Wall clock time and date at job start Mon Mar 30 2020 01:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47138 * 2 1 4 4 C 1.53000 * 109.46913 * 240.00583 * 2 1 3 5 5 C 1.50694 * 109.47300 * 60.00124 * 4 2 1 6 6 H 1.07998 * 120.00383 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99629 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00256 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99618 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47346 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47178 * 120.00055 * 9 7 5 12 12 H 1.48502 * 109.47139 * 239.99780 * 9 7 5 13 13 C 1.52995 * 109.47299 * 120.00254 * 2 1 3 14 14 N 1.46502 * 109.47041 * 300.00228 * 13 2 1 15 15 C 1.34776 * 119.99814 * 180.02562 * 14 13 2 16 16 O 1.21773 * 120.00237 * 359.97438 * 15 14 13 17 17 C 1.41557 * 119.99762 * 180.27633 * 15 14 13 18 18 C 1.35626 * 119.99616 * 186.06298 * 17 15 14 19 19 C 1.41600 * 120.00628 * 8.85373 * 18 17 15 20 20 C 1.37955 * 126.10479 * 219.80683 * 19 18 17 21 21 C 1.40316 * 106.52697 * 179.84863 * 20 19 18 22 22 C 1.35159 * 107.20837 * 0.40349 * 21 20 19 23 23 O 1.34026 * 109.03199 * 359.74473 * 22 21 20 24 24 H 1.09001 * 109.47234 * 299.99932 * 1 2 3 25 25 H 1.08998 * 109.46923 * 59.99344 * 1 2 3 26 26 H 1.08997 * 109.47314 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47155 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47749 * 300.00150 * 3 2 1 29 29 H 1.08997 * 109.46884 * 60.00399 * 3 2 1 30 30 H 1.09006 * 109.46830 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.47191 * 299.99555 * 4 2 1 32 32 H 0.96998 * 120.00150 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47494 * 180.02562 * 13 2 1 34 34 H 1.09002 * 109.47125 * 59.99481 * 13 2 1 35 35 H 0.96997 * 120.00012 * 359.97438 * 14 13 2 36 36 H 1.08002 * 120.00189 * 6.05624 * 17 15 14 37 37 H 1.08012 * 119.99485 * 188.85202 * 18 17 15 38 38 H 1.07994 * 126.73651 * 359.95911 * 20 19 18 39 39 H 1.08004 * 126.39835 * 180.15015 * 21 20 19 40 40 H 1.07997 * 125.48576 * 179.72054 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.5376 -0.0106 -2.4797 6 1 0.9164 0.8672 -2.3806 7 6 1.8703 -0.4820 -3.7320 8 7 2.6264 -1.5513 -3.8527 9 14 1.2471 0.3983 -5.2571 10 1 0.4217 1.5648 -4.8529 11 1 2.4018 0.8649 -6.0660 12 1 0.4218 -0.5352 -6.0651 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8777 -0.4910 3.6694 16 8 2.5778 -1.4810 3.7811 17 6 1.4010 0.1729 4.8253 18 6 1.8270 -0.2138 6.0534 19 6 2.8835 -1.1488 6.1746 20 6 2.9590 -2.1756 7.0929 21 6 4.1677 -2.8440 6.8457 22 6 4.7727 -2.2091 5.8173 23 8 3.9987 -1.1911 5.4161 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9565 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7215 -1.2491 31 1 1.6767 -1.7488 -1.2494 32 1 2.8601 -1.8831 -4.7337 33 1 3.1300 -0.7209 1.2494 34 1 1.6766 -1.7489 1.2492 35 1 0.9943 0.7581 2.3564 36 1 0.6982 0.9873 4.7291 37 1 1.3603 0.1915 6.9392 38 1 2.2300 -2.4185 7.8517 39 1 4.5462 -3.7027 7.3804 40 1 5.7264 -2.4785 5.3881 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805279786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:16 Heat of formation + Delta-G solvation = -32.496843 kcal Electronic energy + Delta-G solvation = -21251.807553 eV Core-core repulsion = 18032.780042 eV Total energy + Delta-G solvation = -3219.027510 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.27508 -40.91471 -38.72907 -35.29201 -34.92161 -33.91774 -33.69742 -30.00763 -29.02942 -27.96556 -27.70301 -25.42482 -24.03557 -22.52587 -21.97323 -20.69307 -19.67829 -18.74269 -18.38047 -17.49889 -16.85819 -16.66363 -16.42174 -16.29968 -15.41705 -15.13400 -14.97347 -14.63014 -14.42468 -14.00055 -13.94600 -13.79461 -13.66570 -13.38109 -13.11547 -12.89302 -12.70039 -12.59947 -12.35289 -12.23484 -11.95317 -11.54691 -11.18177 -11.00825 -10.90636 -10.79606 -10.65402 -10.53318 -9.97228 -8.86651 -8.14928 -6.23044 -0.32008 1.23306 1.41411 1.42198 1.54280 1.80098 2.32465 2.40679 2.49442 2.58014 3.19517 3.88080 3.96966 4.07984 4.10910 4.18553 4.22601 4.25065 4.55242 4.68892 4.72022 4.75918 4.87761 4.90230 4.96447 5.09568 5.10959 5.11858 5.18621 5.39694 5.42656 5.48839 5.49092 5.53193 5.59044 5.71818 5.79380 5.89029 6.29460 6.33647 6.69102 6.92530 7.37501 7.44947 8.97989 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036209 B = 0.003354 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.096080 B = 8347.249429 C = 8828.339071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.065 4.065 3 C -0.120 4.120 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.074 0.926 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.960 3.040 10 H -0.255 1.255 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.146 3.854 14 N -0.706 5.706 15 C 0.521 3.479 16 O -0.576 6.576 17 C -0.210 4.210 18 C 0.008 3.992 19 C -0.019 4.019 20 C -0.191 4.191 21 C -0.234 4.234 22 C -0.042 4.042 23 O -0.163 6.163 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.056 0.944 29 H 0.071 0.929 30 H -0.017 1.017 31 H -0.016 1.016 32 H 0.259 0.741 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.413 0.587 36 H 0.180 0.820 37 H 0.202 0.798 38 H 0.174 0.826 39 H 0.168 0.832 40 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.402 5.745 22.771 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.066 4.066 3 C -0.177 4.177 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.179 1.179 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.022 3.978 14 N -0.359 5.359 15 C 0.313 3.687 16 O -0.459 6.459 17 C -0.230 4.230 18 C -0.011 4.011 19 C -0.068 4.068 20 C -0.210 4.210 21 C -0.252 4.252 22 C -0.111 4.111 23 O -0.057 6.057 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.001 0.999 31 H 0.002 0.998 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.251 0.749 36 H 0.197 0.803 37 H 0.219 0.781 38 H 0.191 0.809 39 H 0.185 0.815 40 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -2.797 5.178 22.454 23.213 hybrid contribution 0.099 -0.268 -1.438 1.466 sum -2.698 4.910 21.016 21.750 Atomic orbital electron populations 1.21683 0.93429 1.00879 1.01768 1.20713 0.96821 0.96308 0.92722 1.21682 0.99737 0.94598 1.01731 1.18971 0.94121 0.94135 0.92535 1.21628 1.30345 1.12078 0.91010 0.90788 1.25981 0.95663 0.95876 1.02826 1.70135 1.38871 1.25051 1.24047 0.85466 0.78055 0.78835 0.79105 1.17894 1.21044 1.21038 1.21092 0.97319 0.95141 0.84271 1.45917 1.53242 1.31851 1.04873 1.17937 0.80504 0.85090 0.85204 1.90855 1.39376 1.28508 1.87120 1.22475 1.05707 1.03544 0.91308 1.21241 0.89940 0.90474 0.99493 1.20347 0.90761 1.02276 0.93461 1.22551 0.99560 0.97145 1.01707 1.22001 0.97174 1.04433 1.01633 1.24730 0.98599 0.89433 0.98350 1.84262 1.27440 1.44524 1.49479 0.90934 0.92497 0.94634 0.94723 0.92473 0.91016 0.99850 0.99813 0.93174 0.94279 0.94189 0.74868 0.80306 0.78117 0.80867 0.81465 0.76878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.07 8.05 71.98 0.58 -3.50 16 2 C -0.07 -2.52 0.54 -52.18 -0.03 -2.54 16 3 C -0.12 -4.10 8.05 71.98 0.58 -3.52 16 4 C 0.04 2.08 4.04 29.85 0.12 2.20 16 5 C -0.51 -27.76 7.65 25.60 0.20 -27.57 16 6 H 0.07 3.74 5.68 -2.91 -0.02 3.72 16 7 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 8 N -0.94 -57.83 13.29 21.45 0.28 -57.55 16 9 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 10 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 C 0.15 5.46 4.56 86.38 0.39 5.86 16 14 N -0.71 -20.05 4.95 -472.19 -2.34 -22.38 16 15 C 0.52 15.55 7.36 85.06 0.63 16.18 16 16 O -0.58 -22.42 12.41 19.16 0.24 -22.18 16 17 C -0.21 -4.02 9.85 22.48 0.22 -3.80 16 18 C 0.01 0.14 9.95 22.49 0.22 0.36 16 19 C -0.02 -0.47 5.32 23.03 0.12 -0.35 16 20 C -0.19 -4.21 10.90 22.71 0.25 -3.96 16 21 C -0.23 -5.27 10.87 22.07 0.24 -5.03 16 22 C -0.04 -1.07 12.06 67.11 0.81 -0.26 16 23 O -0.16 -5.07 7.81 17.48 0.14 -4.93 16 24 H 0.07 1.82 6.86 -2.39 -0.02 1.81 16 25 H 0.06 2.05 6.62 -2.39 -0.02 2.03 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 2.07 6.62 -2.39 -0.02 2.05 16 29 H 0.07 1.83 6.86 -2.39 -0.02 1.81 16 30 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 31 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 32 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.41 8.82 6.12 -92.71 -0.57 8.26 16 36 H 0.18 1.75 8.06 -2.91 -0.02 1.72 16 37 H 0.20 1.40 8.06 -2.90 -0.02 1.38 16 38 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 39 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 40 H 0.21 4.19 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -76.67 330.18 5.61 -71.05 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.47 Total: 15.97 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 4.79 Total: -25.86 kcal Atomic # 7 Polarization: -77.88 SS G_CDS: -2.05 Total: -79.93 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: 0.37 Total: -27.12 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -76.67 5.61 -71.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805279786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.558 kcal (2) G-P(sol) polarization free energy of solvation -76.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds