Wall clock time and date at job start Mon Mar 30 2020 01:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 H 1.09002 * 109.47153 * 60.00231 * 4 2 1 6 6 C 1.50697 * 109.47466 * 300.00004 * 4 2 1 7 7 O 1.20822 * 120.00115 * 240.00066 * 6 4 2 8 8 O 1.34234 * 119.99749 * 59.99914 * 6 4 2 9 9 C 1.45203 * 117.00028 * 179.97438 * 8 6 4 10 10 C 1.52996 * 109.47034 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.47076 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99664 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00290 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99520 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00000 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47531 * 60.00054 * 15 13 11 17 17 H 1.48503 * 109.47309 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47191 * 299.99835 * 15 13 11 19 19 C 1.50699 * 109.47078 * 180.02562 * 4 2 1 20 20 C 1.38678 * 120.41749 * 239.72150 * 19 4 2 21 21 C 1.38632 * 118.41655 * 179.78395 * 20 19 4 22 22 C 1.38226 * 119.16180 * 0.51186 * 21 20 19 23 23 N 1.31855 * 120.76537 * 359.72741 * 22 21 20 24 24 C 1.31886 * 121.72421 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 26 26 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 28 28 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 29 29 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 30 30 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 32 32 H 1.09004 * 109.47093 * 300.00565 * 9 8 6 33 33 H 1.09002 * 109.46827 * 59.99933 * 9 8 6 34 34 H 1.08991 * 109.47430 * 300.00133 * 10 9 8 35 35 H 1.09002 * 109.46790 * 60.00316 * 10 9 8 36 36 H 0.97000 * 119.99382 * 180.02562 * 14 13 11 37 37 H 1.07991 * 120.79504 * 0.02616 * 20 19 4 38 38 H 1.08007 * 120.41558 * 180.22309 * 21 20 19 39 39 H 1.08004 * 119.61814 * 179.75157 * 22 21 20 40 40 H 1.07990 * 119.61822 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6766 -0.2073 -2.1392 6 6 1.5376 -2.1420 -1.2494 7 8 2.3227 -3.0603 -1.2495 8 8 0.2179 -2.3872 -1.2493 9 6 -0.1939 -3.7796 -1.2500 10 6 -1.7218 -3.8596 -1.2492 11 6 -2.1491 -5.3047 -1.2493 12 1 -1.4053 -6.0878 -1.2494 13 6 -3.4897 -5.6273 -1.2492 14 7 -4.3953 -4.6737 -1.2485 15 14 -4.0193 -7.4186 -1.2486 16 1 -3.4884 -8.0914 -0.0358 17 1 -5.5023 -7.4964 -1.2479 18 1 -3.4884 -8.0922 -2.4609 19 6 3.5469 -0.7218 -1.2490 20 6 4.2495 -0.1290 -2.2874 21 6 5.6349 -0.1495 -2.2428 22 6 6.2655 -0.7652 -1.1780 23 7 5.5650 -1.3234 -0.2103 24 6 4.2462 -1.3176 -0.2168 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9562 0.8901 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 0.1958 -4.2733 -2.1403 33 1 0.1960 -4.2742 -0.3603 34 1 -2.1110 -3.3661 -0.3588 35 1 -2.1119 -3.3649 -2.1387 36 1 -5.3384 -4.9007 -1.2481 37 1 3.7297 0.3410 -3.1091 38 1 6.2142 0.3057 -3.0326 39 1 7.3445 -0.7891 -1.1379 40 1 3.7064 -1.7854 0.5932 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797903085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:53 Heat of formation + Delta-G solvation = -73.786505 kcal Electronic energy + Delta-G solvation = -21382.220987 eV Core-core repulsion = 18161.403022 eV Total energy + Delta-G solvation = -3220.817965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.95943 -39.65720 -36.67264 -36.07259 -33.35774 -32.65583 -31.53964 -30.36792 -28.02845 -26.98604 -25.01971 -23.79966 -22.87055 -21.56206 -20.74606 -19.88557 -17.61072 -17.26453 -16.61196 -16.13217 -15.99684 -15.85646 -15.31426 -14.55732 -14.39680 -14.04543 -13.61948 -13.31949 -13.21070 -13.20485 -12.70160 -12.50007 -12.35500 -12.14763 -12.06969 -11.43825 -11.17200 -11.02334 -10.88100 -10.79989 -10.71401 -10.57229 -10.21937 -9.91407 -9.62832 -9.61739 -9.54653 -9.32258 -9.07416 -8.45663 -6.12091 -4.16444 0.95458 1.15647 2.49652 3.09060 3.29135 3.33230 3.36943 3.74948 4.19433 4.37291 4.49013 4.53579 4.70314 4.80632 4.86280 4.96574 5.08507 5.24581 5.26345 5.27264 5.43789 5.48960 5.65136 5.67650 5.81406 5.93373 5.93911 6.04131 6.06869 6.07840 6.09045 6.25073 6.55486 6.58168 6.66131 6.96978 7.53194 7.59900 7.84505 7.87259 8.15359 8.23856 8.88824 9.48103 10.99278 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028090 B = 0.003669 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.556989 B = 7628.644752 C = 8270.587826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.083 4.083 3 C -0.143 4.143 4 C -0.035 4.035 5 H 0.115 0.885 6 C 0.459 3.541 7 O -0.510 6.510 8 O -0.346 6.346 9 C 0.071 3.929 10 C 0.026 3.974 11 C -0.528 4.528 12 H 0.058 0.942 13 C 0.062 3.938 14 N -0.890 5.890 15 Si 0.899 3.101 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.117 4.117 20 C -0.066 4.066 21 C -0.176 4.176 22 C 0.095 3.905 23 N -0.485 5.485 24 C 0.134 3.866 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.264 0.736 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.154 0.846 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.794 14.128 -0.319 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.101 4.101 3 C -0.200 4.200 4 C -0.055 4.055 5 H 0.133 0.867 6 C 0.301 3.699 7 O -0.398 6.398 8 O -0.262 6.262 9 C -0.001 4.001 10 C -0.011 4.011 11 C -0.566 4.566 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.528 5.528 15 Si 0.726 3.274 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.119 4.119 20 C -0.092 4.092 21 C -0.196 4.196 22 C -0.062 4.062 23 N -0.193 5.193 24 C -0.023 4.023 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.171 0.829 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 16.234 13.445 0.378 21.082 hybrid contribution -0.745 -0.750 -0.871 1.370 sum 15.489 12.694 -0.492 20.032 Atomic orbital electron populations 1.22143 0.92892 1.05070 1.01846 1.21104 0.97581 0.96134 0.95326 1.21828 1.00805 0.95096 1.02309 1.20074 0.91059 0.91631 1.02769 0.86676 1.23262 0.82038 0.91528 0.73033 1.90660 1.57135 1.46706 1.45345 1.86598 1.23465 1.33927 1.82248 1.23680 0.99769 0.75741 1.00960 1.19151 0.85372 0.97718 0.98821 1.20948 0.92042 0.91279 1.52333 0.92360 1.24968 0.96505 0.97754 0.94831 1.69958 1.01035 1.32143 1.49692 0.86543 0.77421 0.84590 0.78809 1.20051 1.21112 1.20074 1.20324 0.94725 1.00286 0.96610 1.21462 0.94283 0.96486 0.96965 1.22077 0.95030 1.02139 1.00364 1.22783 1.00340 0.93272 0.89795 1.67731 1.08147 1.16542 1.26880 1.22539 0.89661 0.93358 0.96776 0.92276 0.89279 0.92480 0.90587 0.92048 0.92829 0.92283 0.92405 0.92300 0.95335 0.95397 0.92651 0.84760 0.84777 0.82903 0.83164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 8.67 37.16 0.32 -1.65 16 2 C -0.08 -0.91 2.32 -90.62 -0.21 -1.12 16 3 C -0.14 -1.26 8.95 37.16 0.33 -0.93 16 4 C -0.04 -0.43 2.11 -92.93 -0.20 -0.63 16 5 H 0.12 1.21 7.93 -51.93 -0.41 0.79 16 6 C 0.46 7.69 7.07 36.00 0.25 7.94 16 7 O -0.51 -9.95 14.87 -18.75 -0.28 -10.23 16 8 O -0.35 -6.48 7.14 -39.27 -0.28 -6.76 16 9 C 0.07 1.54 5.40 37.16 0.20 1.74 16 10 C 0.03 0.68 5.35 -27.89 -0.15 0.53 16 11 C -0.53 -14.71 9.11 -34.44 -0.31 -15.03 16 12 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 15 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 C -0.12 -1.42 3.14 -104.48 -0.33 -1.75 16 20 C -0.07 -0.66 9.81 -39.27 -0.39 -1.05 16 21 C -0.18 -1.61 10.11 -39.44 -0.40 -2.01 16 22 C 0.09 1.00 11.18 -17.55 -0.20 0.80 16 23 N -0.48 -6.53 10.36 -13.25 -0.14 -6.67 16 24 C 0.13 1.81 9.13 -17.55 -0.16 1.65 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.09 1.35 5.33 -51.93 -0.28 1.08 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.86 7.41 -51.93 -0.38 0.47 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.48 7.22 -51.93 -0.37 0.11 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 1.27 8.13 -51.93 -0.42 0.84 16 33 H 0.06 1.28 8.13 -51.93 -0.42 0.85 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.13 1.02 8.00 -52.49 -0.42 0.60 16 38 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 39 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 40 H 0.15 2.05 7.53 -52.49 -0.40 1.65 16 LS Contribution 335.04 15.07 5.05 5.05 Total: -1.00 -31.67 335.04 -7.29 -38.96 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -6.03 Total: -1.43 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -1.33 Total: -9.86 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.60 Total: -32.01 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.56 Total: -16.99 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.67 -7.29 -38.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797903085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.830 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds