Wall clock time and date at job start Mon Mar 30 2020 01:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47147 * 2 1 4 4 C 1.53002 * 109.47147 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.46938 * 304.99963 * 4 3 2 6 6 C 1.50703 * 109.47058 * 65.00015 * 4 3 2 7 7 O 1.20830 * 119.99635 * 119.99523 * 6 4 3 8 8 O 1.34228 * 120.00072 * 300.00046 * 6 4 3 9 9 C 1.45193 * 116.99805 * 179.97438 * 8 6 4 10 10 C 1.53009 * 109.46942 * 179.97438 * 9 8 6 11 11 C 1.50699 * 109.46951 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00504 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99932 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00430 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99909 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47253 * 89.99768 * 15 13 11 17 17 H 1.48500 * 109.47414 * 209.99903 * 15 13 11 18 18 H 1.48498 * 109.46984 * 329.99937 * 15 13 11 19 19 C 1.50703 * 109.46845 * 184.99801 * 4 3 2 20 20 C 1.38225 * 119.61869 * 274.99900 * 19 4 3 21 21 C 1.38635 * 119.15939 * 179.97438 * 20 19 4 22 22 C 1.38675 * 118.41956 * 0.02562 * 21 20 19 23 23 C 1.38186 * 119.16332 * 0.27967 * 22 21 20 24 24 N 1.31860 * 119.61591 * 94.98255 * 19 4 3 25 25 H 1.08989 * 109.47160 * 60.00328 * 1 2 3 26 26 H 1.09003 * 109.46868 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46824 * 299.99880 * 1 2 3 28 28 H 1.09002 * 109.47243 * 240.00002 * 2 1 3 29 29 H 1.09004 * 109.47264 * 120.00157 * 2 1 3 30 30 H 1.09002 * 109.47047 * 59.99882 * 3 2 1 31 31 H 1.09004 * 109.47167 * 300.00217 * 3 2 1 32 32 H 1.08998 * 109.47657 * 299.99955 * 9 8 6 33 33 H 1.09002 * 109.47254 * 60.00282 * 9 8 6 34 34 H 1.08998 * 109.47211 * 300.00599 * 10 9 8 35 35 H 1.09002 * 109.46612 * 60.00260 * 10 9 8 36 36 H 0.97000 * 120.00273 * 180.02562 * 14 13 11 37 37 H 1.07997 * 120.42054 * 0.02562 * 20 19 4 38 38 H 1.07998 * 120.78847 * 180.02562 * 21 20 19 39 39 H 1.08002 * 120.41399 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.61418 * 179.70216 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0729 0.8418 -1.2868 7 8 4.7678 1.4961 -2.0277 8 8 3.7488 -0.4199 -1.6104 9 6 4.2680 -0.9326 -2.8656 10 6 3.7971 -2.3752 -3.0611 11 6 4.3365 -2.9076 -4.3636 12 1 4.9538 -2.2800 -4.9893 13 6 4.0419 -4.1959 -4.7567 14 7 4.5122 -4.6603 -5.8936 15 14 2.9736 -5.2812 -3.6749 16 1 1.5480 -5.1052 -4.0514 17 1 3.3630 -6.7021 -3.8611 18 1 3.1606 -4.8991 -2.2522 19 6 4.0722 2.8579 0.1244 20 6 4.2017 3.6385 -1.0090 21 6 4.6641 4.9394 -0.8841 22 6 4.9809 5.4086 0.3819 23 6 4.8318 4.5678 1.4684 24 7 4.3828 3.3376 1.3128 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9041 -0.3167 -3.6880 33 1 5.3575 -0.9059 -2.8461 34 1 4.1612 -2.9909 -2.2386 35 1 2.7075 -2.4022 -3.0804 36 1 4.3047 -5.5666 -6.1703 37 1 3.9451 3.2401 -1.9795 38 1 4.7749 5.5725 -1.7520 39 1 5.3443 6.4167 0.5163 40 1 5.0810 4.9241 2.4570 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799533654.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:44 Heat of formation + Delta-G solvation = -67.919847 kcal Electronic energy + Delta-G solvation = -21276.781674 eV Core-core repulsion = 18056.218106 eV Total energy + Delta-G solvation = -3220.563567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.99838 -39.68954 -36.46538 -35.87369 -33.32013 -32.75484 -32.18861 -30.82539 -29.31354 -25.65059 -24.93212 -23.67247 -22.78699 -21.54049 -20.64835 -20.25167 -17.66083 -17.02278 -16.96085 -16.43781 -15.98650 -15.88149 -15.33128 -14.55820 -14.29870 -14.15636 -13.82282 -13.61639 -13.42004 -13.19655 -13.01657 -12.55498 -12.33069 -12.18339 -11.73783 -11.67060 -11.34024 -11.10639 -10.94796 -10.75403 -10.53672 -10.48464 -10.04888 -9.92751 -9.78293 -9.71587 -9.56572 -9.36434 -9.05609 -8.64327 -6.14873 -4.16319 0.95102 1.19259 2.38189 2.89351 3.26379 3.34154 3.38130 3.67474 4.04994 4.36766 4.52375 4.71614 4.76882 4.88432 4.97217 5.01284 5.09206 5.15022 5.18785 5.31326 5.48822 5.57007 5.62515 5.71591 5.80215 5.83395 5.92323 5.94113 6.02638 6.11446 6.13086 6.27100 6.40186 6.51556 6.55303 6.78221 7.14647 7.19290 7.60026 7.81643 8.03817 8.37359 8.86674 9.44603 10.97686 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023701 B = 0.004044 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.115385 B = 6922.830181 C = 7771.482323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C -0.100 4.100 4 C -0.033 4.033 5 H 0.125 0.875 6 C 0.465 3.535 7 O -0.509 6.509 8 O -0.348 6.348 9 C 0.079 3.921 10 C -0.008 4.008 11 C -0.528 4.528 12 H 0.075 0.925 13 C 0.073 3.927 14 N -0.897 5.897 15 Si 0.881 3.119 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.262 1.262 19 C 0.130 3.870 20 C -0.132 4.132 21 C -0.083 4.083 22 C -0.173 4.173 23 C 0.090 3.910 24 N -0.477 5.477 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.028 0.972 35 H 0.024 0.976 36 H 0.266 0.734 37 H 0.151 0.849 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.680 17.379 14.722 23.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C -0.138 4.138 4 C -0.053 4.053 5 H 0.143 0.857 6 C 0.307 3.693 7 O -0.398 6.398 8 O -0.264 6.264 9 C 0.007 3.993 10 C -0.046 4.046 11 C -0.566 4.566 12 H 0.093 0.907 13 C -0.130 4.130 14 N -0.535 5.535 15 Si 0.707 3.293 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.187 1.187 19 C -0.007 4.007 20 C -0.151 4.151 21 C -0.109 4.109 22 C -0.193 4.193 23 C -0.067 4.067 24 N -0.186 5.186 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.168 0.832 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.558 16.834 15.076 23.053 hybrid contribution -0.140 0.022 -0.461 0.483 sum -4.698 16.855 14.615 22.798 Atomic orbital electron populations 1.21732 0.95791 1.01829 1.01297 1.21825 0.95859 0.95415 1.04575 1.21553 0.90031 0.99027 1.03202 1.19817 0.98117 0.91923 0.95456 0.85695 1.23152 0.77611 0.81154 0.87372 1.90618 1.35857 1.61232 1.52077 1.86529 1.68726 1.28045 1.43144 1.23441 0.98647 0.96979 0.80266 1.19623 0.97298 0.89329 0.98338 1.20836 1.33154 0.99153 1.03447 0.90697 1.24936 0.95494 0.97629 0.94927 1.69894 1.45038 1.17135 1.21422 0.86760 0.80977 0.79749 0.81789 1.20032 1.21184 1.18688 1.20465 0.96520 0.94703 0.89060 1.22415 0.98188 0.93671 1.00868 1.21652 0.96076 0.95481 0.97705 1.22150 1.01909 1.01363 0.93852 1.22634 0.95867 0.89074 0.99129 1.67311 1.10691 1.14983 1.25609 0.92859 0.92457 0.93197 0.88868 0.91551 0.90318 0.91331 0.91639 0.91656 0.95349 0.95772 0.92418 0.83190 0.84812 0.84941 0.82740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.16 0.37 -1.17 16 2 C -0.14 -1.63 5.57 -26.73 -0.15 -1.78 16 3 C -0.10 -1.12 4.65 -26.73 -0.12 -1.25 16 4 C -0.03 -0.43 2.64 -92.92 -0.25 -0.68 16 5 H 0.13 1.54 8.14 -51.93 -0.42 1.12 16 6 C 0.46 7.53 7.01 36.01 0.25 7.78 16 7 O -0.51 -9.25 12.86 -18.75 -0.24 -9.49 16 8 O -0.35 -6.18 7.36 -39.25 -0.29 -6.46 16 9 C 0.08 1.63 5.40 37.16 0.20 1.83 16 10 C -0.01 -0.20 4.42 -27.88 -0.12 -0.32 16 11 C -0.53 -14.78 9.66 -34.44 -0.33 -15.11 16 12 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 13 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 14 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 15 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 19 C 0.13 1.74 5.69 -82.58 -0.47 1.27 16 20 C -0.13 -1.71 8.27 -39.44 -0.33 -2.04 16 21 C -0.08 -0.88 10.18 -39.27 -0.40 -1.28 16 22 C -0.17 -1.60 10.11 -39.44 -0.40 -1.99 16 23 C 0.09 0.92 11.18 -17.55 -0.20 0.73 16 24 N -0.48 -6.14 10.27 -9.47 -0.10 -6.23 16 25 H 0.05 0.54 8.14 -51.94 -0.42 0.12 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.09 1.32 5.46 -51.93 -0.28 1.03 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 33 H 0.07 1.37 8.13 -51.93 -0.42 0.95 16 34 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 35 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 36 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.15 2.09 5.95 -52.49 -0.31 1.78 16 38 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 40 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 332.78 15.07 5.01 5.01 Total: -1.00 -31.37 332.78 -7.57 -38.94 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.02 Total: 0.20 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -2.04 Total: -12.05 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.68 Total: -32.61 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.53 Total: -15.96 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.37 -7.57 -38.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799533654.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.983 kcal (2) G-P(sol) polarization free energy of solvation -31.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds