Wall clock time and date at job start Mon Mar 30 2020 01:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47069 * 304.99600 * 4 3 2 6 6 C 1.50703 * 109.46801 * 184.99876 * 4 3 2 7 7 O 1.20825 * 119.99940 * 239.99574 * 6 4 3 8 8 O 1.34237 * 120.00016 * 60.00027 * 6 4 3 9 9 C 1.45200 * 116.99747 * 179.97438 * 8 6 4 10 10 C 1.53006 * 109.46567 * 180.02562 * 9 8 6 11 11 C 1.50698 * 109.46641 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00178 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00048 * 179.97438 * 11 10 9 14 14 N 1.31522 * 119.99847 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00477 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47108 * 90.00048 * 15 13 11 17 17 H 1.48494 * 109.47422 * 210.00422 * 15 13 11 18 18 H 1.48498 * 109.46866 * 330.00224 * 15 13 11 19 19 C 1.50697 * 109.47204 * 65.00067 * 4 3 2 20 20 C 1.38232 * 119.61923 * 84.73171 * 19 4 3 21 21 C 1.38624 * 119.15905 * 179.75402 * 20 19 4 22 22 C 1.38681 * 118.42184 * 0.50221 * 21 20 19 23 23 C 1.38182 * 119.15992 * 359.73378 * 22 21 20 24 24 N 1.31856 * 119.61451 * 264.99531 * 19 4 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 26 26 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 28 28 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 29 29 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 30 30 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 31 31 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 32 32 H 1.09001 * 109.47001 * 299.99744 * 9 8 6 33 33 H 1.08996 * 109.47039 * 60.00486 * 9 8 6 34 34 H 1.09001 * 109.47208 * 299.99565 * 10 9 8 35 35 H 1.08996 * 109.47075 * 59.99907 * 10 9 8 36 36 H 0.96991 * 120.00054 * 179.97438 * 14 13 11 37 37 H 1.07993 * 120.41711 * 359.97352 * 20 19 4 38 38 H 1.07998 * 120.79097 * 180.26000 * 21 20 19 39 39 H 1.07995 * 120.41924 * 179.70922 * 22 21 20 40 40 H 1.08001 * 119.61449 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9336 0.8528 0.8410 6 6 4.0724 2.8577 0.1232 7 8 4.7668 3.3305 -0.7453 8 8 3.7486 3.5933 1.1984 9 6 4.2683 4.9481 1.2510 10 6 3.7977 5.6250 2.5400 11 6 4.3376 7.0308 2.5950 12 1 4.9550 7.4040 1.7912 13 6 4.0434 7.8407 3.6713 14 7 3.2920 7.3861 4.6504 15 14 4.7132 9.5831 3.7399 16 1 3.7482 10.5101 3.0959 17 1 4.9122 9.9816 5.1565 18 1 6.0116 9.6429 3.0219 19 6 4.0718 0.8421 -1.2886 20 6 4.1951 1.6390 -2.4113 21 6 4.6624 1.0781 -3.5897 22 6 4.9798 -0.2719 -3.5978 23 6 4.8260 -1.0066 -2.4376 24 7 4.3831 -0.4385 -1.3329 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 5.3578 4.9202 1.2325 33 1 3.9045 5.5104 0.3912 34 1 2.7082 5.6528 2.5589 35 1 4.1618 5.0624 3.3996 36 1 3.0854 7.9556 5.4078 37 1 3.9340 2.6860 -2.3700 38 1 4.7730 1.6772 -4.4814 39 1 5.3422 -0.7431 -4.4994 40 1 5.0706 -2.0586 -2.4357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799533655.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:47 Heat of formation + Delta-G solvation = -72.940172 kcal Electronic energy + Delta-G solvation = -21029.962236 eV Core-core repulsion = 17809.180972 eV Total energy + Delta-G solvation = -3220.781265 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.93506 -39.59185 -36.43560 -35.81566 -33.36270 -32.60106 -32.18575 -30.43142 -29.30506 -25.57700 -24.79275 -23.66100 -22.92538 -21.31420 -20.91649 -20.21760 -17.49449 -17.01853 -16.57486 -16.16675 -16.04308 -15.77379 -15.19312 -14.98276 -14.52383 -14.19377 -13.69736 -13.60094 -13.13121 -12.99814 -12.86766 -12.43588 -12.36351 -12.18453 -11.55003 -11.41116 -11.19762 -11.14431 -11.02063 -10.76746 -10.70291 -10.66515 -10.16147 -9.85509 -9.68287 -9.58326 -9.51781 -9.30829 -9.01587 -8.45896 -6.11931 -4.16468 1.00178 1.23552 2.45104 2.99003 3.27419 3.33720 3.37777 3.72912 4.11964 4.36721 4.57735 4.75145 4.77997 4.88291 4.98495 5.02275 5.11423 5.19581 5.24676 5.32103 5.49308 5.52329 5.65463 5.73478 5.77989 5.85094 6.01995 6.03634 6.05970 6.07116 6.14930 6.18895 6.29242 6.60278 6.61189 6.94556 7.53447 7.60246 7.83872 7.87350 8.12664 8.22745 8.89021 9.48045 10.99522 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023498 B = 0.003566 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.326827 B = 7850.521677 C = 8728.870235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.107 4.107 4 C -0.033 4.033 5 H 0.126 0.874 6 C 0.463 3.537 7 O -0.512 6.512 8 O -0.349 6.349 9 C 0.075 3.925 10 C 0.025 3.975 11 C -0.527 4.527 12 H 0.059 0.941 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.899 3.101 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.272 1.272 19 C 0.135 3.865 20 C -0.133 4.133 21 C -0.084 4.084 22 C -0.174 4.174 23 C 0.089 3.911 24 N -0.474 5.474 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.264 0.736 37 H 0.149 0.851 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.931 -16.777 -13.978 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.145 4.145 4 C -0.053 4.053 5 H 0.143 0.857 6 C 0.305 3.695 7 O -0.402 6.402 8 O -0.265 6.265 9 C 0.002 3.998 10 C -0.013 4.013 11 C -0.565 4.565 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.528 5.528 15 Si 0.727 3.273 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.003 4.003 20 C -0.152 4.152 21 C -0.110 4.110 22 C -0.194 4.194 23 C -0.068 4.068 24 N -0.183 5.183 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.167 0.833 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.892 -17.044 -13.273 21.685 hybrid contribution 0.694 1.578 -0.804 1.902 sum -1.198 -15.466 -14.077 20.947 Atomic orbital electron populations 1.21769 0.95721 1.01493 1.01982 1.21489 0.95660 0.95669 1.02789 1.21613 0.90170 0.98607 1.04092 1.19783 0.98101 0.90446 0.96960 0.85665 1.23163 0.77682 0.88408 0.80199 1.90601 1.36126 1.73013 1.40476 1.86523 1.69110 1.29098 1.41777 1.23689 0.98165 0.75469 1.02441 1.19173 0.97884 0.94381 0.89814 1.20972 1.32486 0.97009 1.06068 0.92283 1.24982 0.94987 0.98804 0.95352 1.69971 1.36896 1.36731 1.09173 0.86473 0.79422 0.84097 0.77332 1.20473 1.21034 1.19728 1.20455 0.96127 0.89766 0.93930 1.22388 0.98287 1.02026 0.92511 1.21627 0.96168 0.94915 0.98251 1.22130 1.02072 0.95230 0.99964 1.22629 0.95939 1.00112 0.88096 1.67342 1.10577 1.11416 1.28940 0.92953 0.92820 0.92344 0.91839 0.91338 0.89120 0.91341 0.92261 0.92225 0.95286 0.95299 0.92685 0.83310 0.84933 0.85054 0.82823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.15 0.37 -1.03 16 2 C -0.12 -1.23 5.71 -26.74 -0.15 -1.38 16 3 C -0.11 -1.26 4.64 -26.73 -0.12 -1.39 16 4 C -0.03 -0.45 2.62 -92.92 -0.24 -0.69 16 5 H 0.13 1.63 8.14 -51.93 -0.42 1.20 16 6 C 0.46 7.94 7.04 36.01 0.25 8.20 16 7 O -0.51 -9.66 12.88 -18.75 -0.24 -9.90 16 8 O -0.35 -6.81 10.03 -39.28 -0.39 -7.20 16 9 C 0.07 1.64 5.40 37.16 0.20 1.84 16 10 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 11 C -0.53 -14.72 9.11 -34.44 -0.31 -15.04 16 12 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 15 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 C 0.13 1.83 4.88 -82.59 -0.40 1.43 16 20 C -0.13 -1.76 8.27 -39.44 -0.33 -2.09 16 21 C -0.08 -0.90 10.18 -39.28 -0.40 -1.30 16 22 C -0.17 -1.64 10.11 -39.44 -0.40 -2.04 16 23 C 0.09 0.92 11.18 -17.55 -0.20 0.73 16 24 N -0.47 -6.07 9.61 -9.47 -0.09 -6.17 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.70 6.89 -51.93 -0.36 0.34 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.09 1.11 8.00 -51.93 -0.42 0.69 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 33 H 0.06 1.28 8.13 -51.93 -0.42 0.85 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.15 2.13 5.97 -52.49 -0.31 1.82 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 339.01 15.07 5.11 5.11 Total: -1.00 -31.00 339.01 -8.01 -39.00 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.12 Total: -1.00 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -1.98 Total: -10.66 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.65 Total: -31.62 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.64 Total: -17.10 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.00 -8.01 -39.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799533655.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.936 kcal (2) G-P(sol) polarization free energy of solvation -30.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds