Wall clock time and date at job start Mon Mar 30 2020 01:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47138 * 2 1 4 4 C 1.53000 * 109.46913 * 240.00583 * 2 1 3 5 5 C 1.50694 * 109.47300 * 60.00124 * 4 2 1 6 6 H 1.07998 * 120.00383 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99629 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00256 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99618 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47346 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47178 * 120.00055 * 9 7 5 12 12 H 1.48502 * 109.47139 * 239.99780 * 9 7 5 13 13 C 1.52995 * 109.47299 * 120.00254 * 2 1 3 14 14 N 1.46502 * 109.47041 * 300.00228 * 13 2 1 15 15 C 1.34776 * 119.99814 * 180.02562 * 14 13 2 16 16 O 1.21773 * 120.00237 * 359.97438 * 15 14 13 17 17 C 1.41557 * 119.99762 * 180.27633 * 15 14 13 18 18 C 1.35626 * 119.99616 * 186.06298 * 17 15 14 19 19 C 1.41600 * 120.00628 * 8.85373 * 18 17 15 20 20 C 1.37955 * 126.10479 * 219.80683 * 19 18 17 21 21 C 1.40316 * 106.52697 * 179.84863 * 20 19 18 22 22 C 1.35159 * 107.20837 * 0.40349 * 21 20 19 23 23 O 1.34026 * 109.03199 * 359.74473 * 22 21 20 24 24 H 1.09001 * 109.47234 * 299.99932 * 1 2 3 25 25 H 1.08998 * 109.46923 * 59.99344 * 1 2 3 26 26 H 1.08997 * 109.47314 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47155 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47749 * 300.00150 * 3 2 1 29 29 H 1.08997 * 109.46884 * 60.00399 * 3 2 1 30 30 H 1.09006 * 109.46830 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.47191 * 299.99555 * 4 2 1 32 32 H 0.96998 * 120.00150 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47494 * 180.02562 * 13 2 1 34 34 H 1.09002 * 109.47125 * 59.99481 * 13 2 1 35 35 H 0.96997 * 120.00012 * 359.97438 * 14 13 2 36 36 H 1.08002 * 120.00189 * 6.05624 * 17 15 14 37 37 H 1.08012 * 119.99485 * 188.85202 * 18 17 15 38 38 H 1.07994 * 126.73651 * 359.95911 * 20 19 18 39 39 H 1.08004 * 126.39835 * 180.15015 * 21 20 19 40 40 H 1.07997 * 125.48576 * 179.72054 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.5376 -0.0106 -2.4797 6 1 0.9164 0.8672 -2.3806 7 6 1.8703 -0.4820 -3.7320 8 7 2.6264 -1.5513 -3.8527 9 14 1.2471 0.3983 -5.2571 10 1 0.4217 1.5648 -4.8529 11 1 2.4018 0.8649 -6.0660 12 1 0.4218 -0.5352 -6.0651 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8777 -0.4910 3.6694 16 8 2.5778 -1.4810 3.7811 17 6 1.4010 0.1729 4.8253 18 6 1.8270 -0.2138 6.0534 19 6 2.8835 -1.1488 6.1746 20 6 2.9590 -2.1756 7.0929 21 6 4.1677 -2.8440 6.8457 22 6 4.7727 -2.2091 5.8173 23 8 3.9987 -1.1911 5.4161 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9565 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7215 -1.2491 31 1 1.6767 -1.7488 -1.2494 32 1 2.8601 -1.8831 -4.7337 33 1 3.1300 -0.7209 1.2494 34 1 1.6766 -1.7489 1.2492 35 1 0.9943 0.7581 2.3564 36 1 0.6982 0.9873 4.7291 37 1 1.3603 0.1915 6.9392 38 1 2.2300 -2.4185 7.8517 39 1 4.5462 -3.7027 7.3804 40 1 5.7264 -2.4785 5.3881 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805279786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:17 Heat of formation + Delta-G solvation = -12.348005 kcal Electronic energy + Delta-G solvation = -21250.933834 eV Core-core repulsion = 18032.780042 eV Total energy + Delta-G solvation = -3218.153791 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.33742 -39.67428 -37.19222 -34.10054 -33.53688 -32.76889 -32.07687 -28.96464 -27.12273 -26.50067 -26.33809 -23.94849 -22.51073 -21.60225 -20.88056 -19.55848 -18.33444 -17.53961 -16.49946 -16.31665 -15.78569 -15.44209 -14.95903 -14.55112 -14.28667 -13.99328 -13.53908 -13.19406 -13.02884 -12.80641 -12.70605 -12.50365 -12.30077 -12.09538 -12.05931 -11.15155 -11.02155 -10.83299 -10.64019 -10.39294 -10.23465 -10.14485 -9.88304 -9.85446 -9.67394 -9.16631 -8.90813 -8.63949 -8.35985 -7.94620 -5.99792 -4.00981 0.55591 2.16902 2.70834 3.24572 3.30077 3.38120 3.40455 3.57745 3.65649 4.45432 4.69567 4.91055 5.03515 5.08655 5.26910 5.35805 5.50186 5.65030 5.69070 5.71805 5.77721 5.95236 5.98010 6.18839 6.22482 6.25519 6.35209 6.41829 6.55309 6.60637 6.63994 6.81259 7.07670 7.08520 7.14617 7.25468 7.64951 7.77218 7.82501 7.99278 8.40913 8.52293 9.04143 9.62149 11.11745 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036209 B = 0.003354 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.096080 B = 8347.249429 C = 8828.339071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.130 3.870 14 N -0.716 5.716 15 C 0.529 3.471 16 O -0.531 6.531 17 C -0.197 4.197 18 C -0.006 4.006 19 C 0.012 3.988 20 C -0.187 4.187 21 C -0.229 4.229 22 C -0.016 4.016 23 O -0.131 6.131 24 H 0.029 0.971 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.028 0.972 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.259 0.741 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.397 0.603 36 H 0.136 0.864 37 H 0.153 0.847 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.341 3.518 20.907 21.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.074 4.074 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.007 3.993 14 N -0.368 5.368 15 C 0.318 3.682 16 O -0.411 6.411 17 C -0.218 4.218 18 C -0.026 4.026 19 C -0.039 4.039 20 C -0.206 4.206 21 C -0.248 4.248 22 C -0.086 4.086 23 O -0.024 6.024 24 H 0.048 0.952 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.232 0.768 36 H 0.153 0.847 37 H 0.170 0.830 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -0.706 2.911 20.569 20.786 hybrid contribution -0.617 0.524 -0.955 1.252 sum -1.324 3.434 19.615 19.957 Atomic orbital electron populations 1.21756 0.95305 1.01124 1.00196 1.20906 0.95450 0.95859 0.95142 1.21754 1.00520 0.95903 1.00187 1.19089 0.96333 0.95209 0.89521 1.21226 1.31065 1.12043 0.90519 0.92201 1.25021 0.95333 0.95087 0.99102 1.69975 1.37039 1.23066 1.23317 0.86595 0.78606 0.79679 0.83452 1.19797 1.21130 1.21139 1.21578 0.98823 0.95928 0.82969 1.46150 1.53021 1.31583 1.06011 1.17148 0.81438 0.85457 0.84195 1.90863 1.37377 1.26340 1.86518 1.22378 1.04081 1.02065 0.93258 1.20580 0.91659 0.92447 0.97927 1.19565 0.90261 1.00783 0.93260 1.22104 0.99155 0.97768 1.01564 1.21598 0.97169 1.04010 1.01998 1.24156 0.97621 0.89334 0.97520 1.84296 1.26300 1.43499 1.48286 0.95245 0.91463 0.93410 0.93407 0.91465 0.95251 0.96382 0.96390 0.93101 0.91912 0.91956 0.76755 0.84660 0.82953 0.83605 0.83754 0.78607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 2 C -0.07 -1.41 0.54 -154.51 -0.08 -1.49 16 3 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 4 C 0.04 0.89 4.04 -27.89 -0.11 0.78 16 5 C -0.51 -13.62 7.65 -34.44 -0.26 -13.88 16 6 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.13 2.36 4.56 -4.04 -0.02 2.35 16 14 N -0.72 -10.69 4.95 -63.24 -0.31 -11.01 16 15 C 0.53 8.18 7.36 -14.99 -0.11 8.07 16 16 O -0.53 -10.15 12.41 -19.71 -0.24 -10.40 16 17 C -0.20 -2.20 9.85 -39.25 -0.39 -2.59 16 18 C -0.01 -0.06 9.95 -39.23 -0.39 -0.45 16 19 C 0.01 0.16 5.32 -38.40 -0.20 -0.05 16 20 C -0.19 -2.22 10.90 -38.90 -0.42 -2.64 16 21 C -0.23 -2.67 10.87 -39.90 -0.43 -3.11 16 22 C -0.02 -0.20 12.06 29.64 0.36 0.16 16 23 O -0.13 -2.01 7.81 -20.18 -0.16 -2.17 16 24 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 25 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 29 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.40 4.95 6.12 -40.82 -0.25 4.70 16 36 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 38 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 40 H 0.20 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 330.18 15.07 4.98 4.98 Total: -1.00 -33.10 330.18 -7.33 -40.43 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.73 Total: 3.05 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -1.57 Total: -15.29 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.42 Total: -36.83 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.40 Total: -12.57 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.10 -7.33 -40.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805279786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.080 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds