Wall clock time and date at job start Mon Mar 30 2020 01:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47069 * 304.99600 * 4 3 2 6 6 C 1.50703 * 109.46801 * 184.99876 * 4 3 2 7 7 O 1.20825 * 119.99940 * 239.99574 * 6 4 3 8 8 O 1.34237 * 120.00016 * 60.00027 * 6 4 3 9 9 C 1.45200 * 116.99747 * 179.97438 * 8 6 4 10 10 C 1.53006 * 109.46567 * 180.02562 * 9 8 6 11 11 C 1.50698 * 109.46641 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00178 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00048 * 179.97438 * 11 10 9 14 14 N 1.31522 * 119.99847 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00477 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47108 * 90.00048 * 15 13 11 17 17 H 1.48494 * 109.47422 * 210.00422 * 15 13 11 18 18 H 1.48498 * 109.46866 * 330.00224 * 15 13 11 19 19 C 1.50697 * 109.47204 * 65.00067 * 4 3 2 20 20 C 1.38232 * 119.61923 * 84.73171 * 19 4 3 21 21 C 1.38624 * 119.15905 * 179.75402 * 20 19 4 22 22 C 1.38681 * 118.42184 * 0.50221 * 21 20 19 23 23 C 1.38182 * 119.15992 * 359.73378 * 22 21 20 24 24 N 1.31856 * 119.61451 * 264.99531 * 19 4 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 26 26 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 28 28 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 29 29 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 30 30 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 31 31 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 32 32 H 1.09001 * 109.47001 * 299.99744 * 9 8 6 33 33 H 1.08996 * 109.47039 * 60.00486 * 9 8 6 34 34 H 1.09001 * 109.47208 * 299.99565 * 10 9 8 35 35 H 1.08996 * 109.47075 * 59.99907 * 10 9 8 36 36 H 0.96991 * 120.00054 * 179.97438 * 14 13 11 37 37 H 1.07993 * 120.41711 * 359.97352 * 20 19 4 38 38 H 1.07998 * 120.79097 * 180.26000 * 21 20 19 39 39 H 1.07995 * 120.41924 * 179.70922 * 22 21 20 40 40 H 1.08001 * 119.61449 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9336 0.8528 0.8410 6 6 4.0724 2.8577 0.1232 7 8 4.7668 3.3305 -0.7453 8 8 3.7486 3.5933 1.1984 9 6 4.2683 4.9481 1.2510 10 6 3.7977 5.6250 2.5400 11 6 4.3376 7.0308 2.5950 12 1 4.9550 7.4040 1.7912 13 6 4.0434 7.8407 3.6713 14 7 3.2920 7.3861 4.6504 15 14 4.7132 9.5831 3.7399 16 1 3.7482 10.5101 3.0959 17 1 4.9122 9.9816 5.1565 18 1 6.0116 9.6429 3.0219 19 6 4.0718 0.8421 -1.2886 20 6 4.1951 1.6390 -2.4113 21 6 4.6624 1.0781 -3.5897 22 6 4.9798 -0.2719 -3.5978 23 6 4.8260 -1.0066 -2.4376 24 7 4.3831 -0.4385 -1.3329 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 5.3578 4.9202 1.2325 33 1 3.9045 5.5104 0.3912 34 1 2.7082 5.6528 2.5589 35 1 4.1618 5.0624 3.3996 36 1 3.0854 7.9556 5.4078 37 1 3.9340 2.6860 -2.3700 38 1 4.7730 1.6772 -4.4814 39 1 5.3422 -0.7431 -4.4994 40 1 5.0706 -2.0586 -2.4357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799533655.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:47 Heat of formation + Delta-G solvation = -89.194413 kcal Electronic energy + Delta-G solvation = -21030.667073 eV Core-core repulsion = 17809.180972 eV Total energy + Delta-G solvation = -3221.486102 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.12204 -40.77172 -37.89840 -36.88642 -35.45212 -33.45565 -33.12263 -32.34838 -30.32899 -27.24630 -26.06973 -24.54639 -24.09017 -22.89915 -22.17394 -21.45286 -19.01940 -18.26129 -17.98363 -17.75140 -17.21704 -16.99510 -16.55979 -16.13463 -15.98302 -15.29432 -14.91597 -14.62506 -14.38320 -14.32213 -14.12182 -13.85274 -13.44270 -13.21720 -13.11053 -13.00182 -12.62163 -12.57285 -12.47073 -12.11049 -12.07057 -11.77899 -11.57197 -11.50111 -11.46552 -11.19299 -10.70693 -10.61645 -10.41766 -9.90156 -8.27481 -6.40788 0.12888 0.37811 1.04953 1.40394 1.42618 1.52825 1.62572 2.39216 2.84818 3.06968 3.14271 3.44042 3.82462 3.91646 3.96357 4.07594 4.18923 4.20771 4.22452 4.24029 4.29096 4.42144 4.63952 4.64626 4.68204 4.76578 4.87525 4.90616 5.00720 5.20391 5.22985 5.25031 5.31383 5.32940 5.45995 5.46760 5.51035 5.72972 5.80220 6.05613 6.63234 6.73126 6.99921 7.29017 8.85085 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023498 B = 0.003566 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.326827 B = 7850.521677 C = 8728.870235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.103 4.103 4 C -0.024 4.024 5 H 0.131 0.869 6 C 0.462 3.538 7 O -0.528 6.528 8 O -0.357 6.357 9 C 0.090 3.910 10 C 0.031 3.969 11 C -0.551 4.551 12 H 0.065 0.935 13 C 0.007 3.993 14 N -0.926 5.926 15 Si 0.973 3.027 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.264 1.264 19 C 0.117 3.883 20 C -0.156 4.156 21 C -0.087 4.087 22 C -0.163 4.163 23 C 0.084 3.916 24 N -0.490 5.490 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.009 0.991 35 H 0.006 0.994 36 H 0.268 0.732 37 H 0.130 0.870 38 H 0.154 0.846 39 H 0.169 0.831 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.332 -17.655 -15.603 23.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.141 4.141 4 C -0.044 4.044 5 H 0.149 0.851 6 C 0.306 3.694 7 O -0.418 6.418 8 O -0.273 6.273 9 C 0.017 3.983 10 C -0.006 4.006 11 C -0.589 4.589 12 H 0.083 0.917 13 C -0.192 4.192 14 N -0.565 5.565 15 Si 0.797 3.203 16 H -0.195 1.195 17 H -0.204 1.204 18 H -0.188 1.188 19 C -0.020 4.020 20 C -0.176 4.176 21 C -0.113 4.113 22 C -0.182 4.182 23 C -0.073 4.073 24 N -0.200 5.200 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.027 0.973 35 H 0.024 0.976 36 H 0.077 0.923 37 H 0.148 0.852 38 H 0.172 0.828 39 H 0.187 0.813 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.297 -17.934 -14.912 23.360 hybrid contribution 0.525 1.726 -0.385 1.844 sum -0.772 -16.209 -15.296 22.300 Atomic orbital electron populations 1.21760 0.94680 1.02332 1.02021 1.21411 0.96456 0.94235 1.02660 1.21613 0.88962 0.99816 1.03693 1.19810 0.99086 0.87646 0.97857 0.85126 1.23889 0.77129 0.89337 0.79027 1.90594 1.36832 1.73598 1.40750 1.86511 1.69432 1.28117 1.43251 1.23201 0.97848 0.76823 1.00380 1.18980 0.96411 0.94273 0.90969 1.21370 1.32863 0.98055 1.06565 0.91718 1.25957 0.95044 1.03469 0.94771 1.70092 1.37974 1.38584 1.09856 0.85329 0.79053 0.78338 0.77625 1.19468 1.20417 1.18786 1.20336 0.97569 0.90457 0.93618 1.22328 1.00064 1.01341 0.93850 1.21953 0.95293 0.96042 0.98041 1.22534 1.00239 0.94410 1.00999 1.23277 0.94704 1.01633 0.87688 1.67334 1.11336 1.10898 1.30407 0.92810 0.91570 0.92444 0.92217 0.91117 0.89824 0.91402 0.92336 0.91870 0.97306 0.97580 0.92319 0.85243 0.82785 0.81314 0.79661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.91 71.98 0.71 -1.90 16 2 C -0.11 -2.21 5.71 30.59 0.17 -2.04 16 3 C -0.10 -2.46 4.64 30.59 0.14 -2.32 16 4 C -0.02 -0.67 2.62 -12.29 -0.03 -0.70 16 5 H 0.13 3.43 8.14 -2.39 -0.02 3.41 16 6 C 0.46 16.28 7.04 71.24 0.50 16.78 16 7 O -0.53 -20.34 12.88 21.97 0.28 -20.06 16 8 O -0.36 -14.37 10.03 -51.48 -0.52 -14.88 16 9 C 0.09 4.07 5.40 71.98 0.39 4.46 16 10 C 0.03 1.66 5.35 29.85 0.16 1.82 16 11 C -0.55 -31.24 9.11 25.60 0.23 -31.01 16 12 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 13 C 0.01 0.38 5.46 84.65 0.46 0.84 16 14 N -0.93 -55.42 13.29 21.45 0.28 -55.14 16 15 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 18 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 19 C 0.12 3.14 4.88 42.55 0.21 3.35 16 20 C -0.16 -4.11 8.27 22.36 0.18 -3.93 16 21 C -0.09 -1.72 10.18 22.47 0.23 -1.49 16 22 C -0.16 -2.52 10.11 22.36 0.23 -2.30 16 23 C 0.08 1.51 11.18 84.67 0.95 2.45 16 24 N -0.49 -11.89 9.61 -183.88 -1.77 -13.66 16 25 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 1.26 6.89 -2.39 -0.02 1.24 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 2.10 8.00 -2.39 -0.02 2.08 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 2.62 8.13 -2.39 -0.02 2.60 16 33 H 0.06 2.77 8.13 -2.39 -0.02 2.75 16 34 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.27 14.95 8.31 -92.72 -0.77 14.18 16 37 H 0.13 3.84 5.97 -2.91 -0.02 3.82 16 38 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 39 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.19 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -67.30 339.01 5.86 -61.44 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 1.01 Total: 12.68 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: 4.54 Total: -15.98 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: -1.48 Total: -68.80 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -0.23 Total: -34.94 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -67.30 5.86 -61.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799533655.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.753 kcal (2) G-P(sol) polarization free energy of solvation -67.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds