Wall clock time and date at job start Mon Mar 30 2020 01:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.53004 * 109.46628 * 119.99866 * 2 1 3 5 5 H 1.09001 * 109.47204 * 299.99401 * 4 2 1 6 6 C 1.50695 * 109.47319 * 60.00213 * 4 2 1 7 7 O 1.20825 * 120.00224 * 119.99559 * 6 4 2 8 8 O 1.34232 * 119.99727 * 299.99634 * 6 4 2 9 9 C 1.45206 * 116.99878 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.47129 * 180.02562 * 9 8 6 11 11 C 1.50696 * 109.46919 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00202 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99746 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99981 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99781 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47295 * 60.00417 * 15 13 11 17 17 H 1.48503 * 109.46845 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47035 * 299.99817 * 15 13 11 19 19 C 1.50703 * 109.46661 * 179.97438 * 4 2 1 20 20 C 1.38672 * 120.41511 * 119.99983 * 19 4 2 21 21 C 1.38635 * 118.41713 * 180.02562 * 20 19 4 22 22 C 1.38221 * 119.16327 * 359.97438 * 21 20 19 23 23 N 1.31856 * 120.76216 * 0.02562 * 22 21 20 24 24 C 1.31881 * 121.72648 * 359.70149 * 23 22 21 25 25 H 1.09001 * 109.46838 * 300.00510 * 1 2 3 26 26 H 1.08995 * 109.46886 * 59.99965 * 1 2 3 27 27 H 1.08993 * 109.46888 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46838 * 239.99490 * 2 1 3 29 29 H 1.09005 * 109.46625 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47116 * 299.99528 * 3 2 1 31 31 H 1.08997 * 109.47186 * 60.00021 * 3 2 1 32 32 H 1.09004 * 109.47122 * 299.99817 * 9 8 6 33 33 H 1.09000 * 109.47070 * 59.99842 * 9 8 6 34 34 H 1.09004 * 109.46930 * 299.99887 * 10 9 8 35 35 H 1.09004 * 109.47059 * 59.99488 * 10 9 8 36 36 H 0.96991 * 120.00238 * 179.97438 * 14 13 11 37 37 H 1.07998 * 120.79542 * 359.97438 * 20 19 4 38 38 H 1.08007 * 120.41558 * 180.02562 * 21 20 19 39 39 H 1.08005 * 119.61820 * 179.97438 * 22 21 20 40 40 H 1.08007 * 119.61955 * 180.31722 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2073 2.1393 6 6 1.5377 -2.1420 1.2493 7 8 2.3228 -3.0604 1.2494 8 8 0.2179 -2.3873 1.2493 9 6 -0.1938 -3.7797 1.2499 10 6 -1.7217 -3.8598 1.2491 11 6 -2.1490 -5.3049 1.2491 12 1 -1.4052 -6.0879 1.2500 13 6 -3.4896 -5.6274 1.2490 14 7 -4.3953 -4.6739 1.2484 15 14 -4.0192 -7.4187 1.2497 16 1 -3.4886 -8.0914 2.4626 17 1 -5.5022 -7.4964 1.2489 18 1 -3.4880 -8.0924 0.0376 19 6 3.5470 -0.7218 1.2490 20 6 4.2495 -0.1240 2.2844 21 6 5.6350 -0.1482 2.2420 22 6 6.2656 -0.7635 1.1770 23 7 5.5650 -1.3221 0.2096 24 6 4.2463 -1.3227 0.2197 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.6768 1.9563 0.8900 32 1 0.1960 -4.2743 0.3601 33 1 0.1958 -4.2734 2.1401 34 1 -2.1119 -3.3651 2.1387 35 1 -2.1110 -3.3661 0.3587 36 1 -5.3383 -4.9007 1.2480 37 1 3.7297 0.3500 3.1039 38 1 6.2143 0.3073 3.0317 39 1 7.3446 -0.7863 1.1363 40 1 3.7065 -1.7948 -0.5879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797903084.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:50 Heat of formation + Delta-G solvation = -73.775354 kcal Electronic energy + Delta-G solvation = -21382.292941 eV Core-core repulsion = 18161.475460 eV Total energy + Delta-G solvation = -3220.817481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.95976 -39.65728 -36.67209 -36.07248 -33.35712 -32.65498 -31.53999 -30.36753 -28.02834 -26.98607 -25.01980 -23.79837 -22.87013 -21.56228 -20.74601 -19.88598 -17.61138 -17.26315 -16.61270 -16.13257 -15.99685 -15.85452 -15.31437 -14.55741 -14.39651 -14.04622 -13.61832 -13.31990 -13.21088 -13.20461 -12.70083 -12.49990 -12.35494 -12.14700 -12.07083 -11.43886 -11.17226 -11.02296 -10.88139 -10.80049 -10.71397 -10.57214 -10.21916 -9.91359 -9.62854 -9.61744 -9.54562 -9.32279 -9.07379 -8.45642 -6.12068 -4.16448 0.95533 1.15651 2.49608 3.09001 3.29147 3.33221 3.36938 3.74987 4.19434 4.37289 4.49073 4.53617 4.70313 4.80618 4.86305 4.96568 5.08502 5.24553 5.26302 5.27243 5.43812 5.48967 5.65164 5.67683 5.81382 5.93365 5.93898 6.04145 6.06884 6.07837 6.09039 6.25057 6.55521 6.58175 6.66151 6.96957 7.53166 7.59866 7.84493 7.87303 8.15326 8.23847 8.88838 9.48087 10.99295 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028100 B = 0.003669 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.194584 B = 7629.248559 C = 8271.295122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.083 4.083 3 C -0.143 4.143 4 C -0.035 4.035 5 H 0.115 0.885 6 C 0.459 3.541 7 O -0.510 6.510 8 O -0.346 6.346 9 C 0.071 3.929 10 C 0.027 3.973 11 C -0.528 4.528 12 H 0.058 0.942 13 C 0.062 3.938 14 N -0.890 5.890 15 Si 0.899 3.101 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.118 4.118 20 C -0.066 4.066 21 C -0.176 4.176 22 C 0.095 3.905 23 N -0.485 5.485 24 C 0.134 3.866 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.264 0.736 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.154 0.846 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.792 14.121 0.321 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.101 4.101 3 C -0.200 4.200 4 C -0.055 4.055 5 H 0.133 0.867 6 C 0.301 3.699 7 O -0.398 6.398 8 O -0.262 6.262 9 C -0.002 4.002 10 C -0.011 4.011 11 C -0.566 4.566 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.528 5.528 15 Si 0.726 3.274 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.120 4.120 20 C -0.092 4.092 21 C -0.196 4.196 22 C -0.062 4.062 23 N -0.193 5.193 24 C -0.023 4.023 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.107 0.893 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.171 0.829 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 16.232 13.441 -0.378 21.078 hybrid contribution -0.745 -0.749 0.872 1.370 sum 15.487 12.692 0.494 20.029 Atomic orbital electron populations 1.22144 0.92892 1.05075 1.01845 1.21106 0.97581 0.96133 0.95324 1.21829 1.00804 0.95098 1.02308 1.20075 0.91059 0.91633 1.02766 0.86676 1.23261 0.82038 0.91528 0.73032 1.90661 1.57135 1.46703 1.45349 1.86599 1.23465 1.33927 1.82246 1.23682 0.99772 0.75738 1.00961 1.19154 0.85370 0.97716 0.98819 1.20948 0.92041 0.91279 1.52337 0.92358 1.24971 0.96504 0.97751 0.94828 1.69954 1.01038 1.32151 1.49689 0.86542 0.77422 0.84595 0.78811 1.20073 1.21111 1.20049 1.20324 0.94726 1.00248 0.96658 1.21462 0.94284 0.96499 0.96954 1.22076 0.95031 1.02133 1.00374 1.22782 1.00339 0.93297 0.89771 1.67728 1.08149 1.16562 1.26874 1.22541 0.89656 0.93373 0.96746 0.92282 0.92474 0.89275 0.90588 0.92831 0.92042 0.92290 0.92296 0.92404 0.95400 0.95336 0.92646 0.84758 0.84777 0.82903 0.83158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 8.68 37.16 0.32 -1.66 16 2 C -0.08 -0.91 2.32 -90.61 -0.21 -1.12 16 3 C -0.14 -1.26 8.95 37.16 0.33 -0.93 16 4 C -0.04 -0.43 2.11 -92.92 -0.20 -0.63 16 5 H 0.12 1.21 7.93 -51.93 -0.41 0.79 16 6 C 0.46 7.69 7.06 36.00 0.25 7.94 16 7 O -0.51 -9.94 14.85 -18.75 -0.28 -10.22 16 8 O -0.35 -6.48 7.14 -39.26 -0.28 -6.76 16 9 C 0.07 1.54 5.40 37.16 0.20 1.74 16 10 C 0.03 0.68 5.35 -27.88 -0.15 0.53 16 11 C -0.53 -14.71 9.11 -34.44 -0.31 -15.03 16 12 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 15 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C -0.12 -1.42 3.14 -104.48 -0.33 -1.75 16 20 C -0.07 -0.66 9.81 -39.27 -0.39 -1.05 16 21 C -0.18 -1.61 10.11 -39.44 -0.40 -2.01 16 22 C 0.09 1.00 11.18 -17.55 -0.20 0.80 16 23 N -0.48 -6.53 10.36 -13.25 -0.14 -6.67 16 24 C 0.13 1.81 9.12 -17.55 -0.16 1.65 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 1.35 5.32 -51.93 -0.28 1.08 16 28 H 0.08 0.86 7.43 -51.93 -0.39 0.47 16 29 H 0.05 0.48 7.22 -51.93 -0.37 0.11 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 1.28 8.13 -51.93 -0.42 0.85 16 33 H 0.06 1.27 8.13 -51.93 -0.42 0.84 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.13 1.02 8.00 -52.49 -0.42 0.60 16 38 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 39 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 40 H 0.15 2.05 7.53 -52.48 -0.40 1.66 16 LS Contribution 335.03 15.07 5.05 5.05 Total: -1.00 -31.66 335.03 -7.29 -38.94 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.03 Total: -1.42 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -1.33 Total: -9.86 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.60 Total: -32.01 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.56 Total: -16.98 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.66 -7.29 -38.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797903084.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.830 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds