Wall clock time and date at job start Mon Mar 30 2020 01:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.52996 * 109.46972 * 239.99860 * 2 1 3 5 5 C 1.50703 * 109.47130 * 60.00278 * 4 2 1 6 6 H 1.07994 * 120.00100 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99896 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99699 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47182 * 90.00248 * 9 7 5 11 11 H 1.48498 * 109.47091 * 210.00192 * 9 7 5 12 12 H 1.48505 * 109.47095 * 329.99725 * 9 7 5 13 13 C 1.52997 * 109.46817 * 120.00127 * 2 1 3 14 14 N 1.46506 * 109.47289 * 299.99814 * 13 2 1 15 15 C 1.34774 * 120.00072 * 180.02562 * 14 13 2 16 16 O 1.21773 * 120.00033 * 359.97438 * 15 14 13 17 17 C 1.41545 * 119.99929 * 180.02562 * 15 14 13 18 18 C 1.35630 * 120.00463 * 180.02562 * 17 15 14 19 19 C 1.41605 * 120.00435 * 180.02562 * 18 17 15 20 20 C 1.37946 * 126.10466 * 179.97438 * 19 18 17 21 21 C 1.40305 * 106.53013 * 179.97438 * 20 19 18 22 22 C 1.35161 * 107.20495 * 359.97438 * 21 20 19 23 23 O 1.34017 * 109.03046 * 359.77076 * 22 21 20 24 24 H 1.09002 * 109.47070 * 300.00053 * 1 2 3 25 25 H 1.09000 * 109.46986 * 59.99882 * 1 2 3 26 26 H 1.08996 * 109.47407 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47140 * 300.00024 * 3 2 1 29 29 H 1.09002 * 109.46777 * 59.99451 * 3 2 1 30 30 H 1.09001 * 109.46997 * 180.02562 * 4 2 1 31 31 H 1.09004 * 109.47298 * 300.00176 * 4 2 1 32 32 H 0.97007 * 119.99539 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47289 * 179.97438 * 13 2 1 34 34 H 1.09004 * 109.47261 * 59.99941 * 13 2 1 35 35 H 0.97001 * 119.99251 * 0.02562 * 14 13 2 36 36 H 1.08004 * 120.00062 * 0.02562 * 17 15 14 37 37 H 1.08000 * 119.99338 * 359.97438 * 18 17 15 38 38 H 1.08003 * 126.73238 * 359.97438 * 20 19 18 39 39 H 1.08000 * 126.40314 * 179.97438 * 21 20 19 40 40 H 1.08002 * 125.48084 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 2.6272 -1.5510 -3.8525 9 14 1.2492 0.3993 -5.2572 10 1 2.2276 1.4409 -5.6608 11 1 1.0845 -0.5795 -6.3617 12 1 -0.0591 1.0369 -4.9616 13 6 2.0399 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4455 15 6 1.8776 -0.4909 3.6695 16 8 2.5776 -1.4810 3.7813 17 6 1.4053 0.1761 4.8252 18 6 1.7337 -0.2866 6.0572 19 6 1.2608 0.3803 7.2133 20 6 1.5155 0.0206 8.5205 21 6 0.8526 0.9567 9.3285 22 6 0.2344 1.8306 8.5032 23 8 0.4860 1.4848 7.2330 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7217 -1.2490 31 1 1.6766 -1.7490 -1.2492 32 1 2.8616 -1.8824 -4.7336 33 1 3.1299 -0.7217 1.2491 34 1 1.6766 -1.7490 1.2492 35 1 0.9937 0.7578 2.3564 36 1 0.7834 1.0535 4.7262 37 1 2.3552 -1.1643 6.1562 38 1 2.1087 -0.8172 8.8561 39 1 0.8387 0.9756 10.4082 40 1 -0.3624 2.6743 8.8169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805279787.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:20 Heat of formation + Delta-G solvation = -23.150615 kcal Electronic energy + Delta-G solvation = -20494.226376 eV Core-core repulsion = 17275.604148 eV Total energy + Delta-G solvation = -3218.622228 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.85374 -39.76219 -37.20012 -34.30759 -33.59061 -33.34812 -32.08012 -29.37292 -27.14053 -26.50212 -26.38443 -24.12920 -22.61814 -22.15614 -20.75752 -19.68856 -18.18427 -17.81795 -16.85155 -16.39432 -16.33077 -15.63122 -15.02993 -14.91641 -14.46829 -13.97371 -13.58533 -13.34063 -13.17526 -13.06433 -12.81586 -12.64778 -12.28510 -12.16903 -12.05275 -11.17192 -11.01394 -10.84926 -10.84428 -10.62868 -10.39655 -10.24827 -10.23242 -9.90213 -9.86775 -9.17160 -8.91974 -8.75039 -8.35340 -8.20398 -5.99360 -4.00566 0.24702 1.84686 2.45014 2.63285 3.31323 3.38276 3.39933 3.51784 3.56226 4.44879 4.47075 4.59147 4.66312 4.92894 5.18665 5.33883 5.36129 5.43256 5.51516 5.63956 5.72326 5.75951 5.80023 6.00462 6.15193 6.18395 6.24376 6.32499 6.40692 6.57871 6.63905 6.73824 6.78076 7.07092 7.08341 7.13727 7.64820 7.76290 7.77214 7.99460 8.39912 8.43937 9.04200 9.62438 11.12097 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.048085 B = 0.002694 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.157554 B =10389.127318 C =10774.919620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.035 3.965 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.127 3.873 14 N -0.714 5.714 15 C 0.539 3.461 16 O -0.552 6.552 17 C -0.193 4.193 18 C -0.003 4.003 19 C -0.003 4.003 20 C -0.169 4.169 21 C -0.218 4.218 22 C -0.024 4.024 23 O -0.166 6.166 24 H 0.029 0.971 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.029 0.971 30 H 0.018 0.982 31 H 0.019 0.981 32 H 0.260 0.740 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.399 0.601 36 H 0.129 0.871 37 H 0.161 0.839 38 H 0.156 0.844 39 H 0.152 0.848 40 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.890 6.903 23.660 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.004 3.996 14 N -0.365 5.365 15 C 0.329 3.671 16 O -0.434 6.434 17 C -0.214 4.214 18 C -0.023 4.023 19 C -0.052 4.052 20 C -0.189 4.189 21 C -0.237 4.237 22 C -0.093 4.093 23 O -0.061 6.061 24 H 0.048 0.952 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.235 0.765 36 H 0.146 0.854 37 H 0.178 0.822 38 H 0.174 0.826 39 H 0.170 0.830 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -4.418 6.230 23.286 24.506 hybrid contribution -0.566 0.823 -0.750 1.249 sum -4.984 7.053 22.536 24.134 Atomic orbital electron populations 1.21766 0.95281 1.01186 1.00239 1.20905 0.95472 0.95855 0.95086 1.21765 1.00560 0.95906 1.00237 1.19096 0.96373 0.95245 0.89482 1.21182 1.31168 1.12029 0.90515 0.92266 1.25021 0.95351 0.95087 0.99098 1.69968 1.36985 1.23000 1.23425 0.86643 0.79166 0.79403 0.83056 1.20785 1.21349 1.19960 1.21643 0.98981 0.96064 0.82901 1.46166 1.52590 1.31708 1.06032 1.16989 0.81310 0.84775 0.84075 1.90831 1.38636 1.26548 1.87342 1.22208 1.03711 1.02304 0.93187 1.20659 0.95652 0.97388 0.88622 1.19948 0.99860 0.89952 0.95450 1.22366 1.03268 1.01905 0.91328 1.21788 1.03145 0.97722 1.01084 1.24314 1.03031 1.01754 0.80243 1.84110 1.54413 1.37829 1.29746 0.95240 0.91420 0.93343 0.93345 0.91425 0.95241 0.96323 0.96312 0.93046 0.91694 0.91697 0.76531 0.85352 0.82175 0.82613 0.82985 0.77767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 2 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 3 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.58 7.65 -34.44 -0.26 -13.85 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.22 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.13 2.28 4.56 -4.04 -0.02 2.26 16 14 N -0.71 -10.66 4.95 -63.24 -0.31 -10.97 16 15 C 0.54 8.28 7.56 -15.00 -0.11 8.17 16 16 O -0.55 -10.46 16.11 5.12 0.08 -10.37 16 17 C -0.19 -2.32 9.41 -39.25 -0.37 -2.69 16 18 C 0.00 -0.04 9.39 -39.23 -0.37 -0.40 16 19 C 0.00 -0.03 6.84 -38.41 -0.26 -0.29 16 20 C -0.17 -1.45 10.90 -38.91 -0.42 -1.87 16 21 C -0.22 -1.56 10.87 -39.90 -0.43 -2.00 16 22 C -0.02 -0.17 12.06 29.64 0.36 0.19 16 23 O -0.17 -1.63 10.18 4.71 0.05 -1.59 16 24 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 25 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 29 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.40 5.04 6.12 -40.82 -0.25 4.79 16 36 H 0.13 1.30 7.72 -52.48 -0.41 0.89 16 37 H 0.16 1.73 7.46 -52.49 -0.39 1.34 16 38 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 40 H 0.21 0.63 8.06 -52.49 -0.42 0.20 16 LS Contribution 336.02 15.07 5.06 5.06 Total: -1.00 -32.11 336.02 -6.68 -38.79 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -5.68 Total: 2.26 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -1.59 Total: -13.65 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.42 Total: -36.72 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.13 Total: -11.96 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.11 -6.68 -38.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805279787.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.635 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds