Wall clock time and date at job start Mon Mar 30 2020 02:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47019 * 2 1 4 4 H 1.08995 * 109.46902 * 55.00287 * 3 2 1 5 5 C 1.52995 * 109.47297 * 295.00360 * 3 2 1 6 6 C 1.52996 * 109.46996 * 175.00364 * 3 2 1 7 7 O 1.42900 * 109.46945 * 185.00292 * 6 3 2 8 8 N 1.41600 * 114.00035 * 179.97438 * 7 6 3 9 9 C 1.29416 * 119.99993 * 179.97438 * 8 7 6 10 10 C 1.47500 * 119.99994 * 180.02562 * 9 8 7 11 11 C 1.39748 * 120.07877 * 359.73253 * 10 9 8 12 12 C 1.37723 * 119.91712 * 179.76605 * 11 10 9 13 13 C 1.39078 * 120.08062 * 0.50651 * 12 11 10 14 14 O 1.35641 * 119.92031 * 179.72193 * 13 12 11 15 15 C 1.34804 * 116.99818 * 174.47030 * 14 13 12 16 16 H 1.07994 * 120.00432 * 5.05287 * 15 14 13 17 17 C 1.38668 * 119.99724 * 185.06072 * 15 14 13 18 18 N 1.31544 * 120.00376 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00057 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47188 * 59.99505 * 19 17 15 21 21 H 1.48498 * 109.47161 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46820 * 299.99491 * 19 17 15 23 23 C 1.39073 * 120.15808 * 359.74071 * 13 12 11 24 24 C 1.37715 * 120.08354 * 0.02562 * 23 13 12 25 25 H 1.09002 * 109.46884 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46912 * 299.99274 * 1 2 3 27 27 H 1.08999 * 109.47342 * 59.99704 * 1 2 3 28 28 H 1.09001 * 109.46912 * 240.00726 * 2 1 3 29 29 H 1.08999 * 109.47342 * 120.00296 * 2 1 3 30 30 H 1.09005 * 109.47132 * 59.99933 * 5 3 2 31 31 H 1.09002 * 109.47158 * 179.97438 * 5 3 2 32 32 H 1.09007 * 109.47427 * 300.00098 * 5 3 2 33 33 H 1.09006 * 109.46943 * 304.99636 * 6 3 2 34 34 H 1.09000 * 109.47336 * 65.00242 * 6 3 2 35 35 H 1.08004 * 120.00062 * 0.02562 * 9 8 7 36 36 H 1.08001 * 120.04183 * 359.97438 * 11 10 9 37 37 H 1.08006 * 119.95740 * 180.25099 * 12 11 10 38 38 H 0.97001 * 120.00574 * 180.02562 * 18 17 15 39 39 H 1.08008 * 119.95693 * 179.97438 * 23 13 12 40 40 H 1.08004 * 120.04485 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1256 7 8 4.0314 2.7899 0.2428 8 7 5.4375 2.9033 0.3658 9 6 5.9852 4.0704 0.4788 10 6 7.4500 4.1884 0.6063 11 6 8.2474 3.0408 0.6109 12 6 9.6151 3.1552 0.7253 13 6 10.2019 4.4102 0.8467 14 8 11.5488 4.5187 0.9649 15 6 12.0649 5.7641 0.9635 16 1 11.4077 6.6210 0.9534 17 6 13.4397 5.9448 0.9749 18 7 14.2403 4.9012 0.9876 19 14 14.1549 7.6706 0.9738 20 1 13.6869 8.4012 2.1788 21 1 15.6377 7.5918 0.9879 22 1 13.7086 8.3905 -0.2461 23 6 9.4110 5.5542 0.8477 24 6 8.0432 5.4478 0.7288 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.5488 2.1253 -1.3968 31 1 1.9981 3.1545 -1.3070 32 1 2.0698 1.5876 -2.1492 33 1 3.8571 0.8801 1.0113 34 1 4.0029 0.9837 -0.7598 35 1 5.3698 4.9579 0.4797 36 1 7.7920 2.0656 0.5215 37 1 10.2323 2.2689 0.7249 38 1 15.2020 5.0276 0.9960 39 1 9.8702 6.5272 0.9426 40 1 7.4295 6.3366 0.7301 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793164678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:35 Heat of formation + Delta-G solvation = -26.310199 kcal Electronic energy + Delta-G solvation = -19811.883833 eV Core-core repulsion = 16593.124596 eV Total energy + Delta-G solvation = -3218.759237 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.82120 -39.09841 -38.45970 -36.94525 -34.71205 -34.08713 -31.93588 -31.00166 -29.89033 -27.63139 -27.34650 -24.47472 -23.89114 -23.41532 -21.46361 -20.89925 -19.88095 -18.89512 -18.13197 -16.96878 -16.68050 -16.31703 -16.19568 -15.71058 -15.64099 -15.58302 -15.14250 -14.90225 -14.48061 -14.16059 -14.03191 -13.62780 -13.55046 -13.17400 -12.93283 -12.79540 -12.74222 -12.58644 -12.44025 -12.15248 -12.11710 -11.77122 -11.60955 -11.49404 -11.22993 -10.93917 -10.80350 -10.53861 -9.86815 -8.84640 -8.49111 -6.16389 0.03621 0.59733 1.38433 1.43305 1.54520 1.61740 1.73497 2.18020 2.86378 3.18336 3.43946 3.77220 3.85547 3.90116 3.93938 4.13243 4.16793 4.37732 4.39351 4.47564 4.56977 4.62580 4.68128 4.70700 4.76273 4.83722 4.96864 5.01640 5.05895 5.11800 5.15665 5.19295 5.24523 5.36236 5.44110 5.51094 5.53979 5.63997 5.69975 5.99676 6.08578 6.64676 6.94984 7.71967 8.72929 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.061414 B = 0.002339 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.811594 B =11967.984215 C =12301.494890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.084 4.084 4 H 0.075 0.925 5 C -0.144 4.144 6 C 0.078 3.922 7 O -0.258 6.258 8 N -0.381 5.381 9 C 0.179 3.821 10 C -0.155 4.155 11 C -0.027 4.027 12 C -0.212 4.212 13 C 0.136 3.864 14 O -0.221 6.221 15 C -0.416 4.416 16 H 0.111 0.889 17 C -0.021 4.021 18 N -0.916 5.916 19 Si 1.020 2.980 20 H -0.255 1.255 21 H -0.275 1.275 22 H -0.255 1.255 23 C -0.245 4.245 24 C -0.020 4.020 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.142 0.858 36 H 0.136 0.864 37 H 0.116 0.884 38 H 0.274 0.726 39 H 0.134 0.866 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.278 -2.738 -2.227 23.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.104 4.104 4 H 0.094 0.906 5 C -0.201 4.201 6 C 0.001 3.999 7 O -0.272 6.272 8 N -0.128 5.128 9 C -0.028 4.028 10 C -0.157 4.157 11 C -0.047 4.047 12 C -0.231 4.231 13 C 0.083 3.917 14 O -0.126 6.126 15 C -0.492 4.492 16 H 0.128 0.872 17 C -0.220 4.220 18 N -0.553 5.553 19 Si 0.839 3.161 20 H -0.179 1.179 21 H -0.200 1.200 22 H -0.180 1.180 23 C -0.265 4.265 24 C -0.040 4.040 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.160 0.840 36 H 0.154 0.846 37 H 0.135 0.865 38 H 0.083 0.917 39 H 0.152 0.848 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -22.956 -3.783 -2.256 23.375 hybrid contribution 0.645 0.964 0.086 1.163 sum -22.311 -2.820 -2.170 22.593 Atomic orbital electron populations 1.21792 0.94353 1.02342 1.02294 1.21490 0.97055 0.94017 1.02667 1.21198 0.91300 0.98158 0.99696 0.90609 1.21826 1.02038 1.00037 0.96211 1.22622 0.94716 0.82024 1.00548 1.89735 1.14440 1.29797 1.93199 1.76674 0.93237 1.25335 1.17581 1.24239 0.93348 0.94984 0.90263 1.18147 0.89621 0.93754 1.14193 1.21032 0.91179 0.98897 0.93596 1.20340 0.95431 0.95025 1.12320 1.20101 0.84247 0.95293 0.92066 1.83921 1.17161 1.32090 1.79422 1.21909 0.91820 0.82137 1.53292 0.87196 1.26658 0.95132 1.04633 0.95541 1.70173 1.04631 1.32648 1.47890 0.84619 0.77143 0.74217 0.80105 1.17927 1.19954 1.17960 1.21223 0.94658 0.98363 1.12221 1.21187 0.93102 0.96987 0.92681 0.91792 0.92580 0.92005 0.91354 0.91545 0.90842 0.93632 0.92702 0.93044 0.93087 0.84044 0.84580 0.86545 0.91690 0.84839 0.82043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.67 71.98 0.70 -0.85 16 2 C -0.11 -1.46 5.40 30.60 0.17 -1.30 16 3 C -0.08 -1.39 2.63 -10.79 -0.03 -1.42 16 4 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 5 C -0.14 -2.28 8.84 71.98 0.64 -1.65 16 6 C 0.08 1.73 5.78 71.98 0.42 2.15 16 7 O -0.26 -7.24 10.90 -38.78 -0.42 -7.66 16 8 N -0.38 -11.59 10.46 -52.32 -0.55 -12.14 16 9 C 0.18 4.99 10.90 87.49 0.95 5.95 16 10 C -0.15 -4.95 5.87 -20.11 -0.12 -5.07 16 11 C -0.03 -0.97 9.57 22.51 0.22 -0.75 16 12 C -0.21 -8.96 9.97 22.35 0.22 -8.73 16 13 C 0.14 6.48 6.65 22.67 0.15 6.63 16 14 O -0.22 -12.82 9.75 -21.28 -0.21 -13.03 16 15 C -0.42 -23.08 9.48 67.92 0.64 -22.44 16 16 H 0.11 5.44 5.19 -2.91 -0.02 5.43 16 17 C -0.02 -1.16 5.49 84.84 0.47 -0.69 16 18 N -0.92 -54.73 13.67 21.62 0.30 -54.43 16 19 Si 1.02 40.95 29.55 68.60 2.03 42.97 16 20 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 21 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 22 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 23 C -0.25 -9.83 9.15 22.35 0.20 -9.62 16 24 C -0.02 -0.62 9.78 22.51 0.22 -0.39 16 25 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.59 6.56 -2.39 -0.02 0.58 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.91 6.57 -2.38 -0.02 0.90 16 31 H 0.04 0.86 7.82 -2.39 -0.02 0.84 16 32 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 36 H 0.14 4.44 7.55 -2.91 -0.02 4.41 16 37 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 38 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 39 H 0.13 5.26 5.62 -2.91 -0.02 5.24 16 40 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -66.98 341.76 7.01 -59.97 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 1.02 Total: 22.51 kcal Atomic # 6 Polarization: -43.03 SS G_CDS: 4.84 Total: -38.19 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: -0.25 Total: -66.57 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.63 Total: -20.69 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.97 kcal Total: -66.98 7.01 -59.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793164678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.656 kcal (2) G-P(sol) polarization free energy of solvation -66.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds