Wall clock time and date at job start Mon Mar 30 2020 01:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.53004 * 109.46628 * 119.99866 * 2 1 3 5 5 H 1.09001 * 109.47204 * 299.99401 * 4 2 1 6 6 C 1.50695 * 109.47319 * 60.00213 * 4 2 1 7 7 O 1.20825 * 120.00224 * 119.99559 * 6 4 2 8 8 O 1.34232 * 119.99727 * 299.99634 * 6 4 2 9 9 C 1.45206 * 116.99878 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.47129 * 180.02562 * 9 8 6 11 11 C 1.50696 * 109.46919 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00202 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99746 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99981 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99781 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47295 * 60.00417 * 15 13 11 17 17 H 1.48503 * 109.46845 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47035 * 299.99817 * 15 13 11 19 19 C 1.50703 * 109.46661 * 179.97438 * 4 2 1 20 20 C 1.38672 * 120.41511 * 119.99983 * 19 4 2 21 21 C 1.38635 * 118.41713 * 180.02562 * 20 19 4 22 22 C 1.38221 * 119.16327 * 359.97438 * 21 20 19 23 23 N 1.31856 * 120.76216 * 0.02562 * 22 21 20 24 24 C 1.31881 * 121.72648 * 359.70149 * 23 22 21 25 25 H 1.09001 * 109.46838 * 300.00510 * 1 2 3 26 26 H 1.08995 * 109.46886 * 59.99965 * 1 2 3 27 27 H 1.08993 * 109.46888 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46838 * 239.99490 * 2 1 3 29 29 H 1.09005 * 109.46625 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47116 * 299.99528 * 3 2 1 31 31 H 1.08997 * 109.47186 * 60.00021 * 3 2 1 32 32 H 1.09004 * 109.47122 * 299.99817 * 9 8 6 33 33 H 1.09000 * 109.47070 * 59.99842 * 9 8 6 34 34 H 1.09004 * 109.46930 * 299.99887 * 10 9 8 35 35 H 1.09004 * 109.47059 * 59.99488 * 10 9 8 36 36 H 0.96991 * 120.00238 * 179.97438 * 14 13 11 37 37 H 1.07998 * 120.79542 * 359.97438 * 20 19 4 38 38 H 1.08007 * 120.41558 * 180.02562 * 21 20 19 39 39 H 1.08005 * 119.61820 * 179.97438 * 22 21 20 40 40 H 1.08007 * 119.61955 * 180.31722 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2073 2.1393 6 6 1.5377 -2.1420 1.2493 7 8 2.3228 -3.0604 1.2494 8 8 0.2179 -2.3873 1.2493 9 6 -0.1938 -3.7797 1.2499 10 6 -1.7217 -3.8598 1.2491 11 6 -2.1490 -5.3049 1.2491 12 1 -1.4052 -6.0879 1.2500 13 6 -3.4896 -5.6274 1.2490 14 7 -4.3953 -4.6739 1.2484 15 14 -4.0192 -7.4187 1.2497 16 1 -3.4886 -8.0914 2.4626 17 1 -5.5022 -7.4964 1.2489 18 1 -3.4880 -8.0924 0.0376 19 6 3.5470 -0.7218 1.2490 20 6 4.2495 -0.1240 2.2844 21 6 5.6350 -0.1482 2.2420 22 6 6.2656 -0.7635 1.1770 23 7 5.5650 -1.3221 0.2096 24 6 4.2463 -1.3227 0.2197 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.6768 1.9563 0.8900 32 1 0.1960 -4.2743 0.3601 33 1 0.1958 -4.2734 2.1401 34 1 -2.1119 -3.3651 2.1387 35 1 -2.1110 -3.3661 0.3587 36 1 -5.3383 -4.9007 1.2480 37 1 3.7297 0.3500 3.1039 38 1 6.2143 0.3073 3.0317 39 1 7.3446 -0.7863 1.1363 40 1 3.7065 -1.7948 -0.5879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797903084.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:50 Heat of formation + Delta-G solvation = -91.220449 kcal Electronic energy + Delta-G solvation = -21383.049417 eV Core-core repulsion = 18161.475460 eV Total energy + Delta-G solvation = -3221.573957 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.10022 -40.79917 -37.90231 -37.37644 -35.44051 -33.50478 -32.39164 -32.34256 -29.08967 -27.87577 -26.94143 -24.64533 -23.99079 -23.04227 -22.26070 -20.96731 -19.05298 -18.29055 -18.07113 -17.80328 -17.39585 -16.88347 -16.49656 -16.26434 -15.40406 -15.06536 -14.94057 -14.56321 -14.37152 -14.33113 -13.97487 -13.77906 -13.50615 -13.22426 -13.06193 -12.95419 -12.88604 -12.63282 -12.57808 -12.00868 -11.86502 -11.78554 -11.72217 -11.50894 -11.35130 -11.25230 -10.72236 -10.60881 -10.40958 -9.94192 -8.27481 -6.40444 0.10188 0.34895 1.13563 1.40104 1.43328 1.51094 1.75887 2.39376 2.87332 3.06831 3.28388 3.53179 3.65597 3.80570 3.94008 4.05943 4.06618 4.19128 4.21660 4.25620 4.36571 4.46479 4.62527 4.67604 4.70021 4.82122 4.87073 5.03778 5.04874 5.17385 5.21430 5.25904 5.26508 5.40521 5.47711 5.51123 5.63214 5.74114 5.77436 6.06861 6.69930 6.74432 7.02399 7.29149 8.84637 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028100 B = 0.003669 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.194584 B = 7629.248559 C = 8271.295122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.078 4.078 3 C -0.134 4.134 4 C -0.024 4.024 5 H 0.141 0.859 6 C 0.457 3.543 7 O -0.539 6.539 8 O -0.346 6.346 9 C 0.087 3.913 10 C 0.035 3.965 11 C -0.553 4.553 12 H 0.061 0.939 13 C 0.009 3.991 14 N -0.925 5.925 15 Si 0.970 3.030 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.267 1.267 19 C -0.128 4.128 20 C -0.066 4.066 21 C -0.165 4.165 22 C 0.085 3.915 23 N -0.517 5.517 24 C 0.110 3.890 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.008 0.992 35 H 0.008 0.992 36 H 0.268 0.732 37 H 0.165 0.835 38 H 0.173 0.827 39 H 0.181 0.819 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.020 15.189 1.515 22.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.097 4.097 3 C -0.191 4.191 4 C -0.044 4.044 5 H 0.159 0.841 6 C 0.301 3.699 7 O -0.429 6.429 8 O -0.262 6.262 9 C 0.014 3.986 10 C -0.002 4.002 11 C -0.591 4.591 12 H 0.080 0.920 13 C -0.190 4.190 14 N -0.563 5.563 15 Si 0.794 3.206 16 H -0.191 1.191 17 H -0.203 1.203 18 H -0.192 1.192 19 C -0.130 4.130 20 C -0.092 4.092 21 C -0.184 4.184 22 C -0.072 4.072 23 N -0.226 5.226 24 C -0.046 4.046 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.026 0.974 35 H 0.027 0.973 36 H 0.077 0.923 37 H 0.183 0.817 38 H 0.190 0.810 39 H 0.198 0.802 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 17.471 14.524 0.811 22.734 hybrid contribution -1.031 -1.007 0.508 1.528 sum 16.440 13.518 1.319 21.325 Atomic orbital electron populations 1.22101 0.93809 1.02972 1.02910 1.21086 0.96599 0.97645 0.94363 1.21756 1.00719 0.93120 1.03522 1.20189 0.91494 0.88291 1.04404 0.84095 1.24267 0.80706 0.93381 0.71532 1.90646 1.57440 1.48151 1.46671 1.86640 1.25222 1.31705 1.82680 1.23147 0.97258 0.77649 1.00584 1.18935 0.87896 0.96602 0.96767 1.21354 0.92706 0.92361 1.52676 0.92037 1.25911 0.96459 1.02581 0.94066 1.70071 1.01494 1.34518 1.50256 0.85429 0.77217 0.78750 0.79244 1.19143 1.20342 1.19206 1.20297 0.94227 1.01231 0.97263 1.21877 0.94935 0.95650 0.96723 1.22496 0.94926 1.00615 1.00400 1.23360 1.01659 0.92648 0.89522 1.67677 1.08239 1.17963 1.28674 1.22397 0.90136 0.94778 0.97332 0.91338 0.91354 0.92763 0.91630 0.92816 0.91221 0.90714 0.92680 0.92651 0.97391 0.97332 0.92305 0.81729 0.80973 0.80240 0.85063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 8.68 71.99 0.62 -3.24 16 2 C -0.08 -1.66 2.32 -10.79 -0.03 -1.68 16 3 C -0.13 -2.05 8.95 71.98 0.64 -1.41 16 4 C -0.02 -0.57 2.11 -12.29 -0.03 -0.60 16 5 H 0.14 2.59 7.93 -2.39 -0.02 2.57 16 6 C 0.46 15.52 7.06 71.23 0.50 16.03 16 7 O -0.54 -21.56 14.85 21.97 0.33 -21.24 16 8 O -0.35 -13.36 7.14 -51.44 -0.37 -13.73 16 9 C 0.09 3.91 5.40 71.98 0.39 4.30 16 10 C 0.04 1.87 5.35 29.85 0.16 2.03 16 11 C -0.55 -31.46 9.11 25.60 0.23 -31.23 16 12 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 13 C 0.01 0.52 5.46 84.66 0.46 0.98 16 14 N -0.92 -55.02 13.29 21.45 0.28 -54.73 16 15 Si 0.97 43.69 29.54 68.60 2.03 45.71 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 17 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 C -0.13 -2.94 3.14 -19.77 -0.06 -3.01 16 20 C -0.07 -1.12 9.81 22.47 0.22 -0.90 16 21 C -0.17 -2.42 10.11 22.36 0.23 -2.20 16 22 C 0.08 1.60 11.18 84.69 0.95 2.55 16 23 N -0.52 -13.77 10.36 -195.84 -2.03 -15.80 16 24 C 0.11 3.02 9.12 84.67 0.77 3.79 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.05 1.71 5.32 -2.39 -0.01 1.69 16 28 H 0.07 1.52 7.43 -2.39 -0.02 1.50 16 29 H 0.05 0.84 7.22 -2.38 -0.02 0.83 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.05 2.49 8.13 -2.38 -0.02 2.47 16 33 H 0.06 2.49 8.13 -2.39 -0.02 2.47 16 34 H 0.01 0.43 8.14 -2.38 -0.02 0.42 16 35 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 37 H 0.17 1.73 8.00 -2.91 -0.02 1.71 16 38 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 39 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.13 3.89 7.53 -2.91 -0.02 3.86 16 Total: -1.00 -70.30 335.03 6.32 -63.98 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.01 Total: 10.39 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 5.07 Total: -14.59 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -1.74 Total: -70.53 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -0.04 Total: -34.97 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -70.30 6.32 -63.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797903084.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.242 kcal (2) G-P(sol) polarization free energy of solvation -70.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds