Wall clock time and date at job start Mon Mar 30 2020 01:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.52996 * 109.46972 * 239.99860 * 2 1 3 5 5 C 1.50703 * 109.47130 * 60.00278 * 4 2 1 6 6 H 1.07994 * 120.00100 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99896 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99699 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47182 * 90.00248 * 9 7 5 11 11 H 1.48498 * 109.47091 * 210.00192 * 9 7 5 12 12 H 1.48505 * 109.47095 * 329.99725 * 9 7 5 13 13 C 1.52997 * 109.46817 * 120.00127 * 2 1 3 14 14 N 1.46506 * 109.47289 * 299.99814 * 13 2 1 15 15 C 1.34774 * 120.00072 * 180.02562 * 14 13 2 16 16 O 1.21773 * 120.00033 * 359.97438 * 15 14 13 17 17 C 1.41545 * 119.99929 * 180.02562 * 15 14 13 18 18 C 1.35630 * 120.00463 * 180.02562 * 17 15 14 19 19 C 1.41605 * 120.00435 * 180.02562 * 18 17 15 20 20 C 1.37946 * 126.10466 * 179.97438 * 19 18 17 21 21 C 1.40305 * 106.53013 * 179.97438 * 20 19 18 22 22 C 1.35161 * 107.20495 * 359.97438 * 21 20 19 23 23 O 1.34017 * 109.03046 * 359.77076 * 22 21 20 24 24 H 1.09002 * 109.47070 * 300.00053 * 1 2 3 25 25 H 1.09000 * 109.46986 * 59.99882 * 1 2 3 26 26 H 1.08996 * 109.47407 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47140 * 300.00024 * 3 2 1 29 29 H 1.09002 * 109.46777 * 59.99451 * 3 2 1 30 30 H 1.09001 * 109.46997 * 180.02562 * 4 2 1 31 31 H 1.09004 * 109.47298 * 300.00176 * 4 2 1 32 32 H 0.97007 * 119.99539 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47289 * 179.97438 * 13 2 1 34 34 H 1.09004 * 109.47261 * 59.99941 * 13 2 1 35 35 H 0.97001 * 119.99251 * 0.02562 * 14 13 2 36 36 H 1.08004 * 120.00062 * 0.02562 * 17 15 14 37 37 H 1.08000 * 119.99338 * 359.97438 * 18 17 15 38 38 H 1.08003 * 126.73238 * 359.97438 * 20 19 18 39 39 H 1.08000 * 126.40314 * 179.97438 * 21 20 19 40 40 H 1.08002 * 125.48084 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 2.6272 -1.5510 -3.8525 9 14 1.2492 0.3993 -5.2572 10 1 2.2276 1.4409 -5.6608 11 1 1.0845 -0.5795 -6.3617 12 1 -0.0591 1.0369 -4.9616 13 6 2.0399 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4455 15 6 1.8776 -0.4909 3.6695 16 8 2.5776 -1.4810 3.7813 17 6 1.4053 0.1761 4.8252 18 6 1.7337 -0.2866 6.0572 19 6 1.2608 0.3803 7.2133 20 6 1.5155 0.0206 8.5205 21 6 0.8526 0.9567 9.3285 22 6 0.2344 1.8306 8.5032 23 8 0.4860 1.4848 7.2330 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7217 -1.2490 31 1 1.6766 -1.7490 -1.2492 32 1 2.8616 -1.8824 -4.7336 33 1 3.1299 -0.7217 1.2491 34 1 1.6766 -1.7490 1.2492 35 1 0.9937 0.7578 2.3564 36 1 0.7834 1.0535 4.7262 37 1 2.3552 -1.1643 6.1562 38 1 2.1087 -0.8172 8.8561 39 1 0.8387 0.9756 10.4082 40 1 -0.3624 2.6743 8.8169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805279787.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:19 Heat of formation + Delta-G solvation = -43.127974 kcal Electronic energy + Delta-G solvation = -20495.092659 eV Core-core repulsion = 17275.604148 eV Total energy + Delta-G solvation = -3219.488511 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.48352 -41.02931 -38.74223 -35.30426 -35.12771 -34.02357 -33.87333 -30.23793 -29.04340 -27.96222 -27.70567 -25.47920 -24.14807 -22.81386 -21.70758 -20.72621 -19.65411 -18.62745 -18.36855 -17.83778 -17.05607 -16.87634 -16.44844 -16.37632 -15.72846 -15.22517 -15.12144 -14.74015 -14.34624 -13.93846 -13.90596 -13.79324 -13.67609 -13.52159 -13.07929 -12.87332 -12.71889 -12.59602 -12.33510 -12.22453 -11.97601 -11.69636 -11.53418 -11.26150 -10.92372 -10.83632 -10.82474 -10.51004 -10.08424 -8.93786 -8.13583 -6.21384 -0.57607 1.17908 1.42845 1.43382 1.53769 1.72893 2.03667 2.33040 2.44732 2.46516 3.20765 3.74237 3.96847 4.00091 4.08337 4.08686 4.17030 4.22484 4.30741 4.69026 4.69106 4.72595 4.78163 4.91026 4.96591 5.03763 5.09526 5.12430 5.12463 5.23979 5.39816 5.47683 5.50168 5.53530 5.55450 5.58169 5.80413 5.90249 6.10194 6.30746 6.59911 6.93684 7.25059 7.46217 8.98991 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.048085 B = 0.002694 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.157554 B =10389.127318 C =10774.919620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.064 4.064 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.073 0.927 7 C -0.007 4.007 8 N -0.939 5.939 9 Si 0.960 3.040 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.259 1.259 13 C 0.141 3.859 14 N -0.705 5.705 15 C 0.542 3.458 16 O -0.598 6.598 17 C -0.218 4.218 18 C 0.022 3.978 19 C -0.044 4.044 20 C -0.159 4.159 21 C -0.232 4.232 22 C -0.010 4.010 23 O -0.180 6.180 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.057 0.943 29 H 0.069 0.931 30 H -0.014 1.014 31 H -0.014 1.014 32 H 0.259 0.741 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.414 0.586 36 H 0.150 0.850 37 H 0.156 0.844 38 H 0.171 0.829 39 H 0.178 0.822 40 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.739 9.510 25.957 28.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.065 4.065 3 C -0.179 4.179 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.091 0.909 7 C -0.204 4.204 8 N -0.580 5.580 9 Si 0.785 3.215 10 H -0.201 1.201 11 H -0.216 1.216 12 H -0.183 1.183 13 C 0.016 3.984 14 N -0.356 5.356 15 C 0.334 3.666 16 O -0.483 6.483 17 C -0.239 4.239 18 C 0.002 3.998 19 C -0.092 4.092 20 C -0.178 4.178 21 C -0.250 4.250 22 C -0.078 4.078 23 O -0.076 6.076 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.004 0.996 31 H 0.004 0.996 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.252 0.748 36 H 0.167 0.833 37 H 0.173 0.827 38 H 0.188 0.812 39 H 0.196 0.804 40 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -6.294 8.877 25.594 27.811 hybrid contribution 0.011 0.010 -1.197 1.197 sum -6.282 8.887 24.398 26.715 Atomic orbital electron populations 1.21700 0.93592 1.00987 1.01651 1.20704 0.96704 0.96302 0.92772 1.21701 0.99927 0.94643 1.01673 1.18984 0.94301 0.94236 0.92356 1.21587 1.30413 1.12039 0.91035 0.90908 1.25971 0.95714 0.95889 1.02781 1.70128 1.38820 1.24967 1.24080 0.85521 0.79173 0.78088 0.78710 1.20149 1.21583 1.18328 1.21222 0.97816 0.95408 0.83913 1.45920 1.52773 1.31955 1.04961 1.17462 0.80272 0.84098 0.84769 1.90807 1.40881 1.28710 1.87868 1.21978 1.06285 1.03815 0.91804 1.20711 0.93666 0.96432 0.88977 1.19874 1.02350 0.91424 0.95557 1.22788 1.01965 1.01967 0.91056 1.22188 1.03028 0.97347 1.02468 1.25237 1.01514 1.01899 0.79196 1.84103 1.54535 1.37744 1.31250 0.91222 0.92486 0.94423 0.94429 0.92443 0.91227 0.99566 0.99550 0.93185 0.93532 0.93533 0.74819 0.83259 0.82664 0.81174 0.80440 0.73939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.18 8.05 71.98 0.58 -3.60 16 2 C -0.06 -2.48 0.54 -52.18 -0.03 -2.51 16 3 C -0.12 -4.18 8.05 71.98 0.58 -3.60 16 4 C 0.04 2.00 4.04 29.85 0.12 2.12 16 5 C -0.51 -27.69 7.65 25.60 0.20 -27.49 16 6 H 0.07 3.67 5.68 -2.91 -0.02 3.65 16 7 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 8 N -0.94 -57.57 13.29 21.45 0.28 -57.28 16 9 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 13 C 0.14 5.20 4.56 86.38 0.39 5.60 16 14 N -0.70 -20.55 4.95 -472.18 -2.34 -22.88 16 15 C 0.54 16.65 7.56 85.06 0.64 17.29 16 16 O -0.60 -23.40 16.11 -4.58 -0.07 -23.47 16 17 C -0.22 -5.04 9.41 22.48 0.21 -4.83 16 18 C 0.02 0.47 9.39 22.50 0.21 0.69 16 19 C -0.04 -0.81 6.84 23.03 0.16 -0.65 16 20 C -0.16 -2.33 10.90 22.70 0.25 -2.09 16 21 C -0.23 -2.50 10.87 22.06 0.24 -2.26 16 22 C -0.01 -0.10 12.06 67.11 0.81 0.71 16 23 O -0.18 -3.09 10.18 -6.06 -0.06 -3.15 16 24 H 0.07 1.81 6.86 -2.39 -0.02 1.80 16 25 H 0.06 2.08 6.62 -2.39 -0.02 2.06 16 26 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 28 H 0.06 2.08 6.62 -2.39 -0.02 2.07 16 29 H 0.07 1.81 6.86 -2.39 -0.02 1.79 16 30 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 31 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 32 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.41 9.46 6.12 -92.71 -0.57 8.89 16 36 H 0.15 2.73 7.72 -2.91 -0.02 2.70 16 37 H 0.16 3.38 7.46 -2.91 -0.02 3.35 16 38 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 39 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 40 H 0.24 0.29 8.06 -2.91 -0.02 0.27 16 Total: -1.00 -72.71 336.02 5.13 -67.58 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.47 Total: 13.87 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 4.82 Total: -20.54 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -2.05 Total: -80.17 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.14 Total: -26.62 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -72.71 5.13 -67.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805279787.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.447 kcal (2) G-P(sol) polarization free energy of solvation -72.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds