Wall clock time and date at job start Mon Mar 30 2020 01:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47092 * 2 1 4 4 C 1.53001 * 109.46750 * 240.00533 * 2 1 3 5 5 C 1.50696 * 109.47820 * 59.99597 * 4 2 1 6 6 H 1.08006 * 119.99391 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00544 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00128 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99639 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46813 * 90.00356 * 9 7 5 11 11 H 1.48501 * 109.46946 * 210.00010 * 9 7 5 12 12 H 1.48493 * 109.47155 * 330.00194 * 9 7 5 13 13 C 1.52994 * 109.47430 * 119.99984 * 2 1 3 14 14 O 1.42894 * 109.47208 * 300.00059 * 13 2 1 15 15 C 1.35000 * 116.99943 * 179.97438 * 14 13 2 16 16 O 1.21711 * 120.00149 * 359.97438 * 15 14 13 17 17 C 1.41261 * 119.99933 * 180.02562 * 15 14 13 18 18 C 1.35749 * 119.99663 * 188.38965 * 17 15 14 19 19 C 1.41589 * 120.00408 * 32.31606 * 18 17 15 20 20 C 1.38325 * 126.26393 * 187.22325 * 19 18 17 21 21 C 1.39765 * 107.07286 * 180.02562 * 20 19 18 22 22 C 1.35528 * 107.91463 * 359.76275 * 21 20 19 23 23 N 1.35727 * 108.91900 * 0.39196 * 22 21 20 24 24 H 0.97008 * 125.68746 * 179.86508 * 23 22 21 25 25 H 1.08998 * 109.46896 * 299.99782 * 1 2 3 26 26 H 1.08997 * 109.47566 * 59.99591 * 1 2 3 27 27 H 1.09001 * 109.47098 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47166 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47101 * 300.00467 * 3 2 1 30 30 H 1.08998 * 109.47073 * 60.00326 * 3 2 1 31 31 H 1.09005 * 109.46962 * 179.97438 * 4 2 1 32 32 H 1.09006 * 109.47049 * 299.99154 * 4 2 1 33 33 H 0.97002 * 120.00217 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.47213 * 179.97438 * 13 2 1 35 35 H 1.09001 * 109.47143 * 59.99827 * 13 2 1 36 36 H 1.07998 * 119.99961 * 8.38799 * 17 15 14 37 37 H 1.08002 * 119.99581 * 212.31403 * 18 17 15 38 38 H 1.08000 * 126.46863 * 0.02800 * 20 19 18 39 39 H 1.07997 * 126.04038 * 180.02562 * 21 20 19 40 40 H 1.07997 * 125.54314 * 180.23857 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9169 0.8675 -2.3806 7 6 1.8710 -0.4815 -3.7321 8 7 1.4330 0.1388 -4.8058 9 14 2.9462 -1.9995 -3.9035 10 1 2.0885 -3.2109 -3.9491 11 1 3.7381 -1.9062 -5.1563 12 1 3.8665 -2.0879 -2.7415 13 6 2.0401 -0.7212 1.2492 14 8 1.5638 -0.0476 2.4159 15 6 1.9262 -0.5609 3.6108 16 8 2.6276 -1.5544 3.6589 17 6 1.4904 0.0544 4.8053 18 6 1.9887 -0.3541 6.0001 19 6 3.3201 -0.8278 6.0873 20 6 3.9131 -1.4027 7.1970 21 6 5.2272 -1.7198 6.8420 22 6 5.4116 -1.3485 5.5517 23 7 4.2620 -0.8001 5.0829 24 1 4.1253 -0.4507 4.1883 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7208 -1.2496 32 1 1.6767 -1.7489 -1.2493 33 1 1.6672 -0.1926 -5.6868 34 1 3.1301 -0.7216 1.2489 35 1 1.6767 -1.7489 1.2492 36 1 0.7608 0.8498 4.7680 37 1 1.3695 -0.3176 6.8843 38 1 3.4483 -1.5741 8.1566 39 1 5.9639 -2.1831 7.4815 40 1 6.3256 -1.4672 4.9888 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802249838.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:22 Heat of formation + Delta-G solvation = -35.322548 kcal Electronic energy + Delta-G solvation = -21334.816237 eV Core-core repulsion = 18115.666195 eV Total energy + Delta-G solvation = -3219.150042 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.42120 -41.26147 -38.91401 -36.98094 -34.86214 -34.42227 -31.90926 -30.18250 -29.53332 -28.03086 -27.92381 -25.46848 -24.14683 -22.09625 -21.31683 -20.78965 -19.89977 -19.16724 -18.93156 -18.20413 -17.39068 -16.47178 -16.22677 -15.64030 -15.37845 -15.15672 -15.11129 -14.83786 -14.47342 -14.31454 -14.16618 -13.90495 -13.58531 -13.19705 -13.06834 -12.94773 -12.87633 -12.72985 -12.32947 -12.16702 -11.86653 -11.78955 -11.62613 -11.35164 -11.24657 -10.97681 -10.83671 -10.74579 -9.84138 -8.58812 -8.25782 -6.27059 -0.64656 1.33429 1.35224 1.45288 1.45427 1.86361 1.95669 2.34071 2.35641 2.47511 3.08832 3.84580 3.88921 4.01484 4.04870 4.13774 4.27145 4.37389 4.44875 4.52405 4.54019 4.63405 4.64358 4.91362 4.94761 4.98751 5.06064 5.07359 5.22557 5.31880 5.32853 5.33727 5.37494 5.50098 5.52938 5.59309 5.72056 5.98153 6.13955 6.33878 6.53532 6.78360 6.82526 7.35447 8.90002 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028434 B = 0.003738 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.482956 B = 7489.708074 C = 8127.045981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.049 4.049 3 C -0.120 4.120 4 C -0.001 4.001 5 C -0.506 4.506 6 H 0.050 0.950 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.936 3.064 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.252 1.252 13 C 0.088 3.912 14 O -0.345 6.345 15 C 0.484 3.516 16 O -0.557 6.557 17 C -0.300 4.300 18 C 0.088 3.912 19 C -0.043 4.043 20 C -0.128 4.128 21 C -0.230 4.230 22 C 0.020 3.980 23 N -0.529 5.529 24 H 0.412 0.588 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.018 0.982 32 H 0.014 0.986 33 H 0.264 0.736 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.168 0.832 37 H 0.197 0.803 38 H 0.171 0.829 39 H 0.160 0.840 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.683 -1.337 26.526 26.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.049 4.049 3 C -0.177 4.177 4 C -0.039 4.039 5 C -0.544 4.544 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.591 5.591 9 Si 0.761 3.239 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.175 1.175 13 C 0.013 3.987 14 O -0.261 6.261 15 C 0.338 3.662 16 O -0.453 6.453 17 C -0.319 4.319 18 C 0.069 3.931 19 C -0.153 4.153 20 C -0.154 4.154 21 C -0.253 4.253 22 C -0.118 4.118 23 N -0.124 5.124 24 H 0.253 0.747 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.185 0.815 37 H 0.214 0.786 38 H 0.189 0.811 39 H 0.177 0.823 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 4.821 -1.529 26.131 26.616 hybrid contribution 0.393 -0.643 -1.621 1.788 sum 5.215 -2.173 24.510 25.153 Atomic orbital electron populations 1.21642 0.94020 1.01008 1.01140 1.20456 0.96768 0.96343 0.91341 1.21637 1.00004 0.94935 1.01146 1.19557 0.96073 0.95463 0.92786 1.21307 1.30596 1.12432 0.90055 0.93147 1.25839 0.97399 0.99997 0.95717 1.70037 1.47970 1.42624 0.98492 0.85867 0.79807 0.80176 0.78056 1.19594 1.21132 1.17538 1.22646 0.98361 0.95455 0.82219 1.86239 1.70260 1.54851 1.14769 1.20650 0.76917 0.83382 0.85294 1.90888 1.38304 1.27630 1.88518 1.21287 1.13039 1.08749 0.88860 1.21491 0.89566 0.83149 0.98850 1.18841 0.92179 1.14106 0.90127 1.22003 0.95016 0.99915 0.98448 1.21244 0.98555 1.09661 0.95891 1.22734 0.91761 1.00349 0.96978 1.42845 1.10713 1.45580 1.13240 0.74733 0.91748 0.93566 0.93734 0.93493 0.93612 0.91740 0.96380 0.96742 0.92696 0.92102 0.92560 0.81462 0.78603 0.81110 0.82256 0.79802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.58 8.07 71.98 0.58 -4.00 16 2 C -0.05 -1.90 0.61 -52.18 -0.03 -1.93 16 3 C -0.12 -4.47 8.07 71.98 0.58 -3.89 16 4 C 0.00 -0.06 3.11 29.85 0.09 0.03 16 5 C -0.51 -28.17 8.20 25.60 0.21 -27.96 16 6 H 0.05 3.05 5.92 -2.91 -0.02 3.03 16 7 C 0.01 0.40 5.47 84.65 0.46 0.87 16 8 N -0.95 -59.12 13.96 21.44 0.30 -58.82 16 9 Si 0.94 44.52 27.47 68.60 1.88 46.41 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.25 -11.23 6.54 99.48 0.65 -10.58 16 13 C 0.09 3.01 4.24 71.98 0.31 3.31 16 14 O -0.34 -10.61 8.76 -59.19 -0.52 -11.13 16 15 C 0.48 13.53 6.44 68.56 0.44 13.97 16 16 O -0.56 -17.96 12.51 19.15 0.24 -17.72 16 17 C -0.30 -5.95 9.86 22.44 0.22 -5.73 16 18 C 0.09 1.38 9.76 22.52 0.22 1.60 16 19 C -0.04 -0.86 5.94 39.07 0.23 -0.63 16 20 C -0.13 -2.14 10.86 22.66 0.25 -1.90 16 21 C -0.23 -3.93 10.81 22.01 0.24 -3.69 16 22 C 0.02 0.39 11.90 83.46 0.99 1.38 16 23 N -0.53 -12.00 4.51 -187.35 -0.85 -12.85 16 24 H 0.41 10.17 6.15 -92.70 -0.57 9.60 16 25 H 0.06 2.12 7.68 -2.39 -0.02 2.10 16 26 H 0.05 1.96 6.62 -2.39 -0.02 1.95 16 27 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.04 1.92 6.62 -2.38 -0.02 1.91 16 30 H 0.06 2.08 7.68 -2.39 -0.02 2.07 16 31 H 0.02 0.83 7.20 -2.38 -0.02 0.81 16 32 H 0.01 0.66 7.57 -2.38 -0.02 0.64 16 33 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 34 H 0.06 2.04 8.13 -2.38 -0.02 2.02 16 35 H 0.06 1.98 8.13 -2.39 -0.02 1.97 16 36 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.20 1.23 8.06 -2.91 -0.02 1.21 16 38 H 0.17 1.73 8.06 -2.91 -0.02 1.70 16 39 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 40 H 0.18 2.54 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -70.03 327.90 6.26 -63.77 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.41 Total: 18.90 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 4.79 Total: -28.56 kcal Atomic # 7 Polarization: -71.13 SS G_CDS: -0.55 Total: -71.67 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.28 Total: -28.85 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.41 kcal Total: -70.03 6.26 -63.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802249838.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.448 kcal (2) G-P(sol) polarization free energy of solvation -70.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds