1.9990 3.1540 1.3076 32 1 0.5490 2.1252 1.3970 33 1 3.8571 0.8800 -1.0113 34 1 4.0030 0.9835 0.7596 35 1 5.3698 4.9576 -0.4813 36 1 7.7938 2.0667 -0.4985 37 1 10.2334 2.2694 -0.7117 38 1 14.8408 7.2405 -1.7782 39 1 9.8717 6.5279 -0.9245 40 1 7.4304 6.3369 -0.7210 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793164676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:32 Heat of formation + Delta-G solvation = -23.007804 kcal Electronic energy + Delta-G solvation = -19843.182669 eV Core-core repulsion = 16624.566634 eV Total energy + Delta-G solvation = -3218.616035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.94258 -39.12724 -38.54690 -36.96122 -34.74027 -34.26673 -31.97940 -31.05250 -30.01469 -27.65710 -27.26800 -24.41004 -23.86430 -23.50069 -21.42527 -20.89303 -19.84066 -19.13752 -18.18189 -17.01854 -16.71106 -16.50480 -16.04905 -15.78164 -15.62582 -15.50964 -15.29115 -14.91382 -14.39909 -14.17593 -14.13688 -14.00066 -13.66219 -13.20737 -12.94294 -12.87083 -12.81186 -12.61668 -12.51781 -12.14648 -11.98390 -11.77312 -11.60836 -11.49776 -11.32150 -11.00900 -10.82960 -10.60893 -9.89771 -8.92024 -8.51689 -6.23524 -0.01661 0.55866 1.33587 1.34353 1.51619 1.55975 1.71148 2.27557 2.79509 3.00402 3.15043 3.75308 3.85214 3.89738 3.93875 4.09372 4.14750 4.37279 4.38767 4.46435 4.54332 4.61625 4.65311 4.70278 4.76268 4.83775 4.86937 5.04174 5.06663 5.13065 5.19156 5.19452 5.27371 5.41494 5.44685 5.50348 5.51897 5.65139 5.76802 5.83251 6.13247 6.61362 6.81963 7.53100 8.58790 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.053732 B = 0.002419 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.981462 B =11572.398947 C =11975.262786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.084 4.084 4 H 0.075 0.925 5 C -0.144 4.144 6 C 0.078 3.922 7 O -0.258 6.258 8 N -0.375 5.375 9 C 0.177 3.823 10 C -0.145 4.145 11 C -0.029 4.029 12 C -0.199 4.199 13 C 0.143 3.857 14 O -0.235 6.235 15 C -0.401 4.401 16 H 0.090 0.910 17 C 0.014 3.986 18 N -0.915 5.915 19 Si 0.967 3.033 20 H -0.266 1.266 21 H -0.268 1.268 22 H -0.262 1.262 23 C -0.240 4.240 24 C -0.025 4.025 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.133 0.867 38 H 0.286 0.714 39 H 0.123 0.877 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.699 -11.558 3.415 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.104 4.104 4 H 0.093 0.907 5 C -0.201 4.201 6 C 0.001 3.999 7 O -0.272 6.272 8 N -0.122 5.122 9 C -0.031 4.031 10 C -0.147 4.147 11 C -0.049 4.049 12 C -0.218 4.218 13 C 0.092 3.908 14 O -0.141 6.141 15 C -0.477 4.477 16 H 0.107 0.893 17 C -0.186 4.186 18 N -0.555 5.555 19 Si 0.789 3.211 20 H -0.191 1.191 21 H -0.193 1.193 22 H -0.186 1.186 23 C -0.259 4.259 24 C -0.045 4.045 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.151 0.849 38 H 0.096 0.904 39 H 0.140 0.860 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -22.415 -12.405 3.445 25.849 hybrid contribution 0.638 0.746 -0.148 0.992 sum -21.778 -11.659 3.297 24.921 Atomic orbital electron populations 1.21794 0.94443 1.02334 1.02262 1.21486 0.96986 0.93999 1.02712 1.21201 0.91403 0.98159 0.99642 0.90687 1.21828 1.02015 1.00038 0.96265 1.22630 0.94648 0.81960 1.00669 1.89752 1.14400 1.29896 1.93158 1.76641 0.93292 1.25162 1.17150 1.24232 0.93403 0.95015 0.90477 1.18168 0.89650 0.93725 1.13145 1.21097 0.91354 0.98876 0.93561 1.20404 0.95365 0.94732 1.11261 1.19847 0.82917 0.95144 0.92920 1.83497 1.18333 1.32111 1.80170 1.20782 0.94283 0.82612 1.50065 0.89251 1.25268 0.97838 1.00320 0.95174 1.69705 1.15701 1.22830 1.47271 0.85265 0.77543 0.78719 0.79530 1.19103 1.19292 1.18638 1.21242 0.94844 0.98471 1.11326 1.21158 0.93034 0.97146 0.93128 0.92628 0.91786 0.92046 0.91490 0.91287 0.92635 0.93676 0.90916 0.92904 0.92922 0.84280 0.83956 0.84936 0.90438 0.85952 0.82594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.67 71.98 0.70 -0.78 16 2 C -0.11 -1.37 5.40 30.59 0.17 -1.20 16 3 C -0.08 -1.33 2.63 -10.79 -0.03 -1.36 16 4 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 5 C -0.14 -2.20 8.84 71.98 0.64 -1.57 16 6 C 0.08 1.63 5.78 71.98 0.42 2.05 16 7 O -0.26 -6.97 10.90 -38.78 -0.42 -7.39 16 8 N -0.38 -10.85 10.46 -52.32 -0.55 -11.40 16 9 C 0.18 4.73 10.90 87.49 0.95 5.69 16 10 C -0.14 -4.40 5.87 -20.11 -0.12 -4.52 16 11 C -0.03 -0.94 9.57 22.51 0.22 -0.72 16 12 C -0.20 -7.41 9.97 22.35 0.22 -7.19 16 13 C 0.14 6.35 6.65 22.67 0.15 6.51 16 14 O -0.24 -12.22 8.58 -21.28 -0.18 -12.40 16 15 C -0.40 -22.58 9.94 67.92 0.68 -21.90 16 16 H 0.09 5.19 5.42 -2.91 -0.02 5.17 16 17 C 0.01 0.76 5.49 84.84 0.47 1.23 16 18 N -0.92 -52.82 13.96 21.62 0.30 -52.52 16 19 Si 0.97 43.94 28.62 68.60 1.96 45.90 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 22 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 23 C -0.24 -9.69 9.15 22.35 0.20 -9.49 16 24 C -0.02 -0.78 9.78 22.51 0.22 -0.55 16 25 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.06 0.56 6.56 -2.39 -0.02 0.55 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.04 0.83 7.82 -2.39 -0.02 0.81 16 32 H 0.07 0.87 6.57 -2.39 -0.02 0.86 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 36 H 0.14 4.09 7.55 -2.91 -0.02 4.07 16 37 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 38 H 0.29 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.12 5.35 5.62 -2.91 -0.02 5.33 16 40 H 0.16 3.70 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -62.40 340.63 7.01 -55.40 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 1.02 Total: 16.22 kcal Atomic # 6 Polarization: -38.69 SS G_CDS: 4.88 Total: -33.81 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -0.25 Total: -63.92 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.61 Total: -19.79 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.96 Total: 45.90 kcal Total: -62.40 7.01 -55.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793164676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.387 kcal (2) G-P(sol) polarization free energy of solvation -62.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds