Wall clock time and date at job start Mon Mar 30 2020 01:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47147 * 2 1 4 4 C 1.53002 * 109.47147 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.46938 * 304.99963 * 4 3 2 6 6 C 1.50703 * 109.47058 * 65.00015 * 4 3 2 7 7 O 1.20830 * 119.99635 * 119.99523 * 6 4 3 8 8 O 1.34228 * 120.00072 * 300.00046 * 6 4 3 9 9 C 1.45193 * 116.99805 * 179.97438 * 8 6 4 10 10 C 1.53009 * 109.46942 * 179.97438 * 9 8 6 11 11 C 1.50699 * 109.46951 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00504 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99932 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00430 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99909 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47253 * 89.99768 * 15 13 11 17 17 H 1.48500 * 109.47414 * 209.99903 * 15 13 11 18 18 H 1.48498 * 109.46984 * 329.99937 * 15 13 11 19 19 C 1.50703 * 109.46845 * 184.99801 * 4 3 2 20 20 C 1.38225 * 119.61869 * 274.99900 * 19 4 3 21 21 C 1.38635 * 119.15939 * 179.97438 * 20 19 4 22 22 C 1.38675 * 118.41956 * 0.02562 * 21 20 19 23 23 C 1.38186 * 119.16332 * 0.27967 * 22 21 20 24 24 N 1.31860 * 119.61591 * 94.98255 * 19 4 3 25 25 H 1.08989 * 109.47160 * 60.00328 * 1 2 3 26 26 H 1.09003 * 109.46868 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46824 * 299.99880 * 1 2 3 28 28 H 1.09002 * 109.47243 * 240.00002 * 2 1 3 29 29 H 1.09004 * 109.47264 * 120.00157 * 2 1 3 30 30 H 1.09002 * 109.47047 * 59.99882 * 3 2 1 31 31 H 1.09004 * 109.47167 * 300.00217 * 3 2 1 32 32 H 1.08998 * 109.47657 * 299.99955 * 9 8 6 33 33 H 1.09002 * 109.47254 * 60.00282 * 9 8 6 34 34 H 1.08998 * 109.47211 * 300.00599 * 10 9 8 35 35 H 1.09002 * 109.46612 * 60.00260 * 10 9 8 36 36 H 0.97000 * 120.00273 * 180.02562 * 14 13 11 37 37 H 1.07997 * 120.42054 * 0.02562 * 20 19 4 38 38 H 1.07998 * 120.78847 * 180.02562 * 21 20 19 39 39 H 1.08002 * 120.41399 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.61418 * 179.70216 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0729 0.8418 -1.2868 7 8 4.7678 1.4961 -2.0277 8 8 3.7488 -0.4199 -1.6104 9 6 4.2680 -0.9326 -2.8656 10 6 3.7971 -2.3752 -3.0611 11 6 4.3365 -2.9076 -4.3636 12 1 4.9538 -2.2800 -4.9893 13 6 4.0419 -4.1959 -4.7567 14 7 4.5122 -4.6603 -5.8936 15 14 2.9736 -5.2812 -3.6749 16 1 1.5480 -5.1052 -4.0514 17 1 3.3630 -6.7021 -3.8611 18 1 3.1606 -4.8991 -2.2522 19 6 4.0722 2.8579 0.1244 20 6 4.2017 3.6385 -1.0090 21 6 4.6641 4.9394 -0.8841 22 6 4.9809 5.4086 0.3819 23 6 4.8318 4.5678 1.4684 24 7 4.3828 3.3376 1.3128 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9041 -0.3167 -3.6880 33 1 5.3575 -0.9059 -2.8461 34 1 4.1612 -2.9909 -2.2386 35 1 2.7075 -2.4022 -3.0804 36 1 4.3047 -5.5666 -6.1703 37 1 3.9451 3.2401 -1.9795 38 1 4.7749 5.5725 -1.7520 39 1 5.3443 6.4167 0.5163 40 1 5.0810 4.9241 2.4570 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799533654.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:44 Heat of formation + Delta-G solvation = -85.364924 kcal Electronic energy + Delta-G solvation = -21277.538149 eV Core-core repulsion = 18056.218106 eV Total energy + Delta-G solvation = -3221.320043 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.14614 -40.77323 -37.89017 -36.88508 -35.37544 -33.60049 -33.09228 -32.76896 -30.25197 -27.37089 -26.01936 -24.52629 -23.98667 -22.71656 -22.23219 -21.42933 -19.25900 -18.53280 -17.99042 -17.88252 -17.21630 -16.86347 -16.33697 -16.21973 -15.71089 -15.32958 -14.98177 -14.73675 -14.64747 -14.34755 -14.23598 -13.91410 -13.48190 -13.26506 -13.15931 -12.98885 -12.63037 -12.50484 -12.38598 -12.07561 -11.84069 -11.80725 -11.63060 -11.50169 -11.28672 -11.20486 -10.80890 -10.75768 -10.44933 -9.91415 -8.34425 -6.42545 0.10423 0.35419 1.07121 1.38431 1.40236 1.52684 1.58255 2.34482 2.81948 3.00753 3.11637 3.44574 3.82994 3.92002 3.95649 4.06810 4.16898 4.18046 4.22590 4.25687 4.28278 4.44170 4.60531 4.65498 4.69778 4.79156 4.86089 4.92540 5.00247 5.04769 5.20693 5.29009 5.29916 5.30619 5.41274 5.48489 5.52958 5.61121 5.78277 6.15536 6.63351 6.64736 6.97016 7.22639 8.81718 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023701 B = 0.004044 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.115385 B = 6922.830181 C = 7771.482323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C -0.091 4.091 4 C -0.024 4.024 5 H 0.134 0.866 6 C 0.463 3.537 7 O -0.530 6.530 8 O -0.343 6.343 9 C 0.091 3.909 10 C -0.001 4.001 11 C -0.542 4.542 12 H 0.034 0.966 13 C 0.012 3.988 14 N -0.945 5.945 15 Si 0.953 3.047 16 H -0.262 1.262 17 H -0.282 1.282 18 H -0.243 1.243 19 C 0.111 3.889 20 C -0.155 4.155 21 C -0.088 4.088 22 C -0.162 4.162 23 C 0.084 3.916 24 N -0.496 5.496 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.270 0.730 37 H 0.131 0.869 38 H 0.155 0.845 39 H 0.170 0.830 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.816 18.602 17.549 26.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C -0.129 4.129 4 C -0.044 4.044 5 H 0.151 0.849 6 C 0.307 3.693 7 O -0.420 6.420 8 O -0.259 6.259 9 C 0.018 3.982 10 C -0.039 4.039 11 C -0.580 4.580 12 H 0.052 0.948 13 C -0.186 4.186 14 N -0.585 5.585 15 Si 0.775 3.225 16 H -0.187 1.187 17 H -0.208 1.208 18 H -0.166 1.166 19 C -0.025 4.025 20 C -0.175 4.175 21 C -0.114 4.114 22 C -0.182 4.182 23 C -0.073 4.073 24 N -0.205 5.205 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.149 0.851 38 H 0.172 0.828 39 H 0.188 0.812 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -5.697 18.078 17.913 26.080 hybrid contribution 0.308 -0.184 -1.356 1.403 sum -5.389 17.893 16.557 24.967 Atomic orbital electron populations 1.21718 0.94623 1.02067 1.02051 1.21801 0.96914 0.95359 1.03602 1.21524 0.88591 0.98937 1.03867 1.19858 0.99200 0.92089 0.93219 0.84869 1.23898 0.76966 0.80213 0.88216 1.90618 1.36856 1.61482 1.53067 1.86551 1.68653 1.29194 1.41488 1.22976 0.97874 0.95755 0.81645 1.19447 0.97674 0.90788 0.95984 1.21123 1.32745 0.99175 1.04936 0.94760 1.25947 0.96990 0.99271 0.96395 1.70043 1.46885 1.17917 1.23635 0.85625 0.79123 0.77313 0.80468 1.18666 1.20762 1.16602 1.20432 0.97827 0.94703 0.89585 1.22365 0.99925 0.95165 1.00048 1.21981 0.95271 0.94750 0.99410 1.22551 1.00151 1.02765 0.92687 1.23284 0.94654 0.88319 1.01018 1.67316 1.11569 1.16460 1.25181 0.93037 0.92495 0.91535 0.91428 0.90811 0.88584 0.91607 0.92288 0.92739 0.94715 0.94550 0.92083 0.85103 0.82779 0.81249 0.79568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.91 71.98 0.71 -2.06 16 2 C -0.14 -3.07 5.57 30.59 0.17 -2.90 16 3 C -0.09 -1.93 4.65 30.59 0.14 -1.79 16 4 C -0.02 -0.61 2.64 -12.28 -0.03 -0.64 16 5 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 6 C 0.46 15.15 7.01 71.24 0.50 15.65 16 7 O -0.53 -19.85 12.86 21.95 0.28 -19.57 16 8 O -0.34 -12.19 7.36 -51.40 -0.38 -12.56 16 9 C 0.09 3.82 5.40 71.99 0.39 4.21 16 10 C 0.00 -0.07 4.42 29.85 0.13 0.06 16 11 C -0.54 -31.19 9.66 25.60 0.25 -30.95 16 12 H 0.03 2.18 7.99 -2.91 -0.02 2.15 16 13 C 0.01 0.69 5.47 84.65 0.46 1.15 16 14 N -0.95 -58.70 13.96 21.45 0.30 -58.41 16 15 Si 0.95 43.11 27.47 68.60 1.88 45.00 16 16 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.24 -10.15 6.54 99.48 0.65 -9.50 16 19 C 0.11 2.89 5.69 42.55 0.24 3.13 16 20 C -0.16 -3.99 8.27 22.36 0.19 -3.81 16 21 C -0.09 -1.71 10.18 22.47 0.23 -1.48 16 22 C -0.16 -2.47 10.11 22.36 0.23 -2.24 16 23 C 0.08 1.48 11.18 84.67 0.95 2.43 16 24 N -0.50 -11.84 10.27 -183.88 -1.89 -13.73 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.86 5.46 -2.39 -0.01 1.84 16 29 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.06 2.52 8.13 -2.39 -0.02 2.50 16 33 H 0.05 2.38 8.13 -2.39 -0.02 2.36 16 34 H 0.03 1.58 7.20 -2.39 -0.02 1.57 16 35 H 0.04 1.62 7.57 -2.39 -0.02 1.60 16 36 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 37 H 0.13 3.79 5.95 -2.91 -0.02 3.77 16 38 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 39 H 0.17 1.29 8.06 -2.91 -0.02 1.26 16 40 H 0.19 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -69.45 332.78 5.71 -63.73 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.96 Total: 14.77 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 4.55 Total: -19.24 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -1.59 Total: -72.13 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.10 Total: -32.13 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.88 Total: 45.00 kcal Total: -69.45 5.71 -63.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799533654.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.632 kcal (2) G-P(sol) polarization free energy of solvation -69.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds