Wall clock time and date at job start Mon Mar 30 2020 01:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.52996 * 109.46972 * 239.99860 * 2 1 3 5 5 C 1.50703 * 109.47130 * 60.00278 * 4 2 1 6 6 H 1.07994 * 120.00100 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99896 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99653 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46868 * 90.00364 * 9 7 5 11 11 H 1.48494 * 109.47053 * 209.99917 * 9 7 5 12 12 H 1.48498 * 109.47171 * 330.00230 * 9 7 5 13 13 C 1.52997 * 109.46817 * 120.00127 * 2 1 3 14 14 O 1.42905 * 109.47264 * 299.99852 * 13 2 1 15 15 C 1.34997 * 117.00062 * 180.02562 * 14 13 2 16 16 O 1.21716 * 120.00334 * 359.97438 * 15 14 13 17 17 C 1.41253 * 119.99834 * 179.97438 * 15 14 13 18 18 C 1.35746 * 120.00197 * 179.97438 * 17 15 14 19 19 C 1.41594 * 120.00222 * 180.02562 * 18 17 15 20 20 C 1.38331 * 126.26050 * 179.68872 * 19 18 17 21 21 C 1.39757 * 107.06949 * 179.84640 * 20 19 18 22 22 C 1.35529 * 107.91436 * 0.42064 * 21 20 19 23 23 N 1.35720 * 108.92339 * 359.73688 * 22 21 20 24 24 H 0.96998 * 125.69750 * 179.97438 * 23 22 21 25 25 H 1.09002 * 109.47070 * 300.00053 * 1 2 3 26 26 H 1.09000 * 109.46986 * 59.99882 * 1 2 3 27 27 H 1.08996 * 109.47407 * 179.97438 * 1 2 3 28 28 H 1.08988 * 109.47529 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47140 * 300.00024 * 3 2 1 30 30 H 1.09002 * 109.46777 * 59.99451 * 3 2 1 31 31 H 1.09001 * 109.46997 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.47298 * 300.00176 * 4 2 1 33 33 H 0.97007 * 119.99539 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47289 * 179.97438 * 13 2 1 35 35 H 1.09004 * 109.47261 * 59.99941 * 13 2 1 36 36 H 1.07999 * 119.99926 * 0.02562 * 17 15 14 37 37 H 1.08008 * 119.99541 * 359.97438 * 18 17 15 38 38 H 1.08004 * 126.46839 * 359.96531 * 20 19 18 39 39 H 1.07994 * 126.03921 * 180.13648 * 21 20 19 40 40 H 1.08006 * 125.53478 * 179.71740 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 2.6272 -1.5510 -3.8525 9 14 1.2480 0.3985 -5.2572 10 1 2.2256 1.4409 -5.6613 11 1 1.0838 -0.5807 -6.3614 12 1 -0.0606 1.0351 -4.9614 13 6 2.0399 -0.7213 1.2492 14 8 1.5636 -0.0476 2.4161 15 6 1.9267 -0.5603 3.6109 16 8 2.6288 -1.5534 3.6591 17 6 1.4918 0.0557 4.8053 18 6 1.8565 -0.4601 6.0069 19 6 1.4201 0.1571 7.2042 20 6 1.7074 -0.2599 8.4914 21 6 1.0814 0.6361 9.3623 22 6 0.4292 1.5585 8.6134 23 7 0.6270 1.2788 7.3002 24 1 0.2691 1.7844 6.5537 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7217 -1.2490 32 1 1.6766 -1.7490 -1.2492 33 1 2.8616 -1.8824 -4.7336 34 1 3.1299 -0.7217 1.2491 35 1 1.6766 -1.7490 1.2492 36 1 0.8685 0.9366 4.7626 37 1 2.4788 -1.3418 6.0495 38 1 2.3047 -1.1153 8.7709 39 1 1.1083 0.5974 10.4412 40 1 -0.1534 2.3820 8.9992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802249839.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:25 Heat of formation + Delta-G solvation = -45.300287 kcal Electronic energy + Delta-G solvation = -20520.741780 eV Core-core repulsion = 17301.159071 eV Total energy + Delta-G solvation = -3219.582709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.49465 -40.25992 -37.36247 -35.40028 -34.13004 -32.31585 -31.46751 -29.20135 -27.25672 -26.43025 -26.39311 -24.34054 -22.77780 -21.32987 -20.68944 -19.78984 -18.32338 -18.05286 -17.07206 -16.33448 -16.09736 -15.87993 -14.69501 -14.57427 -14.35281 -14.12069 -13.67046 -13.66434 -13.11744 -12.76344 -12.68792 -12.40515 -12.38842 -12.09476 -12.04255 -11.26040 -10.96239 -10.82595 -10.63463 -10.58175 -10.51004 -10.27875 -10.19039 -10.15905 -9.68705 -9.37204 -9.19546 -8.92420 -8.35525 -8.04881 -5.99658 -4.00671 0.29872 2.12783 2.61929 2.82568 3.18175 3.26912 3.31891 3.38607 3.41268 4.45746 4.64815 4.74201 4.80100 4.94447 5.07285 5.26330 5.35961 5.53272 5.56416 5.56854 5.73641 5.85993 5.91173 5.98170 6.14395 6.22991 6.40810 6.49447 6.52651 6.60845 6.67795 6.72497 6.88811 7.06488 7.12643 7.13661 7.16342 7.63210 7.75260 7.98704 8.05333 8.41435 9.03705 9.62174 11.12010 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.049578 B = 0.002714 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.629955 B =10315.488540 C =10683.753610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.058 4.058 3 C -0.125 4.125 4 C 0.034 3.966 5 C -0.509 4.509 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.077 3.923 14 O -0.344 6.344 15 C 0.495 3.505 16 O -0.522 6.522 17 C -0.225 4.225 18 C 0.035 3.965 19 C 0.000 4.000 20 C -0.137 4.137 21 C -0.210 4.210 22 C 0.019 3.981 23 N -0.542 5.542 24 H 0.419 0.581 25 H 0.038 0.962 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.260 0.740 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.126 0.874 37 H 0.153 0.847 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.428 6.244 24.212 25.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.058 4.058 3 C -0.183 4.183 4 C -0.003 4.003 5 C -0.547 4.547 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.004 3.996 14 O -0.260 6.260 15 C 0.344 3.656 16 O -0.415 6.415 17 C -0.245 4.245 18 C 0.016 3.984 19 C -0.110 4.110 20 C -0.162 4.162 21 C -0.234 4.234 22 C -0.117 4.117 23 N -0.137 5.137 24 H 0.258 0.742 25 H 0.057 0.943 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.144 0.856 37 H 0.170 0.830 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.206 5.919 23.897 24.975 hybrid contribution -0.373 0.547 -1.326 1.482 sum -4.579 6.466 22.570 23.920 Atomic orbital electron populations 1.21709 0.94929 1.00909 1.00710 1.20798 0.96044 0.96121 0.92827 1.21707 1.00031 0.95808 1.00707 1.19131 0.96387 0.95308 0.89470 1.21156 1.31175 1.12067 0.90321 0.92114 1.25023 0.95338 0.95100 0.99120 1.69969 1.37021 1.23025 1.23459 0.86614 0.79215 0.79380 0.82911 1.20743 1.21326 1.19895 1.23066 0.98895 0.96046 0.81632 1.86199 1.69446 1.55645 1.14738 1.19687 0.78258 0.82526 0.85171 1.90887 1.36290 1.25753 1.88549 1.21051 1.08371 1.04416 0.90642 1.20902 0.92257 0.96372 0.88915 1.18224 1.04483 0.93372 0.94910 1.21583 1.02896 1.01091 0.90634 1.20917 1.04708 0.98127 0.99641 1.22124 1.04580 1.02447 0.82517 1.42242 1.39816 1.23389 1.08229 0.74248 0.94321 0.91605 0.93771 0.93772 0.91609 0.94323 0.96344 0.96334 0.93029 0.91933 0.91935 0.85614 0.82981 0.83609 0.84057 0.81304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.08 37.16 0.30 -2.13 16 2 C -0.06 -1.20 0.61 -154.51 -0.09 -1.29 16 3 C -0.13 -2.43 8.08 37.16 0.30 -2.13 16 4 C 0.03 0.87 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.85 7.65 -34.44 -0.26 -14.12 16 6 H 0.06 1.59 5.68 -52.49 -0.30 1.30 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 9 Si 0.89 21.47 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.08 1.49 4.24 37.16 0.16 1.65 16 14 O -0.34 -5.95 8.76 -41.31 -0.36 -6.31 16 15 C 0.50 7.90 7.68 31.88 0.24 8.15 16 16 O -0.52 -9.68 15.88 -19.43 -0.31 -9.99 16 17 C -0.22 -2.62 9.53 -39.33 -0.37 -3.00 16 18 C 0.03 0.36 9.40 -39.19 -0.37 -0.01 16 19 C 0.00 0.00 6.74 -83.91 -0.57 -0.57 16 20 C -0.14 -1.13 10.86 -38.98 -0.42 -1.56 16 21 C -0.21 -1.49 10.81 -39.98 -0.43 -1.93 16 22 C 0.02 0.12 11.90 -16.80 -0.20 -0.08 16 23 N -0.54 -3.82 5.94 -10.57 -0.06 -3.88 16 24 H 0.42 2.12 7.87 -40.82 -0.32 1.79 16 25 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 26 H 0.06 1.33 6.62 -51.93 -0.34 0.99 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.04 0.85 8.14 -51.94 -0.42 0.42 16 29 H 0.06 1.33 6.62 -51.93 -0.34 0.98 16 30 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 35 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 36 H 0.13 1.17 6.93 -52.49 -0.36 0.80 16 37 H 0.15 1.56 7.46 -52.48 -0.39 1.17 16 38 H 0.15 0.98 8.06 -52.48 -0.42 0.55 16 39 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.17 0.50 8.06 -52.48 -0.42 0.07 16 LS Contribution 337.65 15.07 5.09 5.09 Total: -1.00 -32.51 337.65 -7.66 -40.17 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -5.80 Total: -0.71 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -1.93 Total: -14.79 kcal Atomic # 7 Polarization: -30.57 SS G_CDS: 0.67 Total: -29.89 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.67 Total: -16.30 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.51 -7.66 -40.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802249839.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.133 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds