Wall clock time and date at job start Mon Mar 30 2020 02:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47019 * 2 1 4 4 H 1.08995 * 109.46902 * 55.00287 * 3 2 1 5 5 C 1.52995 * 109.47297 * 295.00360 * 3 2 1 6 6 C 1.52996 * 109.46996 * 175.00364 * 3 2 1 7 7 O 1.42900 * 109.46945 * 185.00292 * 6 3 2 8 8 N 1.41600 * 114.00035 * 179.97438 * 7 6 3 9 9 C 1.29416 * 119.99993 * 179.97438 * 8 7 6 10 10 C 1.47500 * 119.99994 * 180.02562 * 9 8 7 11 11 C 1.39748 * 120.07877 * 359.73253 * 10 9 8 12 12 C 1.37723 * 119.91712 * 179.76605 * 11 10 9 13 13 C 1.39078 * 120.08062 * 0.50651 * 12 11 10 14 14 O 1.35641 * 119.92031 * 179.72193 * 13 12 11 15 15 C 1.34804 * 116.99818 * 174.47030 * 14 13 12 16 16 H 1.07994 * 120.00432 * 5.05287 * 15 14 13 17 17 C 1.38668 * 119.99724 * 185.06072 * 15 14 13 18 18 N 1.31544 * 120.00376 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00057 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47188 * 59.99505 * 19 17 15 21 21 H 1.48498 * 109.47161 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46820 * 299.99491 * 19 17 15 23 23 C 1.39073 * 120.15808 * 359.74071 * 13 12 11 24 24 C 1.37715 * 120.08354 * 0.02562 * 23 13 12 25 25 H 1.09002 * 109.46884 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46912 * 299.99274 * 1 2 3 27 27 H 1.08999 * 109.47342 * 59.99704 * 1 2 3 28 28 H 1.09001 * 109.46912 * 240.00726 * 2 1 3 29 29 H 1.08999 * 109.47342 * 120.00296 * 2 1 3 30 30 H 1.09005 * 109.47132 * 59.99933 * 5 3 2 31 31 H 1.09002 * 109.47158 * 179.97438 * 5 3 2 32 32 H 1.09007 * 109.47427 * 300.00098 * 5 3 2 33 33 H 1.09006 * 109.46943 * 304.99636 * 6 3 2 34 34 H 1.09000 * 109.47336 * 65.00242 * 6 3 2 35 35 H 1.08004 * 120.00062 * 0.02562 * 9 8 7 36 36 H 1.08001 * 120.04183 * 359.97438 * 11 10 9 37 37 H 1.08006 * 119.95740 * 180.25099 * 12 11 10 38 38 H 0.97001 * 120.00574 * 180.02562 * 18 17 15 39 39 H 1.08008 * 119.95693 * 179.97438 * 23 13 12 40 40 H 1.08004 * 120.04485 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1256 7 8 4.0314 2.7899 0.2428 8 7 5.4375 2.9033 0.3658 9 6 5.9852 4.0704 0.4788 10 6 7.4500 4.1884 0.6063 11 6 8.2474 3.0408 0.6109 12 6 9.6151 3.1552 0.7253 13 6 10.2019 4.4102 0.8467 14 8 11.5488 4.5187 0.9649 15 6 12.0649 5.7641 0.9635 16 1 11.4077 6.6210 0.9534 17 6 13.4397 5.9448 0.9749 18 7 14.2403 4.9012 0.9876 19 14 14.1549 7.6706 0.9738 20 1 13.6869 8.4012 2.1788 21 1 15.6377 7.5918 0.9879 22 1 13.7086 8.3905 -0.2461 23 6 9.4110 5.5542 0.8477 24 6 8.0432 5.4478 0.7288 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.5488 2.1253 -1.3968 31 1 1.9981 3.1545 -1.3070 32 1 2.0698 1.5876 -2.1492 33 1 3.8571 0.8801 1.0113 34 1 4.0029 0.9837 -0.7598 35 1 5.3698 4.9579 0.4797 36 1 7.7920 2.0656 0.5215 37 1 10.2323 2.2689 0.7249 38 1 15.2020 5.0276 0.9960 39 1 9.8702 6.5272 0.9426 40 1 7.4295 6.3366 0.7301 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793164678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:36 Heat of formation + Delta-G solvation = -10.764494 kcal Electronic energy + Delta-G solvation = -19811.209721 eV Core-core repulsion = 16593.124596 eV Total energy + Delta-G solvation = -3218.085125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.13736 -38.02726 -36.94442 -35.88391 -33.31518 -32.33612 -30.36068 -30.15987 -28.50584 -26.64175 -25.59226 -23.48095 -22.54006 -21.92743 -20.32431 -19.80668 -18.15026 -17.25276 -16.75801 -15.93071 -15.47587 -14.84930 -14.76478 -14.62732 -14.32187 -14.08041 -13.78162 -13.57660 -13.31373 -12.85196 -12.66633 -12.40924 -12.29188 -12.19342 -11.83187 -11.79206 -11.27465 -11.23800 -11.02004 -10.95353 -10.90693 -10.77205 -10.71141 -10.53418 -9.61682 -9.49712 -9.43066 -8.86468 -8.31970 -7.19806 -6.59670 -4.16370 1.49494 2.17827 2.90989 2.94642 3.06559 3.10555 3.13015 3.85980 4.54031 4.58111 4.64608 4.65785 4.97570 5.02477 5.09682 5.15478 5.23289 5.25211 5.38021 5.49398 5.57421 5.57886 5.67834 5.71115 5.72654 5.75736 5.80354 5.87819 6.07830 6.12467 6.15576 6.23125 6.54297 6.57738 6.78061 6.96946 7.11691 7.20917 7.30429 7.67074 7.85155 7.90903 8.84958 9.52274 10.57073 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.061414 B = 0.002339 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.811594 B =11967.984215 C =12301.494890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.090 4.090 4 H 0.077 0.923 5 C -0.146 4.146 6 C 0.084 3.916 7 O -0.255 6.255 8 N -0.368 5.368 9 C 0.180 3.820 10 C -0.176 4.176 11 C -0.027 4.027 12 C -0.202 4.202 13 C 0.169 3.831 14 O -0.165 6.165 15 C -0.394 4.394 16 H 0.096 0.904 17 C 0.041 3.959 18 N -0.854 5.854 19 Si 0.944 3.056 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.268 1.268 23 C -0.241 4.241 24 C -0.032 4.032 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.274 0.726 39 H 0.133 0.867 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.740 -3.856 -1.929 20.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.110 4.110 4 H 0.095 0.905 5 C -0.203 4.203 6 C 0.007 3.993 7 O -0.267 6.267 8 N -0.117 5.117 9 C -0.027 4.027 10 C -0.179 4.179 11 C -0.047 4.047 12 C -0.221 4.221 13 C 0.113 3.887 14 O -0.066 6.066 15 C -0.470 4.470 16 H 0.114 0.886 17 C -0.165 4.165 18 N -0.487 5.487 19 Si 0.768 3.232 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.193 1.193 23 C -0.261 4.261 24 C -0.052 4.052 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.127 0.873 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.084 0.916 39 H 0.150 0.850 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -19.354 -4.887 -1.955 20.057 hybrid contribution 0.049 1.526 0.033 1.527 sum -19.305 -3.361 -1.922 19.689 Atomic orbital electron populations 1.21798 0.95438 1.01631 1.02057 1.21494 0.96180 0.95406 1.02400 1.21193 0.93446 0.96810 0.99528 0.90491 1.21839 1.00911 1.01100 0.96459 1.22345 0.92953 0.83358 1.00640 1.89726 1.15798 1.27888 1.93331 1.76781 0.91766 1.24404 1.18738 1.24244 0.94344 0.93789 0.90322 1.17831 0.88400 0.94062 1.17576 1.20834 0.92157 0.97492 0.94247 1.20184 0.94309 0.95635 1.11984 1.19582 0.84823 0.93457 0.90881 1.83939 1.15152 1.31514 1.75974 1.21388 0.91023 0.81617 1.52934 0.88643 1.25373 0.94974 1.00007 0.96120 1.70020 1.04424 1.29915 1.44379 0.85727 0.78194 0.79896 0.79359 1.19317 1.20158 1.19300 1.21053 0.93371 0.99202 1.12451 1.20794 0.94188 0.95324 0.94914 0.92676 0.92687 0.92369 0.91651 0.91697 0.92539 0.92145 0.92758 0.93009 0.92946 0.87345 0.86024 0.86097 0.91638 0.84983 0.86728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.67 37.16 0.36 -0.62 16 2 C -0.12 -0.89 5.40 -26.73 -0.14 -1.03 16 3 C -0.09 -0.85 2.63 -90.62 -0.24 -1.09 16 4 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 5 C -0.15 -1.33 8.84 37.16 0.33 -1.00 16 6 C 0.08 1.03 5.78 37.16 0.21 1.24 16 7 O -0.26 -3.94 10.90 -11.47 -0.12 -4.06 16 8 N -0.37 -6.15 10.46 32.11 0.34 -5.82 16 9 C 0.18 2.86 10.90 -14.80 -0.16 2.70 16 10 C -0.18 -3.08 5.87 -104.99 -0.62 -3.69 16 11 C -0.03 -0.50 9.57 -39.21 -0.38 -0.88 16 12 C -0.20 -4.17 9.97 -39.46 -0.39 -4.57 16 13 C 0.17 3.92 6.65 -38.96 -0.26 3.66 16 14 O -0.16 -4.51 9.75 0.46 0.00 -4.51 16 15 C -0.39 -10.48 9.48 30.89 0.29 -10.19 16 16 H 0.10 2.31 5.19 -52.49 -0.27 2.04 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 18 N -0.85 -24.10 13.67 55.48 0.76 -23.34 16 19 Si 0.94 19.57 29.55 -169.99 -5.02 14.55 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 23 C -0.24 -4.93 9.15 -39.46 -0.36 -5.29 16 24 C -0.03 -0.55 9.78 -39.21 -0.38 -0.93 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 31 H 0.06 0.63 7.82 -51.93 -0.41 0.23 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.11 1.48 8.06 -52.48 -0.42 1.05 16 36 H 0.12 2.08 7.55 -52.49 -0.40 1.68 16 37 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.13 2.64 5.62 -52.48 -0.29 2.35 16 40 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 341.76 15.07 5.15 5.15 Total: -1.00 -29.25 341.76 -6.57 -35.82 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -5.84 Total: 2.91 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -1.83 Total: -20.70 kcal Atomic # 7 Polarization: -30.25 SS G_CDS: 1.09 Total: -29.16 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.12 Total: -8.57 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.25 -6.57 -35.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793164678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.058 kcal (2) G-P(sol) polarization free energy of solvation -29.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds