Wall clock time and date at job start Mon Mar 30 2020 01:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47092 * 2 1 4 4 C 1.53001 * 109.46750 * 240.00533 * 2 1 3 5 5 C 1.50696 * 109.47820 * 59.99597 * 4 2 1 6 6 H 1.08006 * 119.99391 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00544 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00128 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99639 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46813 * 90.00356 * 9 7 5 11 11 H 1.48501 * 109.46946 * 210.00010 * 9 7 5 12 12 H 1.48493 * 109.47155 * 330.00194 * 9 7 5 13 13 C 1.52994 * 109.47430 * 119.99984 * 2 1 3 14 14 O 1.42894 * 109.47208 * 300.00059 * 13 2 1 15 15 C 1.35000 * 116.99943 * 179.97438 * 14 13 2 16 16 O 1.21711 * 120.00149 * 359.97438 * 15 14 13 17 17 C 1.41261 * 119.99933 * 180.02562 * 15 14 13 18 18 C 1.35749 * 119.99663 * 188.38965 * 17 15 14 19 19 C 1.41589 * 120.00408 * 32.31606 * 18 17 15 20 20 C 1.38325 * 126.26393 * 187.22325 * 19 18 17 21 21 C 1.39765 * 107.07286 * 180.02562 * 20 19 18 22 22 C 1.35528 * 107.91463 * 359.76275 * 21 20 19 23 23 N 1.35727 * 108.91900 * 0.39196 * 22 21 20 24 24 H 0.97008 * 125.68746 * 179.86508 * 23 22 21 25 25 H 1.08998 * 109.46896 * 299.99782 * 1 2 3 26 26 H 1.08997 * 109.47566 * 59.99591 * 1 2 3 27 27 H 1.09001 * 109.47098 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47166 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47101 * 300.00467 * 3 2 1 30 30 H 1.08998 * 109.47073 * 60.00326 * 3 2 1 31 31 H 1.09005 * 109.46962 * 179.97438 * 4 2 1 32 32 H 1.09006 * 109.47049 * 299.99154 * 4 2 1 33 33 H 0.97002 * 120.00217 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.47213 * 179.97438 * 13 2 1 35 35 H 1.09001 * 109.47143 * 59.99827 * 13 2 1 36 36 H 1.07998 * 119.99961 * 8.38799 * 17 15 14 37 37 H 1.08002 * 119.99581 * 212.31403 * 18 17 15 38 38 H 1.08000 * 126.46863 * 0.02800 * 20 19 18 39 39 H 1.07997 * 126.04038 * 180.02562 * 21 20 19 40 40 H 1.07997 * 125.54314 * 180.23857 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9169 0.8675 -2.3806 7 6 1.8710 -0.4815 -3.7321 8 7 1.4330 0.1388 -4.8058 9 14 2.9462 -1.9995 -3.9035 10 1 2.0885 -3.2109 -3.9491 11 1 3.7381 -1.9062 -5.1563 12 1 3.8665 -2.0879 -2.7415 13 6 2.0401 -0.7212 1.2492 14 8 1.5638 -0.0476 2.4159 15 6 1.9262 -0.5609 3.6108 16 8 2.6276 -1.5544 3.6589 17 6 1.4904 0.0544 4.8053 18 6 1.9887 -0.3541 6.0001 19 6 3.3201 -0.8278 6.0873 20 6 3.9131 -1.4027 7.1970 21 6 5.2272 -1.7198 6.8420 22 6 5.4116 -1.3485 5.5517 23 7 4.2620 -0.8001 5.0829 24 1 4.1253 -0.4507 4.1883 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7208 -1.2496 32 1 1.6767 -1.7489 -1.2493 33 1 1.6672 -0.1926 -5.6868 34 1 3.1301 -0.7216 1.2489 35 1 1.6767 -1.7489 1.2492 36 1 0.7608 0.8498 4.7680 37 1 1.3695 -0.3176 6.8843 38 1 3.4483 -1.5741 8.1566 39 1 5.9639 -2.1831 7.4815 40 1 6.3256 -1.4672 4.9888 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802249838.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:22 Heat of formation + Delta-G solvation = -17.710350 kcal Electronic energy + Delta-G solvation = -21334.052515 eV Core-core repulsion = 18115.666195 eV Total energy + Delta-G solvation = -3218.386320 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.56485 -40.19657 -37.52575 -35.57399 -34.03690 -32.31699 -31.13804 -28.98952 -27.91785 -26.61131 -26.47461 -24.30989 -22.43545 -21.15448 -20.57643 -19.89702 -18.47113 -17.99555 -17.20833 -16.81378 -16.18139 -15.41557 -14.60570 -14.38115 -14.23865 -14.01431 -13.82970 -13.63518 -13.39488 -12.97855 -12.60873 -12.48586 -12.38758 -12.28163 -12.13705 -11.37875 -11.08181 -11.00861 -10.62270 -10.59863 -10.41272 -10.32718 -10.10077 -9.86659 -9.75816 -9.54574 -9.06666 -9.01866 -8.56190 -7.79832 -6.06324 -4.03812 0.15981 2.33539 2.69215 3.01632 3.14802 3.28562 3.30849 3.36592 3.39459 4.42736 4.77409 4.82161 4.99565 5.13165 5.23305 5.25118 5.30493 5.37333 5.39148 5.66208 5.67612 5.76221 5.94032 6.04323 6.06799 6.09873 6.25044 6.46658 6.53490 6.64577 6.70302 6.71542 6.88162 6.93449 7.03625 7.06645 7.18223 7.32229 7.36185 7.73971 7.91868 8.51232 8.98152 9.55744 11.06408 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028434 B = 0.003738 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.482956 B = 7489.708074 C = 8127.045981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.049 4.049 3 C -0.127 4.127 4 C -0.003 4.003 5 C -0.510 4.510 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.874 3.126 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.267 1.267 13 C 0.075 3.925 14 O -0.340 6.340 15 C 0.487 3.513 16 O -0.529 6.529 17 C -0.271 4.271 18 C 0.060 3.940 19 C -0.008 4.008 20 C -0.135 4.135 21 C -0.219 4.219 22 C 0.031 3.969 23 N -0.513 5.513 24 H 0.418 0.582 25 H 0.041 0.959 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.017 0.983 32 H 0.013 0.987 33 H 0.263 0.737 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.913 -0.393 23.408 23.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.049 4.049 3 C -0.184 4.184 4 C -0.040 4.040 5 C -0.548 4.548 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.702 3.298 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.192 1.192 13 C 0.001 3.999 14 O -0.256 6.256 15 C 0.338 3.662 16 O -0.424 6.424 17 C -0.291 4.291 18 C 0.041 3.959 19 C -0.119 4.119 20 C -0.161 4.161 21 C -0.243 4.243 22 C -0.108 4.108 23 N -0.109 5.109 24 H 0.261 0.739 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.166 0.834 37 H 0.172 0.828 38 H 0.161 0.839 39 H 0.157 0.843 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.059 -0.590 22.975 23.339 hybrid contribution 0.583 -0.959 -0.816 1.387 sum 4.641 -1.549 22.160 22.694 Atomic orbital electron populations 1.21725 0.94335 1.01015 1.01373 1.20574 0.96503 0.96131 0.91671 1.21726 0.99787 0.95504 1.01408 1.19620 0.96187 0.95541 0.92643 1.21044 1.31904 1.13424 0.88430 0.90211 1.24985 0.95702 0.96724 0.95948 1.69894 1.45872 1.40501 0.97882 0.86866 0.81328 0.83989 0.77623 1.20311 1.21382 1.19168 1.23053 0.98448 0.96210 0.82190 1.86259 1.69843 1.54829 1.14635 1.20068 0.77493 0.83374 0.85237 1.90904 1.36759 1.26244 1.88474 1.21222 1.11206 1.06670 0.90015 1.20935 0.90305 0.86732 0.97965 1.18289 0.91210 1.12649 0.89725 1.21529 0.95099 1.01632 0.97793 1.20847 0.97874 1.09789 0.95819 1.22193 0.91339 1.00961 0.96260 1.42683 1.09916 1.45045 1.13251 0.73932 0.93965 0.91003 0.93845 0.93936 0.90978 0.93977 0.96496 0.96872 0.92734 0.92302 0.91955 0.83371 0.82849 0.83939 0.84311 0.81630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.07 37.16 0.30 -2.12 16 2 C -0.05 -0.95 0.61 -154.51 -0.09 -1.05 16 3 C -0.13 -2.38 8.07 37.16 0.30 -2.08 16 4 C 0.00 -0.06 3.11 -27.88 -0.09 -0.15 16 5 C -0.51 -13.89 8.20 -34.44 -0.28 -14.18 16 6 H 0.08 2.30 5.92 -52.48 -0.31 1.99 16 7 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 8 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 9 Si 0.87 21.58 27.47 -169.99 -4.67 16.91 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 13 C 0.07 1.32 4.24 37.15 0.16 1.48 16 14 O -0.34 -5.44 8.76 -41.32 -0.36 -5.81 16 15 C 0.49 7.11 6.44 31.88 0.21 7.32 16 16 O -0.53 -8.75 12.51 -19.43 -0.24 -8.99 16 17 C -0.27 -2.99 9.86 -39.32 -0.39 -3.38 16 18 C 0.06 0.56 9.76 -39.20 -0.38 0.18 16 19 C -0.01 -0.09 5.94 -83.91 -0.50 -0.59 16 20 C -0.14 -1.34 10.86 -38.98 -0.42 -1.76 16 21 C -0.22 -2.16 10.81 -39.98 -0.43 -2.59 16 22 C 0.03 0.32 11.90 -16.80 -0.20 0.12 16 23 N -0.51 -6.17 4.51 -10.57 -0.05 -6.21 16 24 H 0.42 5.28 6.15 -40.82 -0.25 5.03 16 25 H 0.04 0.72 7.68 -51.93 -0.40 0.32 16 26 H 0.07 1.49 6.62 -51.93 -0.34 1.14 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.48 6.62 -51.93 -0.34 1.14 16 30 H 0.04 0.70 7.68 -51.93 -0.40 0.30 16 31 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 32 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 35 H 0.06 1.12 8.13 -51.93 -0.42 0.70 16 36 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 39 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 327.90 15.07 4.94 4.94 Total: -1.00 -31.94 327.90 -7.31 -39.25 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.78 Total: 3.43 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -1.92 Total: -16.96 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.73 Total: -32.77 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.60 Total: -14.80 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.94 -7.31 -39.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802249838.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.539 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds