Wall clock time and date at job start Mon Mar 30 2020 01:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.52996 * 109.46972 * 239.99860 * 2 1 3 5 5 C 1.50703 * 109.47130 * 60.00278 * 4 2 1 6 6 H 1.07994 * 120.00100 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99896 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99653 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46868 * 90.00364 * 9 7 5 11 11 H 1.48494 * 109.47053 * 209.99917 * 9 7 5 12 12 H 1.48498 * 109.47171 * 330.00230 * 9 7 5 13 13 C 1.52997 * 109.46817 * 120.00127 * 2 1 3 14 14 O 1.42905 * 109.47264 * 299.99852 * 13 2 1 15 15 C 1.34997 * 117.00062 * 180.02562 * 14 13 2 16 16 O 1.21716 * 120.00334 * 359.97438 * 15 14 13 17 17 C 1.41253 * 119.99834 * 179.97438 * 15 14 13 18 18 C 1.35746 * 120.00197 * 179.97438 * 17 15 14 19 19 C 1.41594 * 120.00222 * 180.02562 * 18 17 15 20 20 C 1.38331 * 126.26050 * 179.68872 * 19 18 17 21 21 C 1.39757 * 107.06949 * 179.84640 * 20 19 18 22 22 C 1.35529 * 107.91436 * 0.42064 * 21 20 19 23 23 N 1.35720 * 108.92339 * 359.73688 * 22 21 20 24 24 H 0.96998 * 125.69750 * 179.97438 * 23 22 21 25 25 H 1.09002 * 109.47070 * 300.00053 * 1 2 3 26 26 H 1.09000 * 109.46986 * 59.99882 * 1 2 3 27 27 H 1.08996 * 109.47407 * 179.97438 * 1 2 3 28 28 H 1.08988 * 109.47529 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47140 * 300.00024 * 3 2 1 30 30 H 1.09002 * 109.46777 * 59.99451 * 3 2 1 31 31 H 1.09001 * 109.46997 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.47298 * 300.00176 * 4 2 1 33 33 H 0.97007 * 119.99539 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47289 * 179.97438 * 13 2 1 35 35 H 1.09004 * 109.47261 * 59.99941 * 13 2 1 36 36 H 1.07999 * 119.99926 * 0.02562 * 17 15 14 37 37 H 1.08008 * 119.99541 * 359.97438 * 18 17 15 38 38 H 1.08004 * 126.46839 * 359.96531 * 20 19 18 39 39 H 1.07994 * 126.03921 * 180.13648 * 21 20 19 40 40 H 1.08006 * 125.53478 * 179.71740 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 2.6272 -1.5510 -3.8525 9 14 1.2480 0.3985 -5.2572 10 1 2.2256 1.4409 -5.6613 11 1 1.0838 -0.5807 -6.3614 12 1 -0.0606 1.0351 -4.9614 13 6 2.0399 -0.7213 1.2492 14 8 1.5636 -0.0476 2.4161 15 6 1.9267 -0.5603 3.6109 16 8 2.6288 -1.5534 3.6591 17 6 1.4918 0.0557 4.8053 18 6 1.8565 -0.4601 6.0069 19 6 1.4201 0.1571 7.2042 20 6 1.7074 -0.2599 8.4914 21 6 1.0814 0.6361 9.3623 22 6 0.4292 1.5585 8.6134 23 7 0.6270 1.2788 7.3002 24 1 0.2691 1.7844 6.5537 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7217 -1.2490 32 1 1.6766 -1.7490 -1.2492 33 1 2.8616 -1.8824 -4.7336 34 1 3.1299 -0.7217 1.2491 35 1 1.6766 -1.7490 1.2492 36 1 0.8685 0.9366 4.7626 37 1 2.4788 -1.3418 6.0495 38 1 2.3047 -1.1153 8.7709 39 1 1.1083 0.5974 10.4412 40 1 -0.1534 2.3820 8.9992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802249839.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:25 Heat of formation + Delta-G solvation = -63.295235 kcal Electronic energy + Delta-G solvation = -20521.522100 eV Core-core repulsion = 17301.159071 eV Total energy + Delta-G solvation = -3220.363029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.10910 -41.53785 -38.88953 -36.94869 -35.01467 -34.40362 -32.03279 -30.10482 -29.16141 -27.97875 -27.87851 -25.61427 -24.46891 -22.11952 -21.31899 -20.73100 -19.91719 -19.06341 -18.37229 -17.98462 -17.49206 -17.21243 -16.50989 -15.38429 -15.32933 -15.16076 -15.06389 -14.68618 -14.63234 -14.11170 -14.05081 -13.87566 -13.31822 -13.23741 -12.98761 -12.98340 -12.75070 -12.67950 -12.33844 -12.24873 -11.98051 -11.81783 -11.69150 -11.45701 -11.32104 -11.04830 -10.90139 -10.53326 -9.92710 -8.70720 -8.16087 -6.24190 -0.55832 1.38582 1.42121 1.43049 1.53701 1.90410 1.92062 2.32077 2.35215 2.44112 3.18205 3.80731 3.93153 3.95152 3.97272 4.21139 4.27673 4.33029 4.41084 4.47643 4.54109 4.58706 4.73560 4.87771 4.99897 5.02876 5.11199 5.12160 5.30676 5.32345 5.41194 5.43765 5.46576 5.53309 5.55054 5.73425 5.86416 5.89754 6.03083 6.27289 6.59249 6.78298 6.89646 7.43325 8.96692 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.049578 B = 0.002714 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.629955 B =10315.488540 C =10683.753610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.054 4.054 3 C -0.119 4.119 4 C 0.039 3.961 5 C -0.515 4.515 6 H 0.072 0.928 7 C -0.005 4.005 8 N -0.938 5.938 9 Si 0.962 3.038 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.260 1.260 13 C 0.089 3.911 14 O -0.342 6.342 15 C 0.494 3.506 16 O -0.562 6.562 17 C -0.256 4.256 18 C 0.068 3.932 19 C -0.036 4.036 20 C -0.135 4.135 21 C -0.230 4.230 22 C 0.042 3.958 23 N -0.539 5.539 24 H 0.429 0.571 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.057 0.943 30 H 0.066 0.934 31 H -0.011 1.011 32 H -0.011 1.011 33 H 0.261 0.739 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.155 0.845 39 H 0.160 0.840 40 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.165 8.698 26.334 28.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.055 4.055 3 C -0.176 4.176 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.090 0.910 7 C -0.202 4.202 8 N -0.579 5.579 9 Si 0.787 3.213 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.184 1.184 13 C 0.014 3.986 14 O -0.258 6.258 15 C 0.345 3.655 16 O -0.457 6.457 17 C -0.276 4.276 18 C 0.049 3.951 19 C -0.145 4.145 20 C -0.161 4.161 21 C -0.253 4.253 22 C -0.095 4.095 23 N -0.134 5.134 24 H 0.269 0.731 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.007 0.993 32 H 0.007 0.993 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.169 0.831 37 H 0.163 0.837 38 H 0.173 0.827 39 H 0.178 0.822 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.958 8.395 26.022 27.984 hybrid contribution 0.169 -0.219 -1.659 1.682 sum -5.788 8.177 24.363 26.342 Atomic orbital electron populations 1.21635 0.93496 1.00830 1.01591 1.20625 0.97116 0.96524 0.91190 1.21634 0.99648 0.94671 1.01614 1.18997 0.94458 0.94332 0.92024 1.21530 1.30673 1.12154 0.90891 0.90961 1.25977 0.95602 0.95874 1.02776 1.70123 1.38672 1.24881 1.24221 0.85482 0.79182 0.78106 0.78501 1.20016 1.21362 1.18374 1.22662 0.98041 0.95421 0.82445 1.86172 1.69581 1.55415 1.14644 1.20385 0.77488 0.82120 0.85466 1.90868 1.38476 1.27653 1.88713 1.20927 1.11430 1.06364 0.88864 1.20940 0.89859 0.95119 0.89178 1.18136 1.06838 0.95097 0.94450 1.21959 1.02051 1.01264 0.90780 1.21287 1.05063 0.98245 1.00753 1.22828 1.02621 1.02205 0.81850 1.42337 1.39152 1.22767 1.09139 0.73103 0.91549 0.92420 0.94401 0.94406 0.92375 0.91555 0.99304 0.99289 0.93054 0.93134 0.93135 0.83147 0.83688 0.82747 0.82241 0.77660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 8.08 71.98 0.58 -3.93 16 2 C -0.05 -2.28 0.61 -52.18 -0.03 -2.31 16 3 C -0.12 -4.51 8.08 71.98 0.58 -3.93 16 4 C 0.04 2.07 4.04 29.85 0.12 2.19 16 5 C -0.51 -28.39 7.65 25.60 0.20 -28.19 16 6 H 0.07 3.75 5.68 -2.91 -0.02 3.74 16 7 C -0.01 -0.31 5.46 84.66 0.46 0.16 16 8 N -0.94 -57.69 13.29 21.45 0.28 -57.41 16 9 Si 0.96 44.19 29.54 68.60 2.03 46.21 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 13 C 0.09 3.54 4.24 71.98 0.31 3.85 16 14 O -0.34 -11.76 8.76 -59.15 -0.52 -12.28 16 15 C 0.49 15.92 7.68 68.56 0.53 16.45 16 16 O -0.56 -21.64 15.88 19.13 0.30 -21.33 16 17 C -0.26 -5.77 9.53 22.43 0.21 -5.56 16 18 C 0.07 1.35 9.40 22.52 0.21 1.56 16 19 C -0.04 -0.58 6.74 39.07 0.26 -0.32 16 20 C -0.13 -1.94 10.86 22.66 0.25 -1.69 16 21 C -0.23 -2.51 10.81 22.01 0.24 -2.27 16 22 C 0.04 0.35 11.90 83.46 0.99 1.34 16 23 N -0.54 -5.91 5.94 -187.34 -1.11 -7.03 16 24 H 0.43 2.95 7.87 -92.71 -0.73 2.22 16 25 H 0.07 2.15 7.68 -2.39 -0.02 2.13 16 26 H 0.06 2.27 6.62 -2.39 -0.02 2.26 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 2.28 6.62 -2.39 -0.02 2.27 16 30 H 0.07 2.15 7.68 -2.39 -0.02 2.13 16 31 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H -0.01 -0.66 8.14 -2.38 -0.02 -0.67 16 33 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 34 H 0.05 2.10 8.13 -2.39 -0.02 2.08 16 35 H 0.05 2.10 8.13 -2.38 -0.02 2.08 16 36 H 0.15 2.50 6.93 -2.91 -0.02 2.48 16 37 H 0.15 3.00 7.46 -2.91 -0.02 2.97 16 38 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 39 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 40 H 0.21 0.10 8.06 -2.91 -0.02 0.08 16 Total: -1.00 -71.98 337.65 6.20 -65.78 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.31 Total: 8.71 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 4.91 Total: -22.66 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: -0.83 Total: -64.43 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -0.21 Total: -33.61 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -71.98 6.20 -65.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802249839.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.487 kcal (2) G-P(sol) polarization free energy of solvation -71.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds